Wall clock time and date at job start Fri Apr 10 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 H 1.08998 * 109.47310 * 175.73013 * 3 2 1 5 5 C 1.50704 * 109.46929 * 55.73076 * 3 2 1 6 6 H 1.07997 * 119.99858 * 243.83900 * 5 3 2 7 7 C 1.37879 * 119.99613 * 63.84609 * 5 3 2 8 8 N 1.31509 * 120.00333 * 9.73222 * 7 5 3 9 9 Si 1.86806 * 119.99530 * 189.73250 * 7 5 3 10 10 H 1.48502 * 109.46952 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47296 * 299.99962 * 9 7 5 12 12 H 1.48499 * 109.46881 * 60.00137 * 9 7 5 13 13 N 1.46898 * 109.47276 * 295.73376 * 3 2 1 14 14 C 1.46899 * 111.00029 * 278.12258 * 13 3 2 15 15 C 1.50697 * 109.47411 * 185.39741 * 14 13 3 16 16 O 1.21281 * 119.99973 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00079 * 179.97438 * 17 15 14 19 19 H 1.09007 * 109.47046 * 324.99465 * 18 17 15 20 20 C 1.52998 * 109.47362 * 84.99183 * 18 17 15 21 21 C 1.50695 * 109.47238 * 204.99796 * 18 17 15 22 22 O 1.21288 * 119.99887 * 333.66211 * 21 18 17 23 23 N 1.34776 * 120.00485 * 153.66646 * 21 18 17 24 24 C 1.46927 * 120.62518 * 4.97614 * 23 21 18 25 25 C 1.53632 * 108.54127 * 126.37326 * 24 23 21 26 26 C 1.53037 * 109.23977 * 54.85405 * 25 24 23 27 27 C 1.53044 * 109.53949 * 298.50670 * 26 25 24 28 28 C 1.46924 * 120.63236 * 185.25562 * 23 21 18 29 29 H 1.09001 * 109.47238 * 305.11653 * 1 2 3 30 30 H 1.09008 * 109.46992 * 65.11180 * 1 2 3 31 31 H 1.09004 * 109.47298 * 185.11291 * 1 2 3 32 32 H 1.09003 * 109.47270 * 239.99832 * 2 1 3 33 33 H 1.08997 * 109.47015 * 119.99662 * 2 1 3 34 34 H 0.96999 * 119.99858 * 356.47345 * 8 7 5 35 35 H 1.00901 * 110.99936 * 42.07155 * 13 3 2 36 36 H 1.09011 * 109.46950 * 305.39121 * 14 13 3 37 37 H 1.09003 * 109.47658 * 65.38766 * 14 13 3 38 38 H 0.97001 * 120.00141 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47281 * 304.57216 * 20 18 17 40 40 H 1.08996 * 109.46955 * 64.57322 * 20 18 17 41 41 H 1.09000 * 109.47098 * 184.57362 * 20 18 17 42 42 H 1.09003 * 109.58426 * 246.20011 * 24 23 21 43 43 H 1.08994 * 109.59180 * 6.63049 * 24 23 21 44 44 H 1.08995 * 109.62892 * 294.86097 * 25 24 23 45 45 H 1.08998 * 109.42967 * 174.72076 * 25 24 23 46 46 H 1.09004 * 109.45665 * 178.49409 * 26 25 24 47 47 H 1.08997 * 109.46608 * 58.53362 * 26 25 24 48 48 H 1.09001 * 109.49706 * 301.42151 * 27 26 25 49 49 H 1.09003 * 109.49790 * 181.31735 * 27 26 25 50 50 H 1.08996 * 109.58766 * 353.37301 * 28 23 21 51 51 H 1.09006 * 109.58126 * 113.79823 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0765 5 6 1.4531 2.1828 1.1742 6 1 0.7913 3.0200 1.0086 7 6 1.7612 1.7912 2.4598 8 7 2.7087 0.9031 2.6675 9 14 0.8327 2.5221 3.9066 10 1 1.3493 1.9399 5.1713 11 1 1.0239 3.9946 3.9245 12 1 -0.6135 2.2123 3.7740 13 7 1.6363 2.1047 -1.2476 14 6 2.5573 1.7714 -2.3424 15 6 2.1912 2.5691 -3.5674 16 8 1.2548 3.3390 -3.5321 17 7 2.9036 2.4260 -4.7025 18 6 2.5473 3.2011 -5.8935 19 1 1.4649 3.3216 -5.9382 20 6 3.2112 4.5778 -5.8236 21 6 3.0232 2.4758 -7.1257 22 8 3.9699 1.7207 -7.0573 23 7 2.3970 2.6662 -8.3039 24 6 1.3199 3.6578 -8.4273 25 6 1.6581 4.6044 -9.5892 26 6 1.9022 3.7810 -10.8558 27 6 3.0925 2.8445 -10.6361 28 6 2.7743 1.8819 -9.4876 29 1 -0.3634 0.5912 0.8406 30 1 -0.3633 0.4325 -0.9323 31 1 -0.3634 -1.0236 0.0916 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.1557 0.4857 1.9146 35 1 0.6857 1.8694 -1.4906 36 1 3.5780 2.0114 -2.0443 37 1 2.4852 0.7071 -2.5668 38 1 3.6523 1.8099 -4.7309 39 1 2.9305 5.0697 -4.8923 40 1 4.2943 4.4611 -5.8608 41 1 2.8817 5.1833 -6.6680 42 1 0.3768 3.1497 -8.6291 43 1 1.2396 4.2274 -7.5016 44 1 2.5548 5.1748 -9.3475 45 1 0.8251 5.2877 -9.7543 46 1 2.1162 4.4509 -11.6887 47 1 1.0137 3.1919 -11.0830 48 1 3.9757 3.4316 -10.3846 49 1 3.2804 2.2752 -11.5464 50 1 3.6541 1.2794 -9.2615 51 1 1.9474 1.2319 -9.7740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:59 Heat of formation + Delta-G solvation = -81.765385 kcal Electronic energy + Delta-G solvation = -28390.879138 eV Core-core repulsion = 24517.627547 eV Total energy + Delta-G solvation = -3873.251591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91103 -39.35035 -37.79614 -36.59320 -35.01822 -33.42662 -32.70580 -31.79213 -30.93233 -30.28665 -27.00403 -26.29327 -24.84434 -24.10007 -23.54782 -23.16694 -21.31965 -20.31542 -19.56319 -19.32543 -18.00344 -17.09425 -16.77949 -16.06551 -15.74179 -15.57793 -15.12051 -14.98376 -14.74302 -14.53398 -14.26076 -13.90350 -13.70560 -13.63922 -13.50730 -13.27138 -13.10027 -12.86320 -12.65065 -12.50394 -12.31963 -11.95950 -11.78047 -11.70889 -11.66151 -11.47360 -11.21339 -11.09817 -11.07360 -10.72759 -10.27382 -10.09320 -10.07524 -10.03723 -9.86123 -9.60131 -9.17735 -9.05910 -8.66594 -8.16189 -7.32561 -6.28075 -3.95219 2.16218 2.42266 2.88232 3.26058 3.49939 3.50880 3.69712 3.98355 4.23502 4.36055 4.41352 4.56489 4.57643 4.76250 4.79724 4.84490 4.96337 5.02922 5.08066 5.24570 5.27938 5.29637 5.34368 5.38231 5.41604 5.42327 5.54419 5.56690 5.59564 5.74086 5.80729 5.81276 5.94307 6.05379 6.11340 6.14802 6.32407 6.37125 6.67975 6.91903 6.95503 7.01667 7.24524 7.32930 7.54592 7.72076 7.90948 8.27943 8.37585 8.49504 8.70023 8.96005 9.72095 11.08702 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.002176 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.589698 B =12861.899486 C =13097.911602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.027 0.973 5 C -0.571 4.571 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.659 5.659 14 C 0.042 3.958 15 C 0.519 3.481 16 O -0.522 6.522 17 N -0.726 5.726 18 C 0.128 3.872 19 H 0.108 0.892 20 C -0.159 4.159 21 C 0.517 3.483 22 O -0.535 6.535 23 N -0.609 5.609 24 C 0.099 3.901 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.135 4.135 28 C 0.110 3.890 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.268 0.732 35 H 0.338 0.662 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.408 0.592 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 4.068 -28.262 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.193 4.193 3 C 0.097 3.903 4 H 0.045 0.955 5 C -0.610 4.610 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.291 5.291 14 C -0.091 4.091 15 C 0.306 3.694 16 O -0.396 6.396 17 N -0.383 5.383 18 C 0.019 3.981 19 H 0.126 0.874 20 C -0.217 4.217 21 C 0.305 3.695 22 O -0.411 6.411 23 N -0.343 5.343 24 C -0.024 4.024 25 C -0.174 4.174 26 C -0.159 4.159 27 C -0.173 4.173 28 C -0.013 4.013 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.244 0.756 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.112 0.888 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.791 4.822 -26.357 26.806 hybrid contribution 0.214 -1.261 -2.106 2.464 sum -0.577 3.561 -28.463 28.691 Atomic orbital electron populations 1.21606 0.96678 0.99189 1.01555 1.22259 0.96305 1.01276 0.99494 1.19393 0.95583 0.88382 0.86984 0.95536 1.21790 1.31559 1.16803 0.90802 0.92458 1.25719 0.96099 0.96660 1.00076 1.70822 1.21230 1.28077 1.35095 0.83565 0.75533 0.75719 0.75622 1.21047 1.21497 1.21494 1.60478 1.04551 1.62573 1.01464 1.21798 1.00311 0.96371 0.90657 1.21073 0.81807 0.82762 0.83805 1.90669 1.28674 1.36772 1.83501 1.45922 1.36071 1.45962 1.10311 1.20705 1.01855 0.91857 0.83680 0.87438 1.22136 1.01411 0.94397 1.03775 1.20751 0.82455 0.81751 0.84577 1.90691 1.27258 1.38049 1.85146 1.48051 1.36987 1.39651 1.09660 1.22013 0.89870 0.90291 1.00236 1.22000 1.02662 0.97864 0.94827 1.21528 0.98470 0.98329 0.97531 1.21917 0.98827 0.98260 0.98278 1.21632 1.01770 0.93601 0.84264 0.90736 0.94816 0.95277 0.96107 0.91310 0.92090 0.84308 0.88599 0.93406 0.75580 0.90126 0.91658 0.91373 0.90794 0.89014 0.91230 0.90324 0.91515 0.91621 0.91418 0.90627 0.88835 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.38 37.15 0.35 -2.45 16 2 C -0.15 -3.47 5.45 -26.73 -0.15 -3.62 16 3 C 0.20 5.04 1.95 -68.86 -0.13 4.90 16 4 H 0.03 0.71 7.19 -51.93 -0.37 0.33 16 5 C -0.57 -15.80 7.23 -34.44 -0.25 -16.05 16 6 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 7 C 0.02 0.50 5.22 -17.82 -0.09 0.41 16 8 N -0.92 -26.95 13.10 55.43 0.73 -26.23 16 9 Si 1.07 25.30 29.92 -169.99 -5.09 20.22 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.66 -14.52 5.75 -109.22 -0.63 -15.15 16 14 C 0.04 0.74 5.97 -4.98 -0.03 0.71 16 15 C 0.52 8.68 7.85 -10.99 -0.09 8.60 16 16 O -0.52 -10.31 15.98 5.56 0.09 -10.22 16 17 N -0.73 -9.77 5.05 -54.94 -0.28 -10.05 16 18 C 0.13 1.47 2.11 -69.09 -0.15 1.33 16 19 H 0.11 1.24 6.10 -51.92 -0.32 0.92 16 20 C -0.16 -1.62 9.28 37.16 0.34 -1.28 16 21 C 0.52 5.88 6.89 -10.99 -0.08 5.80 16 22 O -0.54 -7.62 15.45 5.55 0.09 -7.53 16 23 N -0.61 -5.24 2.97 -172.50 -0.51 -5.75 16 24 C 0.10 0.61 6.07 -3.48 -0.02 0.59 16 25 C -0.14 -0.65 6.10 -26.38 -0.16 -0.81 16 26 C -0.12 -0.55 5.88 -26.69 -0.16 -0.71 16 27 C -0.13 -0.74 6.08 -26.61 -0.16 -0.90 16 28 C 0.11 0.81 6.44 -3.71 -0.02 0.79 16 29 H 0.07 1.73 6.90 -51.93 -0.36 1.37 16 30 H 0.03 0.65 6.64 -51.92 -0.34 0.31 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.42 7.26 -51.93 -0.38 0.04 16 33 H 0.07 1.71 6.30 -51.93 -0.33 1.38 16 34 H 0.27 7.80 5.88 -40.82 -0.24 7.56 16 35 H 0.34 7.40 6.56 -39.29 -0.26 7.15 16 36 H 0.10 1.66 7.93 -51.92 -0.41 1.24 16 37 H 0.05 0.79 7.31 -51.93 -0.38 0.41 16 38 H 0.41 5.17 7.80 -40.82 -0.32 4.85 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.53 7.18 -51.93 -0.37 0.15 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.57 4.81 -51.93 -0.25 0.32 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.84 7.00 -51.93 -0.36 0.48 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -33.12 393.69 -9.01 -42.13 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.55 Total: 9.33 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.79 Total: -2.68 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.69 Total: -57.17 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.76 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.12 -9.01 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.636 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds