Wall clock time and date at job start Fri Apr 10 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46980 * 2 1 4 4 H 1.08993 * 109.47358 * 54.35927 * 3 2 1 5 5 C 1.50707 * 109.46949 * 174.35828 * 3 2 1 6 6 H 1.08000 * 119.99736 * 119.99686 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00041 * 5 3 2 8 8 N 1.31513 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47488 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46933 * 119.99873 * 9 7 5 12 12 H 1.48498 * 109.47263 * 239.99693 * 9 7 5 13 13 N 1.46897 * 109.47269 * 294.35701 * 3 2 1 14 14 C 1.46901 * 110.99994 * 158.20554 * 13 3 2 15 15 C 1.50708 * 109.47094 * 174.70991 * 14 13 3 16 16 O 1.21281 * 120.00058 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99790 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00065 * 180.02562 * 17 15 14 19 19 H 1.09009 * 109.46941 * 324.99552 * 18 17 15 20 20 C 1.52997 * 109.47565 * 84.99350 * 18 17 15 21 21 C 1.50700 * 109.47379 * 204.99899 * 18 17 15 22 22 O 1.21278 * 119.99982 * 351.83825 * 21 18 17 23 23 N 1.34778 * 120.00060 * 171.57448 * 21 18 17 24 24 C 1.46924 * 120.62776 * 176.88221 * 23 21 18 25 25 C 1.53625 * 108.54436 * 126.36768 * 24 23 21 26 26 C 1.53044 * 109.24491 * 54.85078 * 25 24 23 27 27 C 1.53042 * 109.53803 * 298.51541 * 26 25 24 28 28 C 1.46922 * 120.63041 * 357.15564 * 23 21 18 29 29 H 1.08996 * 109.47600 * 66.07357 * 1 2 3 30 30 H 1.08998 * 109.46965 * 186.08145 * 1 2 3 31 31 H 1.09008 * 109.47073 * 306.07781 * 1 2 3 32 32 H 1.09005 * 109.46557 * 240.00082 * 2 1 3 33 33 H 1.08997 * 109.47134 * 119.99980 * 2 1 3 34 34 H 0.96994 * 120.00141 * 180.02562 * 8 7 5 35 35 H 1.00902 * 111.00131 * 34.24728 * 13 3 2 36 36 H 1.09003 * 109.47359 * 54.71154 * 14 13 3 37 37 H 1.08994 * 109.47322 * 294.70546 * 14 13 3 38 38 H 0.96995 * 120.00554 * 359.97438 * 17 15 14 39 39 H 1.09000 * 109.47311 * 65.21671 * 20 18 17 40 40 H 1.09000 * 109.47359 * 185.21985 * 20 18 17 41 41 H 1.09008 * 109.47134 * 305.21480 * 20 18 17 42 42 H 1.09005 * 109.58385 * 246.19623 * 24 23 21 43 43 H 1.08991 * 109.59039 * 6.62352 * 24 23 21 44 44 H 1.09003 * 109.63349 * 294.86264 * 25 24 23 45 45 H 1.08993 * 109.43676 * 174.72335 * 25 24 23 46 46 H 1.08995 * 109.46500 * 178.49728 * 26 25 24 47 47 H 1.09001 * 109.45392 * 58.53086 * 26 25 24 48 48 H 1.09001 * 109.49623 * 301.41044 * 27 26 25 49 49 H 1.08998 * 109.49876 * 181.30926 * 27 26 25 50 50 H 1.08996 * 109.58779 * 353.37866 * 28 23 21 51 51 H 1.09004 * 109.58677 * 113.80417 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9846 0.8351 5 6 3.5405 1.4447 0.1397 6 1 4.1539 1.8864 -0.6317 7 6 4.1301 0.8830 1.2522 8 7 3.3832 0.3447 2.1913 9 14 5.9901 0.8852 1.4250 10 1 6.5965 1.5459 0.2414 11 1 6.3722 1.6255 2.6544 12 1 6.4804 -0.5135 1.5170 13 7 1.6646 2.0945 -1.2617 14 6 1.6580 3.5564 -1.1171 15 6 1.3971 4.1926 -2.4582 16 8 1.2333 3.4968 -3.4379 17 7 1.3468 5.5348 -2.5688 18 6 1.0926 6.1534 -3.8723 19 1 1.5611 5.5567 -4.6551 20 6 -0.4158 6.2232 -4.1183 21 6 1.6693 7.5456 -3.8888 22 8 2.1041 8.0339 -2.8674 23 7 1.7067 8.2459 -5.0397 24 6 2.2029 9.6287 -5.0587 25 6 3.3093 9.7363 -6.1190 26 6 2.7689 9.2442 -7.4637 27 6 2.3585 7.7747 -7.3436 28 6 1.2465 7.6431 -6.2981 29 1 -0.3634 0.4168 -0.9393 30 1 -0.3633 -1.0219 0.1089 31 1 -0.3634 0.6052 0.8306 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.7980 -0.0502 2.9741 35 1 0.7713 1.7595 -1.5901 36 1 2.6251 3.8886 -0.7394 37 1 0.8748 3.8488 -0.4178 38 1 1.4782 6.0914 -1.7854 39 1 -0.8720 6.8944 -3.3905 40 1 -0.6029 6.5974 -5.1248 41 1 -0.8474 5.2275 -4.0148 42 1 1.3865 10.3064 -5.3085 43 1 2.6070 9.8854 -4.0796 44 1 4.1610 9.1237 -5.8231 45 1 3.6231 10.7759 -6.2115 46 1 3.5429 9.3440 -8.2246 47 1 1.9021 9.8413 -7.7470 48 1 3.2191 7.1806 -7.0361 49 1 1.9955 7.4184 -8.3076 50 1 1.0194 6.5893 -6.1369 51 1 0.3538 8.1622 -6.6469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594009492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:02 Heat of formation + Delta-G solvation = -79.137201 kcal Electronic energy + Delta-G solvation = -28408.785866 eV Core-core repulsion = 24535.648242 eV Total energy + Delta-G solvation = -3873.137624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84139 -39.20801 -37.69576 -36.11703 -34.93156 -33.38375 -32.43512 -31.73668 -31.18755 -30.27575 -27.14510 -26.27790 -25.27029 -24.05069 -23.37880 -22.46515 -21.11011 -20.11971 -19.54896 -19.43318 -17.63212 -16.90864 -16.35706 -16.15294 -15.73682 -15.35851 -15.18464 -14.89568 -14.65257 -14.42158 -14.32173 -14.02348 -13.79541 -13.61671 -13.51862 -13.18661 -12.83502 -12.65675 -12.50346 -12.31579 -12.08431 -12.07531 -11.79412 -11.70011 -11.38234 -11.26794 -11.12043 -11.08555 -11.00600 -10.84212 -10.56818 -10.00170 -9.96226 -9.91458 -9.60704 -9.29003 -9.05682 -9.03105 -8.98712 -8.32951 -7.20506 -5.95061 -3.99250 2.28923 2.49090 3.03954 3.33670 3.35359 3.41861 3.48038 4.05723 4.30001 4.43260 4.47608 4.48557 4.63396 4.82441 4.84766 4.89404 5.04142 5.06793 5.17781 5.30320 5.32908 5.35671 5.41225 5.43188 5.46802 5.50580 5.59924 5.63632 5.66266 5.89242 5.91880 5.97399 6.12805 6.16243 6.22353 6.26835 6.46330 6.49190 6.89625 6.99914 7.10081 7.20242 7.47273 7.69954 7.80717 7.82083 7.94154 8.27260 8.39756 8.57141 8.78285 9.09218 9.66012 11.10310 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002565 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.664787 B =10914.223943 C =11862.838931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.669 5.669 14 C 0.053 3.947 15 C 0.519 3.481 16 O -0.528 6.528 17 N -0.725 5.725 18 C 0.128 3.872 19 H 0.111 0.889 20 C -0.161 4.161 21 C 0.516 3.484 22 O -0.533 6.533 23 N -0.610 5.610 24 C 0.110 3.890 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.138 4.138 28 C 0.100 3.900 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.259 0.741 35 H 0.325 0.675 36 H 0.106 0.894 37 H 0.046 0.954 38 H 0.409 0.591 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 18.712 -17.538 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.302 5.302 14 C -0.080 4.080 15 C 0.306 3.694 16 O -0.403 6.403 17 N -0.381 5.381 18 C 0.018 3.982 19 H 0.128 0.872 20 C -0.219 4.219 21 C 0.303 3.697 22 O -0.409 6.409 23 N -0.344 5.344 24 C -0.012 4.012 25 C -0.174 4.174 26 C -0.158 4.158 27 C -0.177 4.177 28 C -0.022 4.022 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.245 0.755 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.110 0.890 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.405 18.326 -17.760 26.311 hybrid contribution 0.292 0.438 0.949 1.085 sum -6.113 18.764 -16.811 25.924 Atomic orbital electron populations 1.21889 0.99581 0.99792 0.99574 1.21728 0.91276 0.99997 1.03182 1.19207 0.95629 0.90250 0.83710 0.98054 1.21256 0.91221 1.36667 1.04192 0.91972 1.24952 0.98138 0.95565 0.95830 1.69879 1.34609 1.39511 1.09566 0.86492 0.85772 0.77626 0.77839 1.19770 1.21232 1.21112 1.60354 1.35034 1.00702 1.34126 1.21683 1.02934 0.92241 0.91133 1.21225 0.74947 0.80886 0.92350 1.90642 1.48262 1.61975 1.39410 1.45902 1.75038 1.07324 1.09881 1.20635 0.96962 0.91089 0.89466 0.87161 1.22211 0.93528 1.03984 1.02210 1.20756 0.78224 0.87560 0.83131 1.90696 1.46987 1.70705 1.32527 1.48021 1.64146 1.14437 1.07800 1.21707 0.96603 0.81784 1.01085 1.21997 0.98422 1.01948 0.95024 1.21519 1.01132 0.95903 0.97202 1.21951 0.99213 0.97418 0.99074 1.21955 0.97045 0.99575 0.83671 0.94475 0.94327 0.93928 0.93838 0.88159 0.93123 0.85639 0.87578 0.93648 0.75465 0.91891 0.91125 0.90406 0.91400 0.88819 0.91314 0.90683 0.91545 0.91715 0.91140 0.90342 0.88974 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.62 37.16 0.36 -2.63 16 2 C -0.12 -2.96 5.38 -26.73 -0.14 -3.10 16 3 C 0.22 5.49 2.02 -68.87 -0.14 5.36 16 4 H 0.00 0.05 7.91 -51.93 -0.41 -0.36 16 5 C -0.49 -13.75 8.37 -34.44 -0.29 -14.04 16 6 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.48 11.29 55.43 0.63 -24.85 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.67 -14.91 5.82 -109.22 -0.64 -15.55 16 14 C 0.05 1.01 5.95 -4.97 -0.03 0.98 16 15 C 0.52 9.07 7.85 -10.98 -0.09 8.98 16 16 O -0.53 -10.63 15.98 5.56 0.09 -10.54 16 17 N -0.72 -10.32 4.99 -54.93 -0.27 -10.60 16 18 C 0.13 1.52 2.13 -69.08 -0.15 1.37 16 19 H 0.11 1.37 6.54 -51.92 -0.34 1.03 16 20 C -0.16 -1.54 9.14 37.16 0.34 -1.20 16 21 C 0.52 6.18 7.06 -10.98 -0.08 6.10 16 22 O -0.53 -8.06 15.24 5.56 0.08 -7.98 16 23 N -0.61 -5.46 2.97 -172.51 -0.51 -5.98 16 24 C 0.11 0.86 6.47 -3.49 -0.02 0.84 16 25 C -0.14 -0.87 6.10 -26.38 -0.16 -1.03 16 26 C -0.12 -0.63 5.88 -26.69 -0.16 -0.79 16 27 C -0.14 -0.80 6.08 -26.61 -0.16 -0.96 16 28 C 0.10 0.64 5.13 -3.71 -0.02 0.62 16 29 H 0.04 0.67 6.67 -51.93 -0.35 0.33 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 2.67 5.94 -51.93 -0.31 2.37 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.33 6.88 6.53 -39.29 -0.26 6.63 16 36 H 0.11 2.13 7.78 -51.93 -0.40 1.72 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 5.57 7.73 -40.82 -0.32 5.26 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.50 6.03 -51.93 -0.31 0.18 16 41 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.90 7.00 -51.93 -0.36 0.54 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.60 4.87 -51.93 -0.25 0.34 16 51 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -32.62 396.72 -9.27 -41.88 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.77 Total: 8.98 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.83 Total: 1.96 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.80 Total: -56.97 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.62 -9.27 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.252 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds