Wall clock time and date at job start Fri Apr 10 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47486 * 2 1 4 4 H 1.09001 * 109.47272 * 177.95372 * 3 2 1 5 5 C 1.50705 * 109.47048 * 57.95161 * 3 2 1 6 6 H 1.07997 * 120.00101 * 244.93238 * 5 3 2 7 7 C 1.37879 * 119.99670 * 64.93432 * 5 3 2 8 8 N 1.31507 * 120.00289 * 9.96213 * 7 5 3 9 9 Si 1.86797 * 119.99589 * 189.96013 * 7 5 3 10 10 H 1.48506 * 109.47098 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47420 * 299.99867 * 9 7 5 12 12 H 1.48504 * 109.47307 * 60.00187 * 9 7 5 13 13 N 1.46902 * 109.46782 * 297.95512 * 3 2 1 14 14 C 1.46904 * 110.99721 * 277.38910 * 13 3 2 15 15 C 1.50703 * 109.46639 * 184.28937 * 14 13 3 16 16 O 1.21275 * 120.00239 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99724 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00040 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.47073 * 34.99973 * 18 17 15 20 20 C 1.52998 * 109.47314 * 274.99990 * 18 17 15 21 21 C 1.50699 * 109.47329 * 154.99734 * 18 17 15 22 22 O 1.21290 * 119.99539 * 17.74931 * 21 18 17 23 23 N 1.34768 * 120.00487 * 197.75361 * 21 18 17 24 24 C 1.46929 * 120.62800 * 4.18527 * 23 21 18 25 25 C 1.53624 * 108.54164 * 126.37215 * 24 23 21 26 26 C 1.53045 * 109.24359 * 54.85646 * 25 24 23 27 27 C 1.53040 * 109.53596 * 298.51489 * 26 25 24 28 28 C 1.46925 * 120.63506 * 184.47072 * 23 21 18 29 29 H 1.08999 * 109.47275 * 184.28996 * 1 2 3 30 30 H 1.09006 * 109.46675 * 304.28368 * 1 2 3 31 31 H 1.09000 * 109.46872 * 64.28271 * 1 2 3 32 32 H 1.09004 * 109.46947 * 239.99418 * 2 1 3 33 33 H 1.09003 * 109.46749 * 119.99934 * 2 1 3 34 34 H 0.97005 * 120.00081 * 356.75155 * 8 7 5 35 35 H 1.00898 * 110.99868 * 153.43940 * 13 3 2 36 36 H 1.08998 * 109.47154 * 304.28649 * 14 13 3 37 37 H 1.08997 * 109.47078 * 64.29426 * 14 13 3 38 38 H 0.97000 * 120.00004 * 359.97438 * 17 15 14 39 39 H 1.08995 * 109.47267 * 185.13895 * 20 18 17 40 40 H 1.08998 * 109.47066 * 305.13685 * 20 18 17 41 41 H 1.09003 * 109.47160 * 65.13644 * 20 18 17 42 42 H 1.08996 * 109.58822 * 246.20141 * 24 23 21 43 43 H 1.08992 * 109.58979 * 6.63508 * 24 23 21 44 44 H 1.09003 * 109.63743 * 294.87059 * 25 24 23 45 45 H 1.09002 * 109.43702 * 174.72199 * 25 24 23 46 46 H 1.08998 * 109.46428 * 178.48831 * 26 25 24 47 47 H 1.09005 * 109.45636 * 58.53221 * 26 25 24 48 48 H 1.08997 * 109.49832 * 301.40849 * 27 26 25 49 49 H 1.09010 * 109.49510 * 181.31474 * 27 26 25 50 50 H 1.08998 * 109.58566 * 353.37291 * 28 23 21 51 51 H 1.09001 * 109.58690 * 113.79559 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0367 5 6 1.4967 2.1674 1.2043 6 1 0.8157 2.9954 1.0744 7 6 1.8692 1.7735 2.4721 8 7 2.8412 0.9021 2.6309 9 14 0.9930 2.4777 3.9640 10 1 1.5770 1.8982 5.2003 11 1 1.1576 3.9534 3.9840 12 1 -0.4518 2.1417 3.8939 13 7 1.5912 2.1205 -1.2234 14 6 2.4816 1.8153 -2.3513 15 6 2.0526 2.6086 -3.5587 16 8 1.0995 3.3550 -3.4866 17 7 2.7283 2.4886 -4.7187 18 6 2.3110 3.2593 -5.8926 19 1 1.9386 4.2330 -5.5743 20 6 1.2026 2.5054 -6.6301 21 6 3.4886 3.4486 -6.8138 22 8 4.4660 2.7391 -6.7022 23 7 3.4557 4.4062 -7.7616 24 6 2.3188 5.3326 -7.8505 25 6 2.8577 6.7710 -7.8266 26 6 3.8942 6.9398 -8.9400 27 6 5.0643 5.9833 -8.6993 28 6 4.5530 4.5396 -8.7295 29 1 -0.3634 -1.0248 0.0769 30 1 -0.3633 0.5789 0.8492 31 1 -0.3633 0.4459 -0.9259 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2645 0.5010 1.8558 35 1 1.5189 3.1165 -1.0791 36 1 3.5056 2.0799 -2.0878 37 1 2.4283 0.7506 -2.5785 38 1 3.4909 1.8919 -4.7763 39 1 0.9557 3.0325 -7.5516 40 1 1.5445 1.4982 -6.8681 41 1 0.3179 2.4484 -5.9958 42 1 1.7769 5.1580 -8.7799 43 1 1.6529 5.1765 -7.0019 44 1 3.3242 6.9715 -6.8621 45 1 2.0358 7.4690 -7.9860 46 1 4.2594 7.9668 -8.9436 47 1 3.4335 6.7152 -9.9020 48 1 5.5099 6.1911 -7.7265 49 1 5.8129 6.1205 -9.4797 50 1 5.3617 3.8598 -8.4610 51 1 4.1895 4.3015 -9.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:53 Heat of formation + Delta-G solvation = -84.075930 kcal Electronic energy + Delta-G solvation = -28418.797794 eV Core-core repulsion = 24545.446011 eV Total energy + Delta-G solvation = -3873.351783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91461 -39.36629 -37.78434 -36.35184 -35.03935 -33.44688 -32.71315 -31.74349 -30.91037 -30.36835 -27.08010 -26.27093 -24.77148 -24.05364 -23.46272 -23.17046 -21.21913 -20.31471 -19.54229 -19.20825 -18.00109 -17.12673 -16.81461 -16.12057 -15.78147 -15.46112 -15.26156 -14.98900 -14.51329 -14.37522 -14.24143 -13.96479 -13.80970 -13.69298 -13.41569 -13.35755 -13.00117 -12.83966 -12.68166 -12.57491 -12.11202 -11.88756 -11.77462 -11.70971 -11.56692 -11.43815 -11.18595 -11.10578 -11.05490 -10.74888 -10.14193 -10.07231 -10.06643 -10.00837 -9.71575 -9.53275 -9.16472 -9.09045 -8.57794 -8.22452 -7.39067 -6.34889 -4.04072 2.18466 2.41683 2.86043 3.22619 3.45996 3.48832 3.66599 3.98677 4.24348 4.38082 4.42920 4.53692 4.58419 4.72363 4.79545 4.82900 4.98654 5.03436 5.07754 5.26109 5.27508 5.30959 5.34708 5.35796 5.39219 5.43953 5.55733 5.58991 5.61067 5.80676 5.82787 5.84291 5.89923 6.05469 6.31739 6.35369 6.44075 6.62836 6.91960 6.95218 7.05021 7.26576 7.43933 7.54936 7.59844 7.72316 7.87899 8.11504 8.37701 8.53468 8.60195 8.88627 9.65759 11.02748 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.002289 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.656541 B =12229.716827 C =12562.554960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.007 1.007 5 C -0.593 4.593 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.662 5.662 14 C 0.042 3.958 15 C 0.519 3.481 16 O -0.525 6.525 17 N -0.725 5.725 18 C 0.127 3.873 19 H 0.110 0.890 20 C -0.158 4.158 21 C 0.516 3.484 22 O -0.535 6.535 23 N -0.609 5.609 24 C 0.100 3.900 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.136 4.136 28 C 0.110 3.890 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.058 0.942 34 H 0.270 0.730 35 H 0.344 0.656 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.409 0.591 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 8.878 -26.409 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.632 4.632 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.546 5.546 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.090 4.090 15 C 0.306 3.694 16 O -0.400 6.400 17 N -0.381 5.381 18 C 0.018 3.982 19 H 0.127 0.873 20 C -0.217 4.217 21 C 0.304 3.696 22 O -0.412 6.412 23 N -0.343 5.343 24 C -0.023 4.023 25 C -0.176 4.176 26 C -0.158 4.158 27 C -0.174 4.174 28 C -0.012 4.012 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.163 0.837 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.862 8.535 -24.766 26.210 hybrid contribution 1.204 0.286 -1.660 2.071 sum 2.067 8.820 -26.427 27.936 Atomic orbital electron populations 1.21451 0.96344 0.97825 1.02232 1.21507 0.96523 0.98137 0.98328 1.19311 0.92793 0.91621 0.86660 0.98974 1.21905 1.31373 1.18390 0.91505 0.92640 1.25710 0.95418 0.96281 1.00683 1.70809 1.20736 1.28597 1.34435 0.83578 0.75751 0.75620 0.75576 1.20925 1.21568 1.21278 1.60422 1.48782 1.15730 1.04564 1.21845 0.96295 1.00007 0.90892 1.21047 0.82323 0.82259 0.83743 1.90666 1.27087 1.38124 1.84110 1.45908 1.35323 1.47175 1.09722 1.20701 0.92650 0.98339 0.86488 0.87253 1.22125 0.98379 1.00820 1.00356 1.20737 0.88467 0.79675 0.80747 1.90691 1.34227 1.45820 1.70430 1.48040 1.22082 1.32280 1.31909 1.22017 0.88073 0.88912 1.03269 1.22015 0.99560 0.95973 1.00023 1.21523 0.96013 0.99632 0.98613 1.21922 0.98118 0.94506 1.02840 1.21624 0.90257 0.97547 0.91759 0.96387 0.91893 0.93361 0.96235 0.92318 0.91886 0.83665 0.93204 0.88831 0.75464 0.91396 0.91588 0.90208 0.90754 0.89061 0.91179 0.90303 0.91499 0.91665 0.91375 0.90606 0.88844 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.53 37.16 0.35 -2.37 16 2 C -0.11 -2.51 5.48 -26.73 -0.15 -2.65 16 3 C 0.20 5.06 1.92 -68.86 -0.13 4.93 16 4 H -0.01 -0.19 7.13 -51.93 -0.37 -0.56 16 5 C -0.59 -16.30 7.06 -34.44 -0.24 -16.54 16 6 H 0.06 1.55 7.72 -52.49 -0.41 1.15 16 7 C 0.02 0.67 5.21 -17.82 -0.09 0.57 16 8 N -0.91 -26.87 13.09 55.43 0.73 -26.14 16 9 Si 1.07 25.16 29.91 -169.99 -5.09 20.07 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.66 -14.51 5.40 -109.21 -0.59 -15.10 16 14 C 0.04 0.76 6.00 -4.97 -0.03 0.73 16 15 C 0.52 8.61 7.82 -10.98 -0.09 8.53 16 16 O -0.53 -10.19 15.77 5.56 0.09 -10.11 16 17 N -0.72 -9.71 5.03 -54.93 -0.28 -9.99 16 18 C 0.13 1.44 2.13 -69.09 -0.15 1.30 16 19 H 0.11 1.26 5.92 -51.93 -0.31 0.95 16 20 C -0.16 -1.54 9.27 37.16 0.34 -1.19 16 21 C 0.52 5.85 6.96 -10.99 -0.08 5.78 16 22 O -0.54 -7.66 15.31 5.55 0.08 -7.58 16 23 N -0.61 -5.18 2.97 -172.51 -0.51 -5.69 16 24 C 0.10 0.61 5.55 -3.48 -0.02 0.59 16 25 C -0.14 -0.76 6.10 -26.38 -0.16 -0.92 16 26 C -0.12 -0.59 5.88 -26.69 -0.16 -0.75 16 27 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 28 C 0.11 0.81 6.44 -3.71 -0.02 0.79 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 1.54 7.00 -51.93 -0.36 1.17 16 31 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 32 H 0.02 0.41 7.33 -51.93 -0.38 0.03 16 33 H 0.06 1.50 6.41 -51.93 -0.33 1.17 16 34 H 0.27 7.93 5.98 -40.82 -0.24 7.68 16 35 H 0.34 7.90 7.84 -39.29 -0.31 7.59 16 36 H 0.05 0.87 7.96 -51.93 -0.41 0.46 16 37 H 0.09 1.58 7.36 -51.93 -0.38 1.19 16 38 H 0.41 5.20 7.73 -40.82 -0.32 4.88 16 39 H 0.07 0.49 7.25 -51.93 -0.38 0.12 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.58 5.31 -51.93 -0.28 0.30 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 50 H 0.09 0.85 7.00 -51.93 -0.36 0.48 16 51 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -32.78 395.52 -9.07 -41.85 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.69 Total: 8.90 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.78 Total: -2.18 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.65 Total: -56.92 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.69 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.09 Total: 20.07 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.78 -9.07 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.221 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds