Wall clock time and date at job start Fri Apr 10 2020 18:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.08997 * 109.46856 * 179.07699 * 3 2 1 5 5 C 1.50702 * 109.46458 * 299.07391 * 3 2 1 6 6 H 1.08003 * 119.99934 * 120.00461 * 5 3 2 7 7 C 1.37877 * 120.00125 * 299.99983 * 5 3 2 8 8 N 1.31513 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99814 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47310 * 89.99924 * 9 7 5 11 11 H 1.48501 * 109.46968 * 209.99876 * 9 7 5 12 12 H 1.48505 * 109.47079 * 329.99702 * 9 7 5 13 13 N 1.46894 * 109.47223 * 59.07089 * 3 2 1 14 14 C 1.46902 * 110.99932 * 86.31587 * 13 3 2 15 15 C 1.50695 * 109.47654 * 185.35141 * 14 13 3 16 16 O 1.21291 * 119.99697 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00524 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00163 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.47587 * 34.99708 * 18 17 15 20 20 C 1.53002 * 109.47107 * 274.99773 * 18 17 15 21 21 C 1.50698 * 109.47235 * 154.99709 * 18 17 15 22 22 O 1.21283 * 119.99891 * 18.02518 * 21 18 17 23 23 N 1.34784 * 120.00463 * 198.02735 * 21 18 17 24 24 C 1.46926 * 120.62478 * 4.67852 * 23 21 18 25 25 C 1.53629 * 108.53799 * 126.37055 * 24 23 21 26 26 C 1.53035 * 109.24223 * 54.85882 * 25 24 23 27 27 C 1.53041 * 109.53814 * 298.51011 * 26 25 24 28 28 C 1.46916 * 120.63240 * 184.96401 * 23 21 18 29 29 H 1.08994 * 109.46722 * 176.37755 * 1 2 3 30 30 H 1.09001 * 109.47073 * 296.37571 * 1 2 3 31 31 H 1.08990 * 109.46931 * 56.37477 * 1 2 3 32 32 H 1.08994 * 109.47509 * 239.99462 * 2 1 3 33 33 H 1.09007 * 109.46881 * 119.99415 * 2 1 3 34 34 H 0.97003 * 119.99794 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00457 * 210.26574 * 13 3 2 36 36 H 1.09004 * 109.47101 * 305.35064 * 14 13 3 37 37 H 1.09000 * 109.47292 * 65.34665 * 14 13 3 38 38 H 0.96997 * 119.99538 * 359.97438 * 17 15 14 39 39 H 1.08998 * 109.46730 * 305.06994 * 20 18 17 40 40 H 1.08995 * 109.47307 * 65.07765 * 20 18 17 41 41 H 1.09004 * 109.46886 * 185.07698 * 20 18 17 42 42 H 1.08995 * 109.59080 * 246.20035 * 24 23 21 43 43 H 1.09002 * 109.59096 * 6.63659 * 24 23 21 44 44 H 1.08995 * 109.63641 * 294.86505 * 25 24 23 45 45 H 1.09007 * 109.42836 * 174.72392 * 25 24 23 46 46 H 1.09002 * 109.46544 * 178.48917 * 26 25 24 47 47 H 1.09001 * 109.45910 * 58.52776 * 26 25 24 48 48 H 1.09006 * 109.49687 * 301.41184 * 27 26 25 49 49 H 1.08998 * 109.49955 * 181.31921 * 27 26 25 50 50 H 1.08998 * 109.58826 * 353.37299 * 28 23 21 51 51 H 1.09000 * 109.58950 * 113.79690 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4425 0.0166 5 6 1.5565 2.1462 -1.2419 6 1 0.9342 3.0248 -1.1570 7 6 1.9086 1.6683 -2.4863 8 7 2.6660 0.5982 -2.5897 9 14 1.3097 2.5409 -4.0256 10 1 2.2943 3.5802 -4.4203 11 1 1.1613 1.5559 -5.1269 12 1 -0.0027 3.1804 -3.7532 13 7 1.5322 2.1415 1.1880 14 6 2.4151 1.9273 2.3424 15 6 1.7971 2.5466 3.5693 16 8 0.7266 3.1113 3.4899 17 7 2.4343 2.4739 4.7548 18 6 1.8337 3.0765 5.9473 19 1 0.7497 2.9709 5.9012 20 6 2.1994 4.5609 6.0080 21 6 2.3542 2.3802 7.1783 22 8 3.3654 1.7135 7.1160 23 7 1.6960 2.4983 8.3486 24 6 0.4162 3.2167 8.4183 25 6 -0.6270 2.2943 9.0673 26 6 -0.1019 1.8135 10.4219 27 6 1.1866 1.0136 10.2168 28 6 2.2475 1.9165 9.5797 29 1 -0.3632 -1.0256 -0.0649 30 1 -0.3633 0.4565 0.9207 31 1 -0.3633 0.5690 -0.8556 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.9140 0.2622 -3.4652 35 1 1.4103 3.1260 1.0038 36 1 2.5493 0.8577 2.5037 37 1 3.3832 2.3900 2.1502 38 1 3.2905 2.0227 4.8182 39 1 3.2830 4.6702 5.9633 40 1 1.7465 5.0814 5.1642 41 1 1.8292 4.9885 6.9398 42 1 0.5354 4.1180 9.0195 43 1 0.0928 3.4857 7.4127 44 1 -0.8083 1.4351 8.4216 45 1 -1.5571 2.8441 9.2119 46 1 -0.8506 1.1802 10.8977 47 1 0.1027 2.6744 11.0584 48 1 0.9881 0.1663 9.5603 49 1 1.5473 0.6516 11.1795 50 1 3.1330 1.3275 9.3407 51 1 2.5131 2.7140 10.2737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:56 Heat of formation + Delta-G solvation = -79.616701 kcal Electronic energy + Delta-G solvation = -28414.247253 eV Core-core repulsion = 24541.088836 eV Total energy + Delta-G solvation = -3873.158417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86009 -39.25540 -37.73248 -36.07783 -34.93796 -33.39821 -32.56462 -31.70163 -30.87784 -30.26365 -27.17075 -26.24102 -25.02731 -24.11272 -23.32405 -22.97583 -21.17718 -20.22258 -19.46402 -18.93862 -17.86608 -16.99144 -16.50330 -15.99239 -15.73614 -15.35547 -15.24216 -14.92646 -14.67708 -14.39089 -14.31720 -13.85935 -13.81778 -13.63184 -13.35077 -13.07944 -12.92066 -12.73606 -12.60088 -12.54433 -12.06805 -11.84598 -11.77694 -11.69570 -11.41392 -11.33627 -11.14869 -11.02231 -10.90701 -10.76871 -10.36668 -10.06466 -10.01638 -9.87027 -9.42390 -9.31278 -9.08318 -9.04087 -8.76669 -8.44604 -7.22301 -6.00309 -4.05440 2.23195 2.46533 2.97511 3.30016 3.31647 3.38570 3.43366 4.03368 4.27935 4.41435 4.42938 4.46386 4.61838 4.77269 4.83175 4.87629 5.02529 5.07348 5.16186 5.29346 5.30039 5.34305 5.39085 5.40169 5.45178 5.47391 5.59740 5.62692 5.64233 5.87569 5.89004 5.93367 5.95509 6.09714 6.43465 6.57108 6.72679 6.89855 6.96466 7.26588 7.29090 7.50998 7.62980 7.76888 7.78165 7.82651 7.86484 8.28630 8.39271 8.49560 8.68099 9.03621 9.59250 11.05681 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.002238 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.228963 B =12507.772351 C =12594.134387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.002 0.998 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.045 3.955 15 C 0.519 3.481 16 O -0.524 6.524 17 N -0.726 5.726 18 C 0.127 3.873 19 H 0.110 0.890 20 C -0.158 4.158 21 C 0.517 3.483 22 O -0.535 6.535 23 N -0.609 5.609 24 C 0.100 3.900 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.136 4.136 28 C 0.110 3.890 29 H 0.013 0.987 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.009 0.991 34 H 0.260 0.740 35 H 0.339 0.661 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.408 0.592 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 4.488 27.106 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.300 5.300 14 C -0.088 4.088 15 C 0.306 3.694 16 O -0.398 6.398 17 N -0.383 5.383 18 C 0.018 3.982 19 H 0.128 0.872 20 C -0.216 4.216 21 C 0.304 3.696 22 O -0.411 6.411 23 N -0.344 5.344 24 C -0.022 4.022 25 C -0.176 4.176 26 C -0.158 4.158 27 C -0.174 4.174 28 C -0.012 4.012 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.245 0.755 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.716 3.904 27.011 27.426 hybrid contribution 0.839 0.686 -0.917 1.420 sum -1.877 4.590 26.094 26.561 Atomic orbital electron populations 1.21450 0.97418 0.97340 1.01585 1.21456 0.95163 0.98124 0.99453 1.19181 0.92861 0.91520 0.85538 0.98045 1.21177 1.31606 1.12014 0.90185 0.92138 1.24881 0.95050 0.94998 0.98943 1.69883 1.36477 1.22560 1.23891 0.86552 0.79243 0.79265 0.82695 1.20836 1.21264 1.19802 1.60416 1.47771 1.17088 1.04757 1.21769 0.95238 1.01299 0.90507 1.21149 0.85039 0.79108 0.84139 1.90661 1.21274 1.42596 1.85295 1.45938 1.25532 1.59796 1.07041 1.20691 1.00197 0.93493 0.83807 0.87243 1.22121 1.02874 0.93392 1.03260 1.20755 0.83863 0.80457 0.84520 1.90687 1.25340 1.40423 1.84687 1.48042 1.22578 1.55640 1.08105 1.22013 0.82777 0.94741 1.02717 1.22013 0.98178 1.00219 0.97160 1.21521 0.97205 1.00079 0.96969 1.21922 0.95602 0.98667 1.01193 1.21617 0.97422 0.97121 0.85019 0.96817 0.93746 0.92521 0.89364 0.97274 0.92957 0.84241 0.88780 0.93244 0.75528 0.91634 0.90300 0.91449 0.90814 0.89034 0.91139 0.90334 0.91525 0.91699 0.91351 0.90648 0.88849 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.52 37.16 0.35 -2.45 16 2 C -0.10 -2.54 5.59 -26.73 -0.15 -2.68 16 3 C 0.22 5.39 2.30 -68.86 -0.16 5.23 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.51 -13.82 7.31 -34.44 -0.25 -14.07 16 6 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -14.58 5.10 -109.22 -0.56 -15.14 16 14 C 0.05 0.81 5.93 -4.98 -0.03 0.78 16 15 C 0.52 8.66 7.85 -10.99 -0.09 8.58 16 16 O -0.52 -10.25 15.98 5.55 0.09 -10.17 16 17 N -0.73 -9.83 5.03 -54.94 -0.28 -10.11 16 18 C 0.13 1.46 2.13 -69.09 -0.15 1.31 16 19 H 0.11 1.29 5.88 -51.93 -0.31 0.98 16 20 C -0.16 -1.53 9.29 37.16 0.35 -1.19 16 21 C 0.52 5.92 6.95 -10.98 -0.08 5.85 16 22 O -0.54 -7.72 15.32 5.55 0.09 -7.64 16 23 N -0.61 -5.26 2.97 -172.51 -0.51 -5.77 16 24 C 0.10 0.63 5.59 -3.48 -0.02 0.61 16 25 C -0.14 -0.78 6.10 -26.39 -0.16 -0.94 16 26 C -0.12 -0.61 5.88 -26.69 -0.16 -0.77 16 27 C -0.14 -0.82 6.08 -26.61 -0.16 -0.98 16 28 C 0.11 0.82 6.44 -3.72 -0.02 0.80 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.04 1.01 7.70 -51.93 -0.40 0.61 16 31 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 32 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 33 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.34 7.55 8.09 -39.29 -0.32 7.23 16 36 H 0.09 1.65 7.44 -51.93 -0.39 1.27 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.41 5.24 7.73 -40.82 -0.32 4.93 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.49 7.32 -51.93 -0.38 0.11 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.60 5.35 -51.93 -0.28 0.32 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 51 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.43 15.07 5.99 5.99 Total: -1.00 -31.79 397.43 -9.23 -41.02 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.83 Total: 8.31 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.82 Total: 1.70 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.72 Total: -55.49 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.79 -9.23 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.597 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds