Wall clock time and date at job start Fri Apr 10 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47486 * 2 1 4 4 H 1.09001 * 109.47272 * 177.95372 * 3 2 1 5 5 C 1.50705 * 109.47048 * 57.95161 * 3 2 1 6 6 H 1.07997 * 120.00101 * 244.93238 * 5 3 2 7 7 C 1.37879 * 119.99670 * 64.93432 * 5 3 2 8 8 N 1.31507 * 120.00289 * 9.96213 * 7 5 3 9 9 Si 1.86797 * 119.99589 * 189.96013 * 7 5 3 10 10 H 1.48506 * 109.47098 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47420 * 299.99867 * 9 7 5 12 12 H 1.48504 * 109.47307 * 60.00187 * 9 7 5 13 13 N 1.46902 * 109.46782 * 297.95512 * 3 2 1 14 14 C 1.46904 * 110.99721 * 277.38910 * 13 3 2 15 15 C 1.50703 * 109.46639 * 184.28937 * 14 13 3 16 16 O 1.21275 * 120.00239 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99724 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00040 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.47073 * 34.99973 * 18 17 15 20 20 C 1.52998 * 109.47314 * 274.99990 * 18 17 15 21 21 C 1.50699 * 109.47329 * 154.99734 * 18 17 15 22 22 O 1.21290 * 119.99539 * 17.74931 * 21 18 17 23 23 N 1.34768 * 120.00487 * 197.75361 * 21 18 17 24 24 C 1.46929 * 120.62800 * 4.18527 * 23 21 18 25 25 C 1.53624 * 108.54164 * 126.37215 * 24 23 21 26 26 C 1.53045 * 109.24359 * 54.85646 * 25 24 23 27 27 C 1.53040 * 109.53596 * 298.51489 * 26 25 24 28 28 C 1.46925 * 120.63506 * 184.47072 * 23 21 18 29 29 H 1.08999 * 109.47275 * 184.28996 * 1 2 3 30 30 H 1.09006 * 109.46675 * 304.28368 * 1 2 3 31 31 H 1.09000 * 109.46872 * 64.28271 * 1 2 3 32 32 H 1.09004 * 109.46947 * 239.99418 * 2 1 3 33 33 H 1.09003 * 109.46749 * 119.99934 * 2 1 3 34 34 H 0.97005 * 120.00081 * 356.75155 * 8 7 5 35 35 H 1.00898 * 110.99868 * 153.43940 * 13 3 2 36 36 H 1.08998 * 109.47154 * 304.28649 * 14 13 3 37 37 H 1.08997 * 109.47078 * 64.29426 * 14 13 3 38 38 H 0.97000 * 120.00004 * 359.97438 * 17 15 14 39 39 H 1.08995 * 109.47267 * 185.13895 * 20 18 17 40 40 H 1.08998 * 109.47066 * 305.13685 * 20 18 17 41 41 H 1.09003 * 109.47160 * 65.13644 * 20 18 17 42 42 H 1.08996 * 109.58822 * 246.20141 * 24 23 21 43 43 H 1.08992 * 109.58979 * 6.63508 * 24 23 21 44 44 H 1.09003 * 109.63743 * 294.87059 * 25 24 23 45 45 H 1.09002 * 109.43702 * 174.72199 * 25 24 23 46 46 H 1.08998 * 109.46428 * 178.48831 * 26 25 24 47 47 H 1.09005 * 109.45636 * 58.53221 * 26 25 24 48 48 H 1.08997 * 109.49832 * 301.40849 * 27 26 25 49 49 H 1.09010 * 109.49510 * 181.31474 * 27 26 25 50 50 H 1.08998 * 109.58566 * 353.37291 * 28 23 21 51 51 H 1.09001 * 109.58690 * 113.79559 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0367 5 6 1.4967 2.1674 1.2043 6 1 0.8157 2.9954 1.0744 7 6 1.8692 1.7735 2.4721 8 7 2.8412 0.9021 2.6309 9 14 0.9930 2.4777 3.9640 10 1 1.5770 1.8982 5.2003 11 1 1.1576 3.9534 3.9840 12 1 -0.4518 2.1417 3.8939 13 7 1.5912 2.1205 -1.2234 14 6 2.4816 1.8153 -2.3513 15 6 2.0526 2.6086 -3.5587 16 8 1.0995 3.3550 -3.4866 17 7 2.7283 2.4886 -4.7187 18 6 2.3110 3.2593 -5.8926 19 1 1.9386 4.2330 -5.5743 20 6 1.2026 2.5054 -6.6301 21 6 3.4886 3.4486 -6.8138 22 8 4.4660 2.7391 -6.7022 23 7 3.4557 4.4062 -7.7616 24 6 2.3188 5.3326 -7.8505 25 6 2.8577 6.7710 -7.8266 26 6 3.8942 6.9398 -8.9400 27 6 5.0643 5.9833 -8.6993 28 6 4.5530 4.5396 -8.7295 29 1 -0.3634 -1.0248 0.0769 30 1 -0.3633 0.5789 0.8492 31 1 -0.3633 0.4459 -0.9259 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2645 0.5010 1.8558 35 1 1.5189 3.1165 -1.0791 36 1 3.5056 2.0799 -2.0878 37 1 2.4283 0.7506 -2.5785 38 1 3.4909 1.8919 -4.7763 39 1 0.9557 3.0325 -7.5516 40 1 1.5445 1.4982 -6.8681 41 1 0.3179 2.4484 -5.9958 42 1 1.7769 5.1580 -8.7799 43 1 1.6529 5.1765 -7.0019 44 1 3.3242 6.9715 -6.8621 45 1 2.0358 7.4690 -7.9860 46 1 4.2594 7.9668 -8.9436 47 1 3.4335 6.7152 -9.9020 48 1 5.5099 6.1911 -7.7265 49 1 5.8129 6.1205 -9.4797 50 1 5.3617 3.8598 -8.4610 51 1 4.1895 4.3015 -9.7291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:52 Heat of formation + Delta-G solvation = -106.662831 kcal Electronic energy + Delta-G solvation = -28419.777236 eV Core-core repulsion = 24545.446011 eV Total energy + Delta-G solvation = -3874.331225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80641 -40.57491 -38.56695 -38.14923 -36.17677 -34.62568 -34.12258 -32.75843 -32.30899 -31.42998 -28.77209 -26.99413 -26.36295 -25.37747 -24.84100 -23.98292 -22.04183 -21.44487 -21.17593 -20.21410 -19.35714 -18.49694 -17.92936 -17.30210 -16.96281 -16.51836 -16.40907 -15.82390 -15.76332 -15.59583 -15.42006 -15.21762 -15.02296 -14.88463 -14.61818 -14.37159 -14.19753 -13.84462 -13.74859 -13.49869 -13.41880 -13.37589 -13.21864 -13.06578 -12.74988 -12.60257 -12.25571 -12.00702 -11.95127 -11.91698 -11.86920 -11.69269 -11.61118 -11.53639 -11.01754 -10.90428 -10.64701 -10.34445 -10.30024 -9.77278 -9.19130 -8.57737 -6.27092 1.28839 1.51294 1.55130 1.61507 1.62352 1.81418 2.16398 2.58425 3.20382 3.22261 3.52548 3.67886 3.81146 3.89048 3.92121 3.98356 4.01052 4.07958 4.29222 4.31644 4.34553 4.44699 4.47415 4.53641 4.55889 4.58337 4.68053 4.74865 4.78980 4.86544 4.88333 4.99908 5.01723 5.08703 5.11924 5.19271 5.19927 5.24704 5.37483 5.40899 5.46968 5.50311 5.71627 5.86854 6.07639 6.17070 6.31376 6.49648 6.56997 6.76442 6.88905 7.10900 7.50075 8.80571 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.002289 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.656541 B =12229.716827 C =12562.554960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.208 3.792 4 H -0.033 1.033 5 C -0.600 4.600 6 H 0.046 0.954 7 C -0.021 4.021 8 N -0.933 5.933 9 Si 1.108 2.892 10 H -0.285 1.285 11 H -0.275 1.275 12 H -0.272 1.272 13 N -0.663 5.663 14 C 0.041 3.959 15 C 0.527 3.473 16 O -0.556 6.556 17 N -0.713 5.713 18 C 0.125 3.875 19 H 0.109 0.891 20 C -0.150 4.150 21 C 0.514 3.486 22 O -0.573 6.573 23 N -0.602 5.602 24 C 0.094 3.906 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.132 4.132 28 C 0.107 3.893 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.260 0.740 35 H 0.336 0.664 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.413 0.587 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 9.690 -28.587 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C 0.099 3.901 4 H -0.015 1.015 5 C -0.638 4.638 6 H 0.064 0.936 7 C -0.220 4.220 8 N -0.570 5.570 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.198 1.198 13 N -0.294 5.294 14 C -0.091 4.091 15 C 0.314 3.686 16 O -0.433 6.433 17 N -0.368 5.368 18 C 0.017 3.983 19 H 0.127 0.873 20 C -0.209 4.209 21 C 0.302 3.698 22 O -0.452 6.452 23 N -0.334 5.334 24 C -0.028 4.028 25 C -0.175 4.175 26 C -0.154 4.154 27 C -0.170 4.170 28 C -0.015 4.015 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.200 9.371 -27.019 28.599 hybrid contribution 1.586 0.081 -1.121 1.944 sum 1.386 9.452 -28.141 29.718 Atomic orbital electron populations 1.21334 0.95254 0.98993 1.01277 1.21409 0.97365 0.97050 0.98214 1.19161 0.91114 0.92534 0.87267 1.01533 1.22159 1.30743 1.18146 0.92761 0.93580 1.26969 0.95329 0.96080 1.03649 1.70916 1.22095 1.30014 1.33990 0.83033 0.75454 0.75830 0.72577 1.21104 1.20027 1.19774 1.60343 1.49797 1.14890 1.04411 1.21886 0.95810 1.01153 0.90279 1.20655 0.82094 0.81731 0.84104 1.90656 1.28523 1.39478 1.84620 1.45774 1.34687 1.46794 1.09554 1.20879 0.93355 0.98250 0.85830 0.87294 1.22067 0.96852 1.00919 1.01029 1.20684 0.87838 0.80071 0.81207 1.90676 1.35368 1.47544 1.71658 1.48151 1.22922 1.31404 1.30945 1.22272 0.87347 0.88668 1.04512 1.22023 1.00263 0.95874 0.99345 1.21526 0.95307 0.99592 0.99025 1.21902 0.98986 0.93836 1.02307 1.21761 0.89474 0.98000 0.92270 0.93918 0.94268 0.92977 0.94009 0.94664 0.92988 0.84605 0.92688 0.87448 0.74943 0.88510 0.91693 0.91565 0.88094 0.89314 0.93154 0.88498 0.90897 0.90020 0.93455 0.88991 0.91002 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.90 9.53 71.98 0.69 -4.21 16 2 C -0.10 -4.78 5.48 30.59 0.17 -4.61 16 3 C 0.21 10.46 1.92 44.17 0.08 10.54 16 4 H -0.03 -1.79 7.13 -2.39 -0.02 -1.80 16 5 C -0.60 -33.39 7.06 25.60 0.18 -33.21 16 6 H 0.05 2.61 7.72 -2.91 -0.02 2.58 16 7 C -0.02 -1.18 5.21 84.66 0.44 -0.74 16 8 N -0.93 -56.01 13.09 21.45 0.28 -55.73 16 9 Si 1.11 50.62 29.91 68.60 2.05 52.67 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.66 -29.19 5.40 -499.44 -2.70 -31.89 16 14 C 0.04 1.46 6.00 85.56 0.51 1.98 16 15 C 0.53 17.33 7.82 87.66 0.69 18.02 16 16 O -0.56 -21.47 15.77 -3.01 -0.05 -21.52 16 17 N -0.71 -18.79 5.03 -446.10 -2.25 -21.03 16 18 C 0.12 2.73 2.13 44.25 0.09 2.82 16 19 H 0.11 2.43 5.92 -2.38 -0.01 2.42 16 20 C -0.15 -2.67 9.27 71.98 0.67 -2.01 16 21 C 0.51 11.30 6.96 87.66 0.61 11.91 16 22 O -0.57 -16.44 15.31 -3.06 -0.05 -16.48 16 23 N -0.60 -9.34 2.97 -818.09 -2.43 -11.77 16 24 C 0.09 0.92 5.55 86.51 0.48 1.40 16 25 C -0.14 -1.22 6.10 30.82 0.19 -1.04 16 26 C -0.12 -0.86 5.88 30.62 0.18 -0.68 16 27 C -0.13 -1.37 6.08 30.67 0.19 -1.18 16 28 C 0.11 1.41 6.44 86.36 0.56 1.97 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.88 7.00 -2.38 -0.02 1.87 16 31 H 0.05 2.23 7.79 -2.39 -0.02 2.21 16 32 H 0.04 1.74 7.33 -2.38 -0.02 1.73 16 33 H 0.03 1.81 6.41 -2.39 -0.02 1.80 16 34 H 0.26 15.69 5.98 -92.70 -0.55 15.14 16 35 H 0.34 15.66 7.84 -89.70 -0.70 14.96 16 36 H 0.06 1.92 7.96 -2.39 -0.02 1.91 16 37 H 0.11 3.51 7.36 -2.39 -0.02 3.49 16 38 H 0.41 10.36 7.73 -92.71 -0.72 9.64 16 39 H 0.10 1.14 7.25 -2.39 -0.02 1.12 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.09 0.95 5.31 -2.39 -0.01 0.93 16 44 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 48 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.09 0.66 8.14 -2.38 -0.02 0.65 16 50 H 0.07 1.29 7.00 -2.39 -0.02 1.27 16 51 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.59 395.52 0.32 -71.27 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.27 Total: 33.52 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.72 Total: 0.96 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -7.09 Total: -120.43 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.09 Total: -38.00 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -71.59 0.32 -71.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.391 kcal (2) G-P(sol) polarization free energy of solvation -71.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds