Wall clock time and date at job start Fri Apr 10 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47287 * 2 1 4 4 O 1.21275 * 120.00048 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99573 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.50120 * 34.93610 * 6 5 3 8 8 C 1.53048 * 109.49712 * 274.83924 * 6 5 3 9 9 C 1.53043 * 109.53712 * 178.68558 * 8 6 5 10 10 C 1.52764 * 109.38019 * 61.24090 * 9 8 6 11 11 N 1.46928 * 109.01101 * 305.58623 * 10 9 8 12 12 C 1.34773 * 120.63102 * 233.58704 * 11 10 9 13 13 O 1.21284 * 120.00104 * 179.72158 * 12 11 10 14 14 C 1.50699 * 120.00034 * 359.71700 * 12 11 10 15 15 H 1.08998 * 109.47482 * 320.00457 * 14 12 11 16 16 N 1.46904 * 109.47127 * 200.00143 * 14 12 11 17 17 C 1.53004 * 109.47086 * 80.00138 * 14 12 11 18 18 C 1.52992 * 109.47319 * 184.99758 * 17 14 12 19 19 C 1.53004 * 109.47319 * 180.02562 * 18 17 14 20 20 C 1.50700 * 109.47208 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99770 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 300.00001 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00094 * 24 22 20 28 28 C 1.46926 * 118.73654 * 53.31054 * 11 10 9 29 29 H 1.08997 * 109.47875 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47150 * 300.00334 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.99892 * 1 2 3 32 32 H 1.09005 * 109.46667 * 239.99557 * 2 1 3 33 33 H 1.09003 * 109.46975 * 120.00108 * 2 1 3 34 34 H 0.96998 * 119.99645 * 0.02562 * 5 3 2 35 35 H 1.09006 * 109.45956 * 298.70521 * 8 6 5 36 36 H 1.08994 * 109.45619 * 58.66848 * 8 6 5 37 37 H 1.09000 * 109.49735 * 181.31665 * 9 8 6 38 38 H 1.08997 * 109.50095 * 301.38433 * 9 8 6 39 39 H 1.09001 * 109.50485 * 185.70432 * 10 9 8 40 40 H 1.08998 * 109.43657 * 65.42814 * 10 9 8 41 41 H 1.00907 * 110.99628 * 176.04983 * 16 14 12 42 42 H 1.00896 * 110.99888 * 299.99637 * 16 14 12 43 43 H 1.09009 * 109.46730 * 64.99763 * 17 14 12 44 44 H 1.08998 * 109.47285 * 305.00002 * 17 14 12 45 45 H 1.09000 * 109.47364 * 60.00020 * 18 17 14 46 46 H 1.08998 * 109.47610 * 300.00082 * 18 17 14 47 47 H 1.08994 * 109.47074 * 60.00408 * 19 18 17 48 48 H 1.08998 * 109.47285 * 300.00244 * 19 18 17 49 49 H 0.97005 * 119.99661 * 359.97438 * 23 22 20 50 50 H 1.09000 * 109.58427 * 66.42936 * 28 11 10 51 51 H 1.09000 * 109.58482 * 186.70983 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0481 0.0011 7 1 3.1728 3.6718 0.5894 8 6 3.9018 3.5707 -1.4363 9 6 4.3807 5.0243 -1.4341 10 6 5.7858 5.0942 -0.8387 11 7 5.7762 4.4597 0.4865 12 6 6.2360 5.1204 1.5675 13 8 6.2181 4.5875 2.6568 14 6 6.7726 6.5211 1.4226 15 1 7.3582 6.5930 0.5061 16 7 7.6257 6.8403 2.5751 17 6 5.6067 7.5101 1.3617 18 6 6.1445 8.9164 1.0900 19 6 4.9787 9.9055 1.0297 20 6 5.5084 11.2906 0.7615 21 1 6.5703 11.4495 0.6453 22 6 4.6374 12.3549 0.6646 23 7 3.3444 12.1616 0.8067 24 14 5.2939 14.0718 0.3314 25 1 4.1624 15.0317 0.2730 26 1 6.2229 14.4665 1.4207 27 1 6.0183 14.0818 -0.9649 28 6 5.2500 3.0937 0.6118 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9877 0.9296 0.0005 35 1 4.5939 2.9613 -2.0176 36 1 2.9084 3.5163 -1.8813 37 1 4.3980 5.4032 -2.4560 38 1 3.7025 5.6299 -0.8330 39 1 6.0888 6.1369 -0.7425 40 1 6.4827 4.5679 -1.4909 41 1 8.0493 7.7502 2.4705 42 1 7.1055 6.7808 3.4376 43 1 5.0736 7.5023 2.3125 44 1 4.9260 7.2205 0.5611 45 1 6.6776 8.9242 0.1393 46 1 6.8252 9.2061 1.8906 47 1 4.4461 9.8977 1.9806 48 1 4.2977 9.6160 0.2294 49 1 3.0034 11.2700 0.9793 50 1 5.9023 2.4007 0.0803 51 1 5.2021 2.8157 1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594436079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:04 Heat of formation + Delta-G solvation = -131.160944 kcal Electronic energy + Delta-G solvation = -28422.003873 eV Core-core repulsion = 24546.610330 eV Total energy + Delta-G solvation = -3875.393543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74365 -40.77486 -38.71423 -37.60414 -35.83288 -35.54662 -33.87492 -33.25809 -32.94333 -31.19384 -29.25979 -27.40931 -26.14703 -25.54640 -24.15091 -23.69657 -22.15377 -21.83039 -21.42890 -19.87884 -18.97684 -18.73613 -18.25982 -17.22827 -17.16266 -16.65650 -16.34660 -16.11788 -15.93691 -15.66156 -15.40308 -15.25310 -15.15026 -15.06271 -14.92403 -14.67186 -14.24091 -13.98471 -13.84600 -13.73471 -13.36781 -13.13156 -12.87107 -12.70167 -12.67948 -12.53209 -12.45370 -12.19198 -12.09292 -12.03315 -11.99347 -11.94672 -11.74970 -11.64186 -11.05308 -10.86275 -10.65481 -10.56549 -10.24536 -9.82072 -9.71575 -8.70453 -6.41809 1.41051 1.51905 1.59950 1.60451 1.67900 1.79316 2.30536 2.56234 3.14379 3.29801 3.51659 3.61571 3.72774 3.79499 3.83768 3.84873 3.93996 3.95759 4.13607 4.21726 4.24281 4.25534 4.37769 4.42294 4.46447 4.57563 4.64745 4.70694 4.72289 4.78298 4.83136 4.94675 4.96082 4.98397 5.01688 5.03491 5.08282 5.19227 5.28859 5.33369 5.38754 5.47038 5.49931 5.93566 5.97328 6.16879 6.22455 6.39750 6.51559 6.54816 7.02041 7.25021 7.41609 8.69812 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.002530 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.061437 B =11064.240615 C =12240.223402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.503 3.497 4 O -0.593 6.593 5 N -0.712 5.712 6 C 0.135 3.865 7 H 0.046 0.954 8 C -0.118 4.118 9 C -0.134 4.134 10 C 0.098 3.902 11 N -0.606 5.606 12 C 0.524 3.476 13 O -0.570 6.570 14 C 0.086 3.914 15 H 0.126 0.874 16 N -0.830 5.830 17 C -0.137 4.137 18 C -0.086 4.086 19 C 0.008 3.992 20 C -0.616 4.616 21 H 0.057 0.943 22 C -0.044 4.044 23 N -0.941 5.941 24 Si 1.118 2.882 25 H -0.287 1.287 26 H -0.268 1.268 27 H -0.264 1.264 28 C 0.112 3.888 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.420 0.580 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.357 0.643 42 H 0.344 0.656 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.057 0.943 47 H -0.023 1.023 48 H -0.013 1.013 49 H 0.253 0.747 50 H 0.109 0.891 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -28.039 -7.318 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.291 3.709 4 O -0.473 6.473 5 N -0.365 5.365 6 C 0.029 3.971 7 H 0.065 0.935 8 C -0.157 4.157 9 C -0.173 4.173 10 C -0.023 4.023 11 N -0.339 5.339 12 C 0.312 3.688 13 O -0.449 6.449 14 C -0.029 4.029 15 H 0.144 0.856 16 N -0.362 5.362 17 C -0.177 4.177 18 C -0.124 4.124 19 C -0.029 4.029 20 C -0.654 4.654 21 H 0.076 0.924 22 C -0.241 4.241 23 N -0.579 5.579 24 Si 0.939 3.061 25 H -0.213 1.213 26 H -0.193 1.193 27 H -0.189 1.189 28 C -0.011 4.011 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.173 0.827 42 H 0.157 0.843 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.075 0.925 47 H -0.004 1.004 48 H 0.006 0.994 49 H 0.062 0.938 50 H 0.127 0.873 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.018 -26.764 -7.164 28.157 hybrid contribution -0.809 -0.713 0.763 1.321 sum 4.209 -27.477 -6.402 28.525 Atomic orbital electron populations 1.21556 0.94103 1.02621 1.01550 1.21694 0.97688 0.90992 1.06985 1.21665 0.81935 0.93142 0.74134 1.90727 1.56656 1.48601 1.51303 1.45836 1.07344 1.08132 1.75172 1.21085 0.94764 0.83876 0.97387 0.93534 1.21831 1.02047 0.96359 0.95442 1.21836 0.96083 0.96645 1.02735 1.22045 0.98056 0.99837 0.82378 1.48027 1.61657 1.15614 1.08617 1.20839 0.76597 0.87896 0.83463 1.90637 1.57079 1.69716 1.27459 1.21394 0.94036 0.89817 0.97675 0.85642 1.58729 1.36327 1.37249 1.03877 1.22283 0.98065 0.95608 1.01695 1.21308 0.97674 0.91999 1.01387 1.19172 0.94909 0.95192 0.93650 1.22514 0.95530 0.94602 1.52719 0.92450 1.27515 0.94180 1.08984 0.93412 1.70932 1.14569 1.24740 1.47628 0.82934 0.75085 0.70160 0.77953 1.21283 1.19322 1.18909 1.21732 0.93049 0.83737 1.02589 0.89408 0.94209 0.93707 0.85706 0.86344 0.74169 0.88356 0.92891 0.87969 0.94041 0.89008 0.87368 0.82711 0.84257 0.93837 0.91276 0.91331 0.92470 1.00439 0.99428 0.93781 0.87286 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 71.98 0.66 -1.20 16 2 C -0.13 -1.26 6.42 29.85 0.19 -1.07 16 3 C 0.50 9.43 7.80 87.65 0.68 10.11 16 4 O -0.59 -18.13 15.64 -3.01 -0.05 -18.18 16 5 N -0.71 -9.78 5.08 -442.16 -2.25 -12.03 16 6 C 0.14 2.58 2.61 45.07 0.12 2.69 16 7 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 8 C -0.12 -1.94 5.46 30.62 0.17 -1.78 16 9 C -0.13 -2.39 6.07 30.53 0.19 -2.21 16 10 C 0.10 1.59 5.73 86.22 0.49 2.08 16 11 N -0.61 -12.89 2.98 -819.72 -2.44 -15.33 16 12 C 0.52 14.84 6.95 87.66 0.61 15.45 16 13 O -0.57 -20.21 15.66 -3.04 -0.05 -20.25 16 14 C 0.09 2.28 2.35 44.17 0.10 2.38 16 15 H 0.13 2.74 6.81 -2.39 -0.02 2.72 16 16 N -0.83 -22.58 8.94 -171.79 -1.54 -24.12 16 17 C -0.14 -4.39 4.51 30.59 0.14 -4.25 16 18 C -0.09 -3.24 4.92 30.59 0.15 -3.09 16 19 C 0.01 0.40 4.28 29.85 0.13 0.53 16 20 C -0.62 -34.80 9.11 25.60 0.23 -34.57 16 21 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 22 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 23 N -0.94 -59.62 13.65 21.45 0.29 -59.33 16 24 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 28 C 0.11 1.98 5.91 86.36 0.51 2.49 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.70 8.10 -2.38 -0.02 0.68 16 31 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.42 2.30 8.60 -92.71 -0.80 1.50 16 35 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.60 4.82 -2.39 -0.01 1.59 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.36 8.90 7.55 -89.69 -0.68 8.22 16 42 H 0.34 10.11 8.58 -89.70 -0.77 9.35 16 43 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.07 2.19 6.95 -2.39 -0.02 2.17 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.08 6.87 -2.39 -0.02 2.06 16 47 H -0.02 -1.29 8.01 -2.39 -0.02 -1.31 16 48 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 49 H 0.25 16.32 7.22 -92.70 -0.67 15.65 16 50 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 Total: -1.00 -83.06 401.45 -0.34 -83.40 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -1.20 Total: 28.23 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.84 Total: -14.53 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -5.93 Total: -110.80 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.09 Total: -38.43 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -83.06 -0.34 -83.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594436079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.761 kcal (2) G-P(sol) polarization free energy of solvation -83.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds