Wall clock time and date at job start Fri Apr 10 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 H 1.08998 * 109.47310 * 175.73013 * 3 2 1 5 5 C 1.50704 * 109.46929 * 55.73076 * 3 2 1 6 6 H 1.07997 * 119.99858 * 243.83900 * 5 3 2 7 7 C 1.37879 * 119.99613 * 63.84609 * 5 3 2 8 8 N 1.31509 * 120.00333 * 9.73222 * 7 5 3 9 9 Si 1.86806 * 119.99530 * 189.73250 * 7 5 3 10 10 H 1.48502 * 109.46952 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47296 * 299.99962 * 9 7 5 12 12 H 1.48499 * 109.46881 * 60.00137 * 9 7 5 13 13 N 1.46898 * 109.47276 * 295.73376 * 3 2 1 14 14 C 1.46899 * 111.00029 * 278.12258 * 13 3 2 15 15 C 1.50697 * 109.47411 * 185.39741 * 14 13 3 16 16 O 1.21281 * 119.99973 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00149 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00079 * 179.97438 * 17 15 14 19 19 H 1.09007 * 109.47046 * 324.99465 * 18 17 15 20 20 C 1.52998 * 109.47362 * 84.99183 * 18 17 15 21 21 C 1.50695 * 109.47238 * 204.99796 * 18 17 15 22 22 O 1.21288 * 119.99887 * 333.66211 * 21 18 17 23 23 N 1.34776 * 120.00485 * 153.66646 * 21 18 17 24 24 C 1.46927 * 120.62518 * 4.97614 * 23 21 18 25 25 C 1.53632 * 108.54127 * 126.37326 * 24 23 21 26 26 C 1.53037 * 109.23977 * 54.85405 * 25 24 23 27 27 C 1.53044 * 109.53949 * 298.50670 * 26 25 24 28 28 C 1.46924 * 120.63236 * 185.25562 * 23 21 18 29 29 H 1.09001 * 109.47238 * 305.11653 * 1 2 3 30 30 H 1.09008 * 109.46992 * 65.11180 * 1 2 3 31 31 H 1.09004 * 109.47298 * 185.11291 * 1 2 3 32 32 H 1.09003 * 109.47270 * 239.99832 * 2 1 3 33 33 H 1.08997 * 109.47015 * 119.99662 * 2 1 3 34 34 H 0.96999 * 119.99858 * 356.47345 * 8 7 5 35 35 H 1.00901 * 110.99936 * 42.07155 * 13 3 2 36 36 H 1.09011 * 109.46950 * 305.39121 * 14 13 3 37 37 H 1.09003 * 109.47658 * 65.38766 * 14 13 3 38 38 H 0.97001 * 120.00141 * 359.97438 * 17 15 14 39 39 H 1.09001 * 109.47281 * 304.57216 * 20 18 17 40 40 H 1.08996 * 109.46955 * 64.57322 * 20 18 17 41 41 H 1.09000 * 109.47098 * 184.57362 * 20 18 17 42 42 H 1.09003 * 109.58426 * 246.20011 * 24 23 21 43 43 H 1.08994 * 109.59180 * 6.63049 * 24 23 21 44 44 H 1.08995 * 109.62892 * 294.86097 * 25 24 23 45 45 H 1.08998 * 109.42967 * 174.72076 * 25 24 23 46 46 H 1.09004 * 109.45665 * 178.49409 * 26 25 24 47 47 H 1.08997 * 109.46608 * 58.53362 * 26 25 24 48 48 H 1.09001 * 109.49706 * 301.42151 * 27 26 25 49 49 H 1.09003 * 109.49790 * 181.31735 * 27 26 25 50 50 H 1.08996 * 109.58766 * 353.37301 * 28 23 21 51 51 H 1.09006 * 109.58126 * 113.79823 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4435 0.0765 5 6 1.4531 2.1828 1.1742 6 1 0.7913 3.0200 1.0086 7 6 1.7612 1.7912 2.4598 8 7 2.7087 0.9031 2.6675 9 14 0.8327 2.5221 3.9066 10 1 1.3493 1.9399 5.1713 11 1 1.0239 3.9946 3.9245 12 1 -0.6135 2.2123 3.7740 13 7 1.6363 2.1047 -1.2476 14 6 2.5573 1.7714 -2.3424 15 6 2.1912 2.5691 -3.5674 16 8 1.2548 3.3390 -3.5321 17 7 2.9036 2.4260 -4.7025 18 6 2.5473 3.2011 -5.8935 19 1 1.4649 3.3216 -5.9382 20 6 3.2112 4.5778 -5.8236 21 6 3.0232 2.4758 -7.1257 22 8 3.9699 1.7207 -7.0573 23 7 2.3970 2.6662 -8.3039 24 6 1.3199 3.6578 -8.4273 25 6 1.6581 4.6044 -9.5892 26 6 1.9022 3.7810 -10.8558 27 6 3.0925 2.8445 -10.6361 28 6 2.7743 1.8819 -9.4876 29 1 -0.3634 0.5912 0.8406 30 1 -0.3633 0.4325 -0.9323 31 1 -0.3634 -1.0236 0.0916 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.1557 0.4857 1.9146 35 1 0.6857 1.8694 -1.4906 36 1 3.5780 2.0114 -2.0443 37 1 2.4852 0.7071 -2.5668 38 1 3.6523 1.8099 -4.7309 39 1 2.9305 5.0697 -4.8923 40 1 4.2943 4.4611 -5.8608 41 1 2.8817 5.1833 -6.6680 42 1 0.3768 3.1497 -8.6291 43 1 1.2396 4.2274 -7.5016 44 1 2.5548 5.1748 -9.3475 45 1 0.8251 5.2877 -9.7543 46 1 2.1162 4.4509 -11.6887 47 1 1.0137 3.1919 -11.0830 48 1 3.9757 3.4316 -10.3846 49 1 3.2804 2.2752 -11.5464 50 1 3.6541 1.2794 -9.2615 51 1 1.9474 1.2319 -9.7740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:58 Heat of formation + Delta-G solvation = -104.765102 kcal Electronic energy + Delta-G solvation = -28391.876481 eV Core-core repulsion = 24517.627547 eV Total energy + Delta-G solvation = -3874.248933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80241 -40.56513 -38.61253 -38.30260 -36.16017 -34.62676 -34.07965 -32.74892 -32.27410 -31.37546 -28.69234 -27.03470 -26.43724 -25.45426 -24.85919 -23.92409 -22.05146 -21.51528 -21.36666 -20.09974 -19.24633 -18.50501 -17.97238 -17.36557 -16.95200 -16.52863 -16.18545 -16.04663 -15.73058 -15.49086 -15.39299 -15.21409 -15.03526 -14.83589 -14.71988 -14.32352 -14.27729 -14.05037 -13.72342 -13.54105 -13.42879 -13.31252 -13.20863 -13.03055 -12.76926 -12.59381 -12.24830 -12.09325 -11.93382 -11.90655 -11.90030 -11.69612 -11.67372 -11.51606 -11.08615 -10.93366 -10.66690 -10.31245 -10.28335 -9.76786 -9.07578 -8.50431 -6.18121 1.25409 1.53766 1.57079 1.62055 1.63779 1.83232 2.19048 2.61767 3.19624 3.26377 3.56337 3.72443 3.80996 3.91126 3.92017 3.98235 4.00392 4.09379 4.24844 4.31088 4.32309 4.37772 4.41204 4.44944 4.50995 4.55311 4.57108 4.65364 4.77957 4.87669 4.90269 4.92075 5.01773 5.07584 5.08667 5.13894 5.20345 5.20735 5.25551 5.39072 5.43043 5.47518 5.55946 5.93442 6.16913 6.20502 6.34289 6.55799 6.67185 6.80722 6.88367 7.13638 7.55870 8.86981 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029051 B = 0.002176 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.589698 B =12861.899486 C =13097.911602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.209 3.791 4 H 0.002 0.998 5 C -0.578 4.578 6 H 0.041 0.959 7 C -0.026 4.026 8 N -0.937 5.937 9 Si 1.107 2.893 10 H -0.286 1.286 11 H -0.278 1.278 12 H -0.271 1.271 13 N -0.671 5.671 14 C 0.041 3.959 15 C 0.526 3.474 16 O -0.555 6.555 17 N -0.713 5.713 18 C 0.126 3.874 19 H 0.111 0.889 20 C -0.152 4.152 21 C 0.517 3.483 22 O -0.571 6.571 23 N -0.602 5.602 24 C 0.091 3.909 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.129 4.129 28 C 0.105 3.895 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.259 0.741 35 H 0.338 0.662 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 4.486 -30.374 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.100 3.900 4 H 0.020 0.980 5 C -0.617 4.617 6 H 0.059 0.941 7 C -0.224 4.224 8 N -0.575 5.575 9 Si 0.931 3.069 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.197 1.197 13 N -0.303 5.303 14 C -0.092 4.092 15 C 0.313 3.687 16 O -0.432 6.432 17 N -0.369 5.369 18 C 0.018 3.982 19 H 0.129 0.871 20 C -0.210 4.210 21 C 0.304 3.696 22 O -0.450 6.450 23 N -0.335 5.335 24 C -0.030 4.030 25 C -0.170 4.170 26 C -0.157 4.157 27 C -0.167 4.167 28 C -0.017 4.017 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.091 0.909 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.993 5.250 -28.547 29.094 hybrid contribution 0.608 -1.384 -1.597 2.199 sum -1.384 3.866 -30.144 30.423 Atomic orbital electron populations 1.21519 0.95280 1.00326 1.01252 1.22111 0.97473 0.99623 0.99328 1.19174 0.93819 0.89517 0.87481 0.98018 1.22020 1.30990 1.16448 0.92246 0.94075 1.26926 0.96133 0.96532 1.02797 1.70924 1.22483 1.29370 1.34773 0.83036 0.75383 0.75596 0.72897 1.21190 1.20428 1.19683 1.60304 1.05253 1.62869 1.01914 1.21826 0.99466 0.97796 0.90093 1.20731 0.81584 0.82181 0.84176 1.90657 1.30211 1.38192 1.84100 1.45774 1.35330 1.45646 1.10131 1.20863 1.02167 0.92195 0.82965 0.87121 1.22078 1.01144 0.93783 1.04025 1.20655 0.82292 0.81438 0.85222 1.90678 1.28908 1.39724 1.85722 1.48160 1.36682 1.39568 1.09072 1.22256 0.89554 0.90192 1.01041 1.21999 1.03108 0.97686 0.94206 1.21538 0.98165 0.98280 0.97677 1.21885 0.98904 0.98050 0.97893 1.21766 1.01490 0.94068 0.84355 0.93293 0.93245 0.92950 0.93714 0.93885 0.93042 0.84266 0.88327 0.91420 0.74988 0.91912 0.91900 0.88596 0.89510 0.89047 0.91799 0.88567 0.90480 0.90811 0.92577 0.89195 0.90853 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.38 71.98 0.68 -4.50 16 2 C -0.15 -6.53 5.45 30.59 0.17 -6.36 16 3 C 0.21 10.39 1.95 44.17 0.09 10.47 16 4 H 0.00 0.11 7.19 -2.39 -0.02 0.09 16 5 C -0.58 -32.46 7.23 25.60 0.19 -32.28 16 6 H 0.04 2.40 7.83 -2.91 -0.02 2.37 16 7 C -0.03 -1.45 5.22 84.66 0.44 -1.01 16 8 N -0.94 -56.08 13.10 21.45 0.28 -55.80 16 9 Si 1.11 51.02 29.92 68.60 2.05 53.08 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.67 -29.56 5.75 -499.45 -2.87 -32.44 16 14 C 0.04 1.43 5.97 85.56 0.51 1.95 16 15 C 0.53 17.34 7.85 87.66 0.69 18.03 16 16 O -0.55 -21.71 15.98 -3.03 -0.05 -21.76 16 17 N -0.71 -18.75 5.05 -446.10 -2.25 -21.01 16 18 C 0.13 2.79 2.11 44.24 0.09 2.89 16 19 H 0.11 2.42 6.10 -2.38 -0.01 2.41 16 20 C -0.15 -2.96 9.28 71.98 0.67 -2.29 16 21 C 0.52 11.32 6.89 87.66 0.60 11.93 16 22 O -0.57 -16.18 15.45 -3.06 -0.05 -16.22 16 23 N -0.60 -9.48 2.97 -818.05 -2.43 -11.91 16 24 C 0.09 0.93 6.07 86.51 0.53 1.46 16 25 C -0.13 -0.91 6.10 30.82 0.19 -0.73 16 26 C -0.12 -0.74 5.88 30.62 0.18 -0.56 16 27 C -0.13 -1.17 6.08 30.67 0.19 -0.99 16 28 C 0.10 1.42 6.44 86.36 0.56 1.97 16 29 H 0.05 2.24 6.90 -2.39 -0.02 2.23 16 30 H 0.05 1.84 6.64 -2.38 -0.02 1.82 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.76 7.26 -2.39 -0.02 1.74 16 33 H 0.04 2.15 6.30 -2.39 -0.02 2.13 16 34 H 0.26 15.51 5.88 -92.71 -0.54 14.96 16 35 H 0.34 14.66 6.56 -89.69 -0.59 14.07 16 36 H 0.10 3.40 7.93 -2.38 -0.02 3.38 16 37 H 0.07 2.13 7.31 -2.39 -0.02 2.11 16 38 H 0.41 10.23 7.80 -92.71 -0.72 9.50 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.31 7.18 -2.39 -0.02 1.29 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.95 4.81 -2.39 -0.01 0.94 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.07 1.31 7.00 -2.39 -0.02 1.29 16 51 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -72.15 393.69 0.29 -71.86 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.15 Total: 34.21 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.75 Total: -0.03 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -7.27 Total: -121.14 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.10 Total: -37.98 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.08 kcal Total: -72.15 0.29 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.903 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds