Wall clock time and date at job start Fri Apr 10 2020 18:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.08997 * 109.46856 * 179.07699 * 3 2 1 5 5 C 1.50702 * 109.46458 * 299.07391 * 3 2 1 6 6 H 1.08003 * 119.99934 * 120.00461 * 5 3 2 7 7 C 1.37877 * 120.00125 * 299.99983 * 5 3 2 8 8 N 1.31513 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99814 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47310 * 89.99924 * 9 7 5 11 11 H 1.48501 * 109.46968 * 209.99876 * 9 7 5 12 12 H 1.48505 * 109.47079 * 329.99702 * 9 7 5 13 13 N 1.46894 * 109.47223 * 59.07089 * 3 2 1 14 14 C 1.46902 * 110.99932 * 86.31587 * 13 3 2 15 15 C 1.50695 * 109.47654 * 185.35141 * 14 13 3 16 16 O 1.21291 * 119.99697 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00524 * 180.02562 * 15 14 13 18 18 C 1.46491 * 120.00163 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.47587 * 34.99708 * 18 17 15 20 20 C 1.53002 * 109.47107 * 274.99773 * 18 17 15 21 21 C 1.50698 * 109.47235 * 154.99709 * 18 17 15 22 22 O 1.21283 * 119.99891 * 18.02518 * 21 18 17 23 23 N 1.34784 * 120.00463 * 198.02735 * 21 18 17 24 24 C 1.46926 * 120.62478 * 4.67852 * 23 21 18 25 25 C 1.53629 * 108.53799 * 126.37055 * 24 23 21 26 26 C 1.53035 * 109.24223 * 54.85882 * 25 24 23 27 27 C 1.53041 * 109.53814 * 298.51011 * 26 25 24 28 28 C 1.46916 * 120.63240 * 184.96401 * 23 21 18 29 29 H 1.08994 * 109.46722 * 176.37755 * 1 2 3 30 30 H 1.09001 * 109.47073 * 296.37571 * 1 2 3 31 31 H 1.08990 * 109.46931 * 56.37477 * 1 2 3 32 32 H 1.08994 * 109.47509 * 239.99462 * 2 1 3 33 33 H 1.09007 * 109.46881 * 119.99415 * 2 1 3 34 34 H 0.97003 * 119.99794 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00457 * 210.26574 * 13 3 2 36 36 H 1.09004 * 109.47101 * 305.35064 * 14 13 3 37 37 H 1.09000 * 109.47292 * 65.34665 * 14 13 3 38 38 H 0.96997 * 119.99538 * 359.97438 * 17 15 14 39 39 H 1.08998 * 109.46730 * 305.06994 * 20 18 17 40 40 H 1.08995 * 109.47307 * 65.07765 * 20 18 17 41 41 H 1.09004 * 109.46886 * 185.07698 * 20 18 17 42 42 H 1.08995 * 109.59080 * 246.20035 * 24 23 21 43 43 H 1.09002 * 109.59096 * 6.63659 * 24 23 21 44 44 H 1.08995 * 109.63641 * 294.86505 * 25 24 23 45 45 H 1.09007 * 109.42836 * 174.72392 * 25 24 23 46 46 H 1.09002 * 109.46544 * 178.48917 * 26 25 24 47 47 H 1.09001 * 109.45910 * 58.52776 * 26 25 24 48 48 H 1.09006 * 109.49687 * 301.41184 * 27 26 25 49 49 H 1.08998 * 109.49955 * 181.31921 * 27 26 25 50 50 H 1.08998 * 109.58826 * 353.37299 * 28 23 21 51 51 H 1.09000 * 109.58950 * 113.79690 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4425 0.0166 5 6 1.5565 2.1462 -1.2419 6 1 0.9342 3.0248 -1.1570 7 6 1.9086 1.6683 -2.4863 8 7 2.6660 0.5982 -2.5897 9 14 1.3097 2.5409 -4.0256 10 1 2.2943 3.5802 -4.4203 11 1 1.1613 1.5559 -5.1269 12 1 -0.0027 3.1804 -3.7532 13 7 1.5322 2.1415 1.1880 14 6 2.4151 1.9273 2.3424 15 6 1.7971 2.5466 3.5693 16 8 0.7266 3.1113 3.4899 17 7 2.4343 2.4739 4.7548 18 6 1.8337 3.0765 5.9473 19 1 0.7497 2.9709 5.9012 20 6 2.1994 4.5609 6.0080 21 6 2.3542 2.3802 7.1783 22 8 3.3654 1.7135 7.1160 23 7 1.6960 2.4983 8.3486 24 6 0.4162 3.2167 8.4183 25 6 -0.6270 2.2943 9.0673 26 6 -0.1019 1.8135 10.4219 27 6 1.1866 1.0136 10.2168 28 6 2.2475 1.9165 9.5797 29 1 -0.3632 -1.0256 -0.0649 30 1 -0.3633 0.4565 0.9207 31 1 -0.3633 0.5690 -0.8556 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.9140 0.2622 -3.4652 35 1 1.4103 3.1260 1.0038 36 1 2.5493 0.8577 2.5037 37 1 3.3832 2.3900 2.1502 38 1 3.2905 2.0227 4.8182 39 1 3.2830 4.6702 5.9633 40 1 1.7465 5.0814 5.1642 41 1 1.8292 4.9885 6.9398 42 1 0.5354 4.1180 9.0195 43 1 0.0928 3.4857 7.4127 44 1 -0.8083 1.4351 8.4216 45 1 -1.5571 2.8441 9.2119 46 1 -0.8506 1.1802 10.8977 47 1 0.1027 2.6744 11.0584 48 1 0.9881 0.1663 9.5603 49 1 1.5473 0.6516 11.1795 50 1 3.1330 1.3275 9.3407 51 1 2.5131 2.7140 10.2737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:55 Heat of formation + Delta-G solvation = -101.066233 kcal Electronic energy + Delta-G solvation = -28415.177374 eV Core-core repulsion = 24541.088836 eV Total energy + Delta-G solvation = -3874.088538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75054 -40.46903 -38.50576 -37.87198 -36.09027 -34.48022 -34.08122 -32.71554 -32.25076 -31.37577 -28.94308 -27.00552 -26.57961 -25.12602 -24.77737 -23.94969 -21.97027 -21.36352 -20.90933 -20.16063 -19.05197 -18.23926 -17.79319 -17.30962 -16.90149 -16.70814 -16.37216 -16.19586 -15.52015 -15.41102 -15.31573 -15.06464 -14.91415 -14.79732 -14.55045 -14.34180 -14.13997 -13.91308 -13.77026 -13.48135 -13.35933 -13.23096 -13.02700 -12.80994 -12.71414 -12.64791 -12.41117 -12.22759 -11.96556 -11.88978 -11.73989 -11.66480 -11.51026 -11.34445 -10.92474 -10.86564 -10.76740 -10.51091 -10.23339 -9.73995 -9.01191 -8.09020 -6.20603 1.33069 1.42700 1.44769 1.54666 1.59600 1.69089 2.22257 2.45007 3.19779 3.24586 3.69025 3.75457 3.87802 3.92233 3.95465 4.03481 4.04898 4.10897 4.34239 4.41232 4.47039 4.48666 4.56650 4.60888 4.66041 4.71125 4.79176 4.81816 4.88991 4.91158 4.95247 5.02617 5.11140 5.14614 5.22674 5.29455 5.31325 5.37549 5.43445 5.50459 5.54991 5.72063 5.81263 5.87223 6.20541 6.28443 6.39249 6.48605 6.76985 6.92740 6.99571 7.21609 7.47718 8.96056 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025328 B = 0.002238 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.228963 B =12507.772351 C =12594.134387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.223 3.777 4 H -0.024 1.024 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.670 5.670 14 C 0.044 3.956 15 C 0.527 3.473 16 O -0.555 6.555 17 N -0.715 5.715 18 C 0.125 3.875 19 H 0.109 0.891 20 C -0.150 4.150 21 C 0.515 3.485 22 O -0.572 6.572 23 N -0.602 5.602 24 C 0.094 3.906 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.132 4.132 28 C 0.107 3.893 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.335 0.665 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 5.545 29.003 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.115 3.885 4 H -0.007 1.007 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.302 5.302 14 C -0.089 4.089 15 C 0.314 3.686 16 O -0.432 6.432 17 N -0.370 5.370 18 C 0.017 3.983 19 H 0.127 0.873 20 C -0.209 4.209 21 C 0.302 3.698 22 O -0.452 6.452 23 N -0.335 5.335 24 C -0.028 4.028 25 C -0.175 4.175 26 C -0.154 4.154 27 C -0.170 4.170 28 C -0.015 4.015 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.110 0.890 50 H 0.090 0.910 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.589 4.970 28.973 29.614 hybrid contribution 1.121 0.345 -1.379 1.811 sum -2.468 5.315 27.593 28.209 Atomic orbital electron populations 1.21305 0.96321 0.98281 1.00642 1.21352 0.96029 0.97682 0.98832 1.18975 0.91201 0.92032 0.86319 1.00651 1.21411 1.31513 1.12012 0.91358 0.92752 1.25589 0.95190 0.95634 1.01651 1.70000 1.37277 1.23593 1.24483 0.85608 0.78775 0.78278 0.79273 1.20229 1.20964 1.19578 1.60305 1.48696 1.16545 1.04651 1.21798 0.95301 1.01942 0.89879 1.20750 0.84547 0.78753 0.84545 1.90650 1.22523 1.44187 1.85794 1.45798 1.25319 1.59003 1.06909 1.20865 0.99949 0.94548 0.82948 0.87331 1.22065 1.02748 0.91807 1.04239 1.20700 0.83622 0.80237 0.85210 1.90673 1.27041 1.42186 1.85299 1.48150 1.22895 1.54856 1.07583 1.22265 0.81653 0.95580 1.03277 1.22020 0.98793 0.99589 0.97099 1.21523 0.96545 1.00582 0.96790 1.21902 0.95915 0.97862 1.01342 1.21755 0.97108 0.97851 0.84785 0.94763 0.93557 0.94562 0.91902 0.95877 0.92929 0.84684 0.88345 0.91899 0.75021 0.91774 0.91540 0.88594 0.88168 0.89326 0.93111 0.88537 0.90897 0.90071 0.93405 0.89015 0.90991 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.52 71.98 0.69 -4.30 16 2 C -0.10 -4.94 5.59 30.60 0.17 -4.77 16 3 C 0.22 11.26 2.30 44.17 0.10 11.36 16 4 H -0.02 -1.32 7.84 -2.39 -0.02 -1.34 16 5 C -0.52 -28.67 7.31 25.60 0.19 -28.48 16 6 H 0.05 2.98 7.60 -2.91 -0.02 2.96 16 7 C 0.02 1.03 5.30 84.65 0.45 1.48 16 8 N -0.91 -52.16 11.31 21.45 0.24 -51.92 16 9 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 N -0.67 -29.47 5.10 -499.47 -2.55 -32.02 16 14 C 0.04 1.56 5.93 85.55 0.51 2.07 16 15 C 0.53 17.48 7.85 87.66 0.69 18.17 16 16 O -0.55 -21.61 15.98 -3.06 -0.05 -21.66 16 17 N -0.71 -19.08 5.03 -446.10 -2.25 -21.32 16 18 C 0.13 2.77 2.13 44.25 0.09 2.86 16 19 H 0.11 2.47 5.88 -2.38 -0.01 2.46 16 20 C -0.15 -2.70 9.29 71.98 0.67 -2.03 16 21 C 0.51 11.45 6.95 87.66 0.61 12.06 16 22 O -0.57 -16.56 15.32 -3.04 -0.05 -16.60 16 23 N -0.60 -9.50 2.97 -818.07 -2.43 -11.93 16 24 C 0.09 0.95 5.59 86.51 0.48 1.43 16 25 C -0.14 -1.26 6.10 30.82 0.19 -1.07 16 26 C -0.12 -0.87 5.88 30.62 0.18 -0.69 16 27 C -0.13 -1.39 6.08 30.67 0.19 -1.20 16 28 C 0.11 1.43 6.44 86.36 0.56 1.99 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 2.08 7.70 -2.39 -0.02 2.06 16 31 H 0.04 1.78 7.12 -2.39 -0.02 1.77 16 32 H 0.06 3.44 6.04 -2.39 -0.01 3.43 16 33 H 0.02 1.04 7.49 -2.38 -0.02 1.02 16 34 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.34 15.11 8.09 -89.70 -0.73 14.38 16 36 H 0.10 3.43 7.44 -2.39 -0.02 3.41 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.41 10.50 7.73 -92.71 -0.72 9.78 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.10 1.16 7.32 -2.38 -0.02 1.14 16 42 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.09 0.98 5.35 -2.39 -0.01 0.96 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 1.30 7.00 -2.39 -0.02 1.29 16 51 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -68.76 397.43 0.20 -68.56 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.51 Total: 32.18 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.76 Total: 8.88 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -6.98 Total: -117.19 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.10 Total: -38.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.76 0.20 -68.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.505 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds