Wall clock time and date at job start Fri Apr 10 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46980 * 2 1 4 4 H 1.08993 * 109.47358 * 54.35927 * 3 2 1 5 5 C 1.50707 * 109.46949 * 174.35828 * 3 2 1 6 6 H 1.08000 * 119.99736 * 119.99686 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00041 * 5 3 2 8 8 N 1.31513 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47488 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46933 * 119.99873 * 9 7 5 12 12 H 1.48498 * 109.47263 * 239.99693 * 9 7 5 13 13 N 1.46897 * 109.47269 * 294.35701 * 3 2 1 14 14 C 1.46901 * 110.99994 * 158.20554 * 13 3 2 15 15 C 1.50708 * 109.47094 * 174.70991 * 14 13 3 16 16 O 1.21281 * 120.00058 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99790 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00065 * 180.02562 * 17 15 14 19 19 H 1.09009 * 109.46941 * 324.99552 * 18 17 15 20 20 C 1.52997 * 109.47565 * 84.99350 * 18 17 15 21 21 C 1.50700 * 109.47379 * 204.99899 * 18 17 15 22 22 O 1.21278 * 119.99982 * 351.83825 * 21 18 17 23 23 N 1.34778 * 120.00060 * 171.57448 * 21 18 17 24 24 C 1.46924 * 120.62776 * 176.88221 * 23 21 18 25 25 C 1.53625 * 108.54436 * 126.36768 * 24 23 21 26 26 C 1.53044 * 109.24491 * 54.85078 * 25 24 23 27 27 C 1.53042 * 109.53803 * 298.51541 * 26 25 24 28 28 C 1.46922 * 120.63041 * 357.15564 * 23 21 18 29 29 H 1.08996 * 109.47600 * 66.07357 * 1 2 3 30 30 H 1.08998 * 109.46965 * 186.08145 * 1 2 3 31 31 H 1.09008 * 109.47073 * 306.07781 * 1 2 3 32 32 H 1.09005 * 109.46557 * 240.00082 * 2 1 3 33 33 H 1.08997 * 109.47134 * 119.99980 * 2 1 3 34 34 H 0.96994 * 120.00141 * 180.02562 * 8 7 5 35 35 H 1.00902 * 111.00131 * 34.24728 * 13 3 2 36 36 H 1.09003 * 109.47359 * 54.71154 * 14 13 3 37 37 H 1.08994 * 109.47322 * 294.70546 * 14 13 3 38 38 H 0.96995 * 120.00554 * 359.97438 * 17 15 14 39 39 H 1.09000 * 109.47311 * 65.21671 * 20 18 17 40 40 H 1.09000 * 109.47359 * 185.21985 * 20 18 17 41 41 H 1.09008 * 109.47134 * 305.21480 * 20 18 17 42 42 H 1.09005 * 109.58385 * 246.19623 * 24 23 21 43 43 H 1.08991 * 109.59039 * 6.62352 * 24 23 21 44 44 H 1.09003 * 109.63349 * 294.86264 * 25 24 23 45 45 H 1.08993 * 109.43676 * 174.72335 * 25 24 23 46 46 H 1.08995 * 109.46500 * 178.49728 * 26 25 24 47 47 H 1.09001 * 109.45392 * 58.53086 * 26 25 24 48 48 H 1.09001 * 109.49623 * 301.41044 * 27 26 25 49 49 H 1.08998 * 109.49876 * 181.30926 * 27 26 25 50 50 H 1.08996 * 109.58779 * 353.37866 * 28 23 21 51 51 H 1.09004 * 109.58677 * 113.80417 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9846 0.8351 5 6 3.5405 1.4447 0.1397 6 1 4.1539 1.8864 -0.6317 7 6 4.1301 0.8830 1.2522 8 7 3.3832 0.3447 2.1913 9 14 5.9901 0.8852 1.4250 10 1 6.5965 1.5459 0.2414 11 1 6.3722 1.6255 2.6544 12 1 6.4804 -0.5135 1.5170 13 7 1.6646 2.0945 -1.2617 14 6 1.6580 3.5564 -1.1171 15 6 1.3971 4.1926 -2.4582 16 8 1.2333 3.4968 -3.4379 17 7 1.3468 5.5348 -2.5688 18 6 1.0926 6.1534 -3.8723 19 1 1.5611 5.5567 -4.6551 20 6 -0.4158 6.2232 -4.1183 21 6 1.6693 7.5456 -3.8888 22 8 2.1041 8.0339 -2.8674 23 7 1.7067 8.2459 -5.0397 24 6 2.2029 9.6287 -5.0587 25 6 3.3093 9.7363 -6.1190 26 6 2.7689 9.2442 -7.4637 27 6 2.3585 7.7747 -7.3436 28 6 1.2465 7.6431 -6.2981 29 1 -0.3634 0.4168 -0.9393 30 1 -0.3633 -1.0219 0.1089 31 1 -0.3634 0.6052 0.8306 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 3.7980 -0.0502 2.9741 35 1 0.7713 1.7595 -1.5901 36 1 2.6251 3.8886 -0.7394 37 1 0.8748 3.8488 -0.4178 38 1 1.4782 6.0914 -1.7854 39 1 -0.8720 6.8944 -3.3905 40 1 -0.6029 6.5974 -5.1248 41 1 -0.8474 5.2275 -4.0148 42 1 1.3865 10.3064 -5.3085 43 1 2.6070 9.8854 -4.0796 44 1 4.1610 9.1237 -5.8231 45 1 3.6231 10.7759 -6.2115 46 1 3.5429 9.3440 -8.2246 47 1 1.9021 9.8413 -7.7470 48 1 3.2191 7.1806 -7.0361 49 1 1.9955 7.4184 -8.3076 50 1 1.0194 6.5893 -6.1369 51 1 0.3538 8.1622 -6.6469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:01 Heat of formation + Delta-G solvation = -101.811817 kcal Electronic energy + Delta-G solvation = -28409.769111 eV Core-core repulsion = 24535.648242 eV Total energy + Delta-G solvation = -3874.120869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76714 -40.47580 -38.50573 -37.90930 -36.11404 -34.42767 -34.11542 -33.01856 -32.32139 -31.27135 -28.96650 -27.15507 -26.78103 -24.93248 -24.38818 -23.90773 -21.89333 -21.51223 -21.29837 -20.19374 -18.71373 -18.41266 -17.90024 -17.37456 -16.76844 -16.74218 -16.57307 -16.13862 -15.64675 -15.47901 -15.44571 -15.10801 -14.89919 -14.81003 -14.43520 -14.33418 -14.02477 -13.84448 -13.67417 -13.62610 -13.42334 -13.18760 -13.09212 -12.87423 -12.76408 -12.66294 -12.51852 -12.23640 -12.00153 -11.87568 -11.74928 -11.64207 -11.51639 -11.50058 -11.03832 -10.93381 -10.80113 -10.43405 -10.23683 -9.73850 -9.03268 -8.07578 -6.19288 1.35382 1.39921 1.42441 1.54157 1.56539 1.70159 2.22518 2.44225 3.17849 3.23752 3.68550 3.77731 3.86772 3.93454 3.95321 4.02481 4.05285 4.09974 4.33977 4.41720 4.47674 4.51329 4.54963 4.58215 4.61221 4.63470 4.71376 4.74436 4.80473 4.88537 4.91020 5.02697 5.10165 5.11598 5.14852 5.23011 5.24346 5.31394 5.36621 5.43376 5.50434 5.57610 5.73932 5.87564 6.20548 6.28163 6.37195 6.52551 6.91545 6.93029 6.94337 7.20674 7.49619 8.95919 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002565 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.664787 B =10914.223943 C =11862.838931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.226 3.774 4 H -0.021 1.021 5 C -0.514 4.514 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.052 3.948 15 C 0.527 3.473 16 O -0.556 6.556 17 N -0.714 5.714 18 C 0.125 3.875 19 H 0.107 0.893 20 C -0.152 4.152 21 C 0.513 3.487 22 O -0.574 6.574 23 N -0.602 5.602 24 C 0.107 3.893 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.138 4.138 28 C 0.093 3.907 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.261 0.739 35 H 0.333 0.667 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.049 0.951 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 20.009 -19.442 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.118 3.882 4 H -0.004 1.004 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.081 4.081 15 C 0.314 3.686 16 O -0.433 6.433 17 N -0.369 5.369 18 C 0.017 3.983 19 H 0.124 0.876 20 C -0.210 4.210 21 C 0.301 3.699 22 O -0.453 6.453 23 N -0.335 5.335 24 C -0.015 4.015 25 C -0.171 4.171 26 C -0.154 4.154 27 C -0.176 4.176 28 C -0.029 4.029 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.117 0.883 50 H 0.109 0.891 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.379 19.668 -19.711 28.806 hybrid contribution 0.595 0.117 1.480 1.599 sum -6.784 19.785 -18.231 27.746 Atomic orbital electron populations 1.21752 0.96178 1.01284 1.00485 1.21568 0.94347 0.98706 1.01208 1.18990 0.94194 0.90931 0.84077 1.00357 1.21458 0.92736 1.36990 1.04097 0.93588 1.25626 1.02146 0.95205 0.95542 1.69986 1.36095 1.39723 1.09832 0.85568 0.80929 0.77736 0.77734 1.19966 1.20458 1.20523 1.60216 1.35657 1.02518 1.32639 1.21663 1.02918 0.90657 0.92853 1.20767 0.74923 0.81755 0.91131 1.90627 1.50020 1.62817 1.39864 1.45771 1.73621 1.06255 1.11273 1.20830 0.98781 0.90937 0.87748 0.87580 1.22161 0.91176 1.03486 1.04200 1.20733 0.78119 0.87533 0.83547 1.90680 1.49036 1.71503 1.34109 1.48132 1.62835 1.14708 1.07780 1.21845 0.97818 0.81390 1.00467 1.21979 0.97148 1.02623 0.95303 1.21523 1.01969 0.95574 0.96353 1.21962 0.98262 0.97669 0.99691 1.22235 0.98322 0.99811 0.82490 0.92744 0.92336 0.93983 0.94820 0.90972 0.92935 0.84855 0.89012 0.91691 0.75061 0.91548 0.88048 0.91667 0.89030 0.91164 0.93513 0.89084 0.90907 0.89982 0.93197 0.88317 0.89082 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.62 71.98 0.69 -4.68 16 2 C -0.12 -5.80 5.38 30.59 0.16 -5.64 16 3 C 0.23 11.57 2.02 44.17 0.09 11.66 16 4 H -0.02 -1.16 7.91 -2.39 -0.02 -1.18 16 5 C -0.51 -29.26 8.37 25.60 0.21 -29.05 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.68 -30.52 5.82 -499.46 -2.91 -33.42 16 14 C 0.05 2.00 5.95 85.56 0.51 2.51 16 15 C 0.53 18.51 7.85 87.66 0.69 19.19 16 16 O -0.56 -22.34 15.98 -3.03 -0.05 -22.39 16 17 N -0.71 -20.32 4.99 -446.09 -2.23 -22.55 16 18 C 0.13 2.90 2.13 44.24 0.09 3.00 16 19 H 0.11 2.59 6.54 -2.38 -0.02 2.57 16 20 C -0.15 -2.65 9.14 71.98 0.66 -1.99 16 21 C 0.51 12.06 7.06 87.66 0.62 12.68 16 22 O -0.57 -17.64 15.24 -3.02 -0.05 -17.68 16 23 N -0.60 -9.95 2.97 -818.08 -2.43 -12.37 16 24 C 0.11 1.53 6.47 86.51 0.56 2.09 16 25 C -0.13 -1.50 6.10 30.82 0.19 -1.31 16 26 C -0.12 -0.91 5.88 30.62 0.18 -0.73 16 27 C -0.14 -1.27 6.08 30.67 0.19 -1.09 16 28 C 0.09 0.94 5.13 86.36 0.44 1.39 16 29 H 0.05 1.89 6.67 -2.39 -0.02 1.88 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 3.92 5.94 -2.39 -0.01 3.90 16 34 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.33 13.98 6.53 -89.69 -0.59 13.40 16 36 H 0.09 3.81 7.78 -2.39 -0.02 3.79 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.41 11.34 7.73 -92.71 -0.72 10.63 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.12 6.03 -2.39 -0.01 1.11 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 43 H 0.07 1.36 7.00 -2.39 -0.02 1.35 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.09 0.97 4.87 -2.39 -0.01 0.96 16 51 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -71.77 396.72 -0.03 -71.79 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.37 Total: 32.89 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.73 Total: 9.22 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -7.32 Total: -120.91 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.09 Total: -40.07 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -71.77 -0.03 -71.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.018 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds