Wall clock time and date at job start Fri Apr 10 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47287 * 2 1 4 4 O 1.21275 * 120.00048 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99573 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.50120 * 34.93610 * 6 5 3 8 8 C 1.53048 * 109.49712 * 274.83924 * 6 5 3 9 9 C 1.53043 * 109.53712 * 178.68558 * 8 6 5 10 10 C 1.52764 * 109.38019 * 61.24090 * 9 8 6 11 11 N 1.46928 * 109.01101 * 305.58623 * 10 9 8 12 12 C 1.34773 * 120.63102 * 233.58704 * 11 10 9 13 13 O 1.21284 * 120.00104 * 179.72158 * 12 11 10 14 14 C 1.50699 * 120.00034 * 359.71700 * 12 11 10 15 15 H 1.08998 * 109.47482 * 320.00457 * 14 12 11 16 16 N 1.46904 * 109.47127 * 200.00143 * 14 12 11 17 17 C 1.53004 * 109.47086 * 80.00138 * 14 12 11 18 18 C 1.52992 * 109.47319 * 184.99758 * 17 14 12 19 19 C 1.53004 * 109.47319 * 180.02562 * 18 17 14 20 20 C 1.50700 * 109.47208 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99770 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 300.00001 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00094 * 24 22 20 28 28 C 1.46926 * 118.73654 * 53.31054 * 11 10 9 29 29 H 1.08997 * 109.47875 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47150 * 300.00334 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.99892 * 1 2 3 32 32 H 1.09005 * 109.46667 * 239.99557 * 2 1 3 33 33 H 1.09003 * 109.46975 * 120.00108 * 2 1 3 34 34 H 0.96998 * 119.99645 * 0.02562 * 5 3 2 35 35 H 1.09006 * 109.45956 * 298.70521 * 8 6 5 36 36 H 1.08994 * 109.45619 * 58.66848 * 8 6 5 37 37 H 1.09000 * 109.49735 * 181.31665 * 9 8 6 38 38 H 1.08997 * 109.50095 * 301.38433 * 9 8 6 39 39 H 1.09001 * 109.50485 * 185.70432 * 10 9 8 40 40 H 1.08998 * 109.43657 * 65.42814 * 10 9 8 41 41 H 1.00907 * 110.99628 * 176.04983 * 16 14 12 42 42 H 1.00896 * 110.99888 * 299.99637 * 16 14 12 43 43 H 1.09009 * 109.46730 * 64.99763 * 17 14 12 44 44 H 1.08998 * 109.47285 * 305.00002 * 17 14 12 45 45 H 1.09000 * 109.47364 * 60.00020 * 18 17 14 46 46 H 1.08998 * 109.47610 * 300.00082 * 18 17 14 47 47 H 1.08994 * 109.47074 * 60.00408 * 19 18 17 48 48 H 1.08998 * 109.47285 * 300.00244 * 19 18 17 49 49 H 0.97005 * 119.99661 * 359.97438 * 23 22 20 50 50 H 1.09000 * 109.58427 * 66.42936 * 28 11 10 51 51 H 1.09000 * 109.58482 * 186.70983 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0481 0.0011 7 1 3.1728 3.6718 0.5894 8 6 3.9018 3.5707 -1.4363 9 6 4.3807 5.0243 -1.4341 10 6 5.7858 5.0942 -0.8387 11 7 5.7762 4.4597 0.4865 12 6 6.2360 5.1204 1.5675 13 8 6.2181 4.5875 2.6568 14 6 6.7726 6.5211 1.4226 15 1 7.3582 6.5930 0.5061 16 7 7.6257 6.8403 2.5751 17 6 5.6067 7.5101 1.3617 18 6 6.1445 8.9164 1.0900 19 6 4.9787 9.9055 1.0297 20 6 5.5084 11.2906 0.7615 21 1 6.5703 11.4495 0.6453 22 6 4.6374 12.3549 0.6646 23 7 3.3444 12.1616 0.8067 24 14 5.2939 14.0718 0.3314 25 1 4.1624 15.0317 0.2730 26 1 6.2229 14.4665 1.4207 27 1 6.0183 14.0818 -0.9649 28 6 5.2500 3.0937 0.6118 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9877 0.9296 0.0005 35 1 4.5939 2.9613 -2.0176 36 1 2.9084 3.5163 -1.8813 37 1 4.3980 5.4032 -2.4560 38 1 3.7025 5.6299 -0.8330 39 1 6.0888 6.1369 -0.7425 40 1 6.4827 4.5679 -1.4909 41 1 8.0493 7.7502 2.4705 42 1 7.1055 6.7808 3.4376 43 1 5.0736 7.5023 2.3125 44 1 4.9260 7.2205 0.5611 45 1 6.6776 8.9242 0.1393 46 1 6.8252 9.2061 1.8906 47 1 4.4461 9.8977 1.9806 48 1 4.2977 9.6160 0.2294 49 1 3.0034 11.2700 0.9793 50 1 5.9023 2.4007 0.0803 51 1 5.2021 2.8157 1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594436079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:05 Heat of formation + Delta-G solvation = -104.280432 kcal Electronic energy + Delta-G solvation = -28420.838246 eV Core-core repulsion = 24546.610330 eV Total energy + Delta-G solvation = -3874.227916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.79975 -39.88122 -37.75678 -36.18946 -34.90526 -33.68117 -33.22418 -32.44999 -31.21094 -30.38971 -27.80395 -26.13911 -25.25930 -24.31584 -22.97152 -22.43576 -21.00510 -20.72582 -20.46588 -18.89642 -17.78607 -17.52871 -16.74687 -16.40703 -16.13166 -15.96805 -15.17109 -15.09026 -14.71357 -14.49218 -14.35674 -14.24479 -13.91583 -13.76378 -13.53255 -13.37274 -13.16507 -13.08107 -12.85514 -12.57010 -12.31939 -12.11560 -11.75482 -11.56729 -11.53285 -11.38786 -11.25598 -11.22546 -11.15386 -11.02578 -10.75253 -10.16463 -10.15809 -9.96755 -9.89443 -9.64465 -9.46089 -8.86068 -8.74169 -8.44985 -8.35418 -6.38589 -4.08526 2.32847 2.45438 2.61211 3.06327 3.41885 3.43681 3.62632 4.22510 4.32358 4.45841 4.52177 4.59094 4.63219 4.68921 4.69989 4.72417 4.77042 4.90430 5.07809 5.13021 5.16356 5.20295 5.26283 5.38456 5.39501 5.42047 5.47195 5.55902 5.59661 5.62859 5.72598 5.83019 5.83684 5.87083 5.96124 6.06213 6.13893 6.30879 6.41686 6.57233 6.83751 7.02640 7.12482 7.26924 7.33744 7.46046 7.52173 7.91433 8.10591 8.17171 8.42934 8.85297 9.64311 11.01855 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.002530 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.061437 B =11064.240615 C =12240.223402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.511 3.489 4 O -0.534 6.534 5 N -0.728 5.728 6 C 0.130 3.870 7 H 0.093 0.907 8 C -0.127 4.127 9 C -0.135 4.135 10 C 0.101 3.899 11 N -0.611 5.611 12 C 0.529 3.471 13 O -0.532 6.532 14 C 0.076 3.924 15 H 0.101 0.899 16 N -0.830 5.830 17 C -0.150 4.150 18 C -0.101 4.101 19 C 0.009 3.991 20 C -0.604 4.604 21 H 0.048 0.952 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 1.068 2.932 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.288 1.288 28 C 0.109 3.891 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.352 0.648 42 H 0.349 0.651 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.005 0.995 48 H 0.007 0.993 49 H 0.268 0.732 50 H 0.070 0.930 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -26.312 -5.487 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.297 3.703 4 O -0.410 6.410 5 N -0.380 5.380 6 C 0.024 3.976 7 H 0.111 0.889 8 C -0.166 4.166 9 C -0.174 4.174 10 C -0.022 4.022 11 N -0.346 5.346 12 C 0.318 3.682 13 O -0.407 6.407 14 C -0.039 4.039 15 H 0.119 0.881 16 N -0.362 5.362 17 C -0.190 4.190 18 C -0.139 4.139 19 C -0.028 4.028 20 C -0.642 4.642 21 H 0.067 0.933 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.897 3.103 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.214 1.214 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.175 -24.974 -5.300 25.623 hybrid contribution 0.113 -1.200 0.198 1.221 sum 2.288 -26.174 -5.102 26.764 Atomic orbital electron populations 1.21538 0.92899 1.01631 1.03540 1.21637 0.98830 0.93572 1.04314 1.20846 0.81956 0.92002 0.75468 1.90744 1.55149 1.46541 1.48522 1.45990 1.07344 1.08368 1.76282 1.21319 0.95654 0.83237 0.97367 0.88866 1.21901 1.02302 0.96271 0.96090 1.21844 0.96542 0.96680 1.02337 1.21839 0.97625 0.99566 0.83155 1.47950 1.63094 1.15076 1.08507 1.20759 0.76464 0.87690 0.83312 1.90653 1.55238 1.68889 1.25964 1.21450 0.94986 0.90729 0.96699 0.88119 1.58706 1.36547 1.36927 1.04015 1.22482 0.97241 0.96511 1.02786 1.21515 1.00000 0.92042 1.00296 1.19201 0.93290 0.94298 0.95982 1.22037 0.95024 0.93304 1.53817 0.93337 1.25868 0.94563 1.04371 0.94210 1.70788 1.13171 1.25660 1.45196 0.83552 0.75275 0.75089 0.76427 1.20757 1.21432 1.21431 1.21638 0.92695 0.84005 1.03153 0.92036 0.91887 0.91924 0.88925 0.88875 0.76610 0.91574 0.90982 0.89760 0.90715 0.88568 0.91036 0.83296 0.83710 0.91750 0.91428 0.92873 0.93118 0.97644 0.97522 0.92108 0.91206 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.61 16 2 C -0.14 -0.82 6.42 -27.89 -0.18 -1.00 16 3 C 0.51 4.85 7.80 -10.98 -0.09 4.77 16 4 O -0.53 -7.65 15.64 5.56 0.09 -7.56 16 5 N -0.73 -5.47 5.08 -53.69 -0.27 -5.75 16 6 C 0.13 1.25 2.61 -67.81 -0.18 1.08 16 7 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 8 C -0.13 -1.13 5.46 -26.68 -0.15 -1.27 16 9 C -0.14 -1.27 6.07 -26.83 -0.16 -1.43 16 10 C 0.10 0.94 5.73 -3.93 -0.02 0.92 16 11 N -0.61 -6.94 2.98 -173.03 -0.52 -7.45 16 12 C 0.53 7.66 6.95 -10.99 -0.08 7.59 16 13 O -0.53 -9.36 15.66 5.55 0.09 -9.27 16 14 C 0.08 1.06 2.35 -68.86 -0.16 0.90 16 15 H 0.10 1.24 6.81 -51.93 -0.35 0.89 16 16 N -0.83 -11.69 8.94 -5.65 -0.05 -11.74 16 17 C -0.15 -2.40 4.51 -26.73 -0.12 -2.52 16 18 C -0.10 -1.92 4.92 -26.73 -0.13 -2.05 16 19 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 20 C -0.60 -17.00 9.11 -34.44 -0.31 -17.32 16 21 H 0.05 1.33 7.74 -52.49 -0.41 0.93 16 22 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 23 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 24 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.11 1.05 5.91 -3.71 -0.02 1.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.53 8.10 -51.92 -0.42 0.10 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.70 8.60 -40.82 -0.35 1.35 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.95 4.82 -51.93 -0.25 0.70 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.35 4.64 7.55 -39.29 -0.30 4.35 16 42 H 0.35 5.13 8.58 -39.29 -0.34 4.79 16 43 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 44 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.95 6.87 -51.93 -0.36 0.59 16 47 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 48 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 49 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.10 1.11 7.00 -51.93 -0.36 0.74 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -35.84 401.45 -9.30 -45.14 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.88 Total: 7.33 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.47 Total: -9.51 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.08 Total: -52.31 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.17 Total: -16.83 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.84 -9.30 -45.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594436079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.142 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds