Wall clock time and date at job start Fri Apr 10 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46741 * 2 1 4 4 O 1.21279 * 120.00301 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99677 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99998 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.49853 * 324.93687 * 6 5 3 8 8 C 1.53033 * 109.49840 * 85.00335 * 6 5 3 9 9 C 1.53032 * 109.54230 * 181.31809 * 8 6 5 10 10 C 1.53189 * 109.31100 * 298.63494 * 9 8 6 11 11 N 1.46929 * 108.77770 * 54.63406 * 10 9 8 12 12 C 1.34772 * 120.63308 * 126.36803 * 11 10 9 13 13 O 1.21283 * 119.99912 * 179.97438 * 12 11 10 14 14 C 1.50700 * 119.99971 * 0.02562 * 12 11 10 15 15 H 1.09001 * 109.46817 * 319.98961 * 14 12 11 16 16 N 1.46910 * 109.46728 * 199.99907 * 14 12 11 17 17 C 1.52992 * 109.47798 * 79.99728 * 14 12 11 18 18 C 1.52997 * 109.47482 * 185.00026 * 17 14 12 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 14 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 17 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46794 * 90.00022 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00005 * 24 22 20 27 27 H 1.48501 * 109.46982 * 330.00118 * 24 22 20 28 28 C 1.46932 * 118.73406 * 306.64186 * 11 10 9 29 29 H 1.09002 * 109.47303 * 299.99542 * 1 2 3 30 30 H 1.08999 * 109.47183 * 60.00279 * 1 2 3 31 31 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46832 * 239.99767 * 2 1 3 33 33 H 1.08999 * 109.47183 * 119.99721 * 2 1 3 34 34 H 0.97003 * 120.00327 * 0.02562 * 5 3 2 35 35 H 1.09000 * 109.46212 * 61.29445 * 8 6 5 36 36 H 1.09006 * 109.45721 * 301.33975 * 8 6 5 37 37 H 1.09000 * 109.50549 * 178.68117 * 9 8 6 38 38 H 1.09004 * 109.49763 * 58.57982 * 9 8 6 39 39 H 1.08998 * 109.58643 * 294.84389 * 10 9 8 40 40 H 1.09004 * 109.70792 * 174.49112 * 10 9 8 41 41 H 1.00894 * 110.99558 * 176.04306 * 16 14 12 42 42 H 1.00892 * 110.99957 * 299.99600 * 16 14 12 43 43 H 1.09002 * 109.47103 * 64.99779 * 17 14 12 44 44 H 1.08998 * 109.46862 * 305.00591 * 17 14 12 45 45 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 47 47 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 48 48 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 49 49 H 0.97000 * 119.99684 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.58497 * 173.14277 * 28 11 10 51 51 H 1.08996 * 109.58645 * 293.56801 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1743 3.6714 -0.5910 8 6 3.8968 3.5727 1.4368 9 6 4.3755 5.0262 1.4345 10 6 5.7877 5.0935 0.8448 11 7 5.7775 4.4596 -0.4806 12 6 6.2410 5.1189 -1.5608 13 8 6.2276 4.5844 -2.6494 14 6 6.7769 6.5199 -1.4158 15 1 6.1508 7.0782 -0.7198 16 7 6.7673 7.1857 -2.7253 17 6 8.2097 6.4653 -0.8819 18 6 8.7097 7.8867 -0.6168 19 6 10.1428 7.8320 -0.0836 20 6 10.6351 9.2322 0.1781 21 1 9.9905 10.0765 -0.0169 22 6 11.9084 9.4351 0.6665 23 7 12.3382 10.6570 0.8944 24 14 13.0230 7.9747 1.0044 25 1 13.8091 7.6593 -0.2154 26 1 13.9483 8.3053 2.1179 27 1 12.1977 6.7984 1.3793 28 6 5.2468 3.0953 -0.6070 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9878 0.9299 0.0005 35 1 4.5868 2.9640 2.0212 36 1 2.9017 3.5187 1.8786 37 1 4.3893 5.4064 2.4560 38 1 3.6996 5.6309 0.8299 39 1 6.4819 4.5644 1.4977 40 1 6.0970 6.1344 0.7496 41 1 7.0615 8.1474 -2.6440 42 1 7.3410 6.6870 -3.3887 43 1 8.8538 5.9849 -1.6185 44 1 8.2300 5.8939 0.0461 45 1 8.0656 8.3671 0.1197 46 1 8.6894 8.4580 -1.5449 47 1 10.1635 7.2606 0.8444 48 1 10.7866 7.3519 -0.8204 49 1 13.2339 10.7997 1.2383 50 1 5.1967 2.8188 -1.6601 51 1 5.8959 2.3999 -0.0750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594436081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:13 Heat of formation + Delta-G solvation = -96.751825 kcal Electronic energy + Delta-G solvation = -28150.357044 eV Core-core repulsion = 24276.455593 eV Total energy + Delta-G solvation = -3873.901452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82671 -39.91994 -37.80730 -36.17864 -34.94505 -33.40227 -33.27002 -32.48778 -31.50880 -30.43041 -28.24505 -26.44161 -25.36781 -24.53955 -22.99722 -22.31331 -20.88024 -20.74971 -20.24014 -18.98655 -17.74150 -17.58146 -16.78863 -16.47489 -16.12881 -15.99365 -15.18299 -15.03919 -14.76457 -14.64495 -14.44914 -14.38515 -14.20545 -13.77338 -13.60936 -13.37021 -13.15958 -13.03992 -12.63795 -12.61088 -12.37672 -12.17105 -12.08155 -11.78362 -11.61713 -11.54898 -11.35014 -11.28751 -11.19924 -11.05262 -10.82571 -10.23288 -10.09808 -9.95432 -9.83315 -9.55792 -9.50701 -9.26600 -8.87898 -8.60595 -8.55996 -6.10082 -4.08658 2.27019 2.42236 2.60027 3.03205 3.25503 3.33281 3.35570 4.19691 4.28666 4.39352 4.42096 4.53831 4.56304 4.64154 4.65277 4.68988 4.75858 4.87882 5.03894 5.08921 5.14705 5.17263 5.22561 5.24444 5.36983 5.38284 5.46770 5.50536 5.55127 5.61340 5.64011 5.76612 5.78723 5.80588 5.89521 6.01787 6.07759 6.28050 6.37872 6.49889 6.76571 7.02097 7.08004 7.18786 7.26610 7.31840 7.53857 7.72555 7.85182 8.09588 8.47010 8.94459 9.52282 11.03263 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002185 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.600162 B =12812.936052 C =13175.927109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.512 3.488 4 O -0.537 6.537 5 N -0.727 5.727 6 C 0.131 3.869 7 H 0.093 0.907 8 C -0.128 4.128 9 C -0.133 4.133 10 C 0.100 3.900 11 N -0.611 5.611 12 C 0.529 3.471 13 O -0.532 6.532 14 C 0.076 3.924 15 H 0.103 0.897 16 N -0.830 5.830 17 C -0.152 4.152 18 C -0.101 4.101 19 C -0.013 4.013 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.267 1.267 28 C 0.108 3.892 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.353 0.647 42 H 0.349 0.651 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.015 0.985 48 H 0.010 0.990 49 H 0.263 0.737 50 H 0.097 0.903 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 -22.216 1.333 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.299 3.701 4 O -0.413 6.413 5 N -0.379 5.379 6 C 0.025 3.975 7 H 0.111 0.889 8 C -0.167 4.167 9 C -0.172 4.172 10 C -0.023 4.023 11 N -0.346 5.346 12 C 0.318 3.682 13 O -0.408 6.408 14 C -0.039 4.039 15 H 0.121 0.879 16 N -0.362 5.362 17 C -0.191 4.191 18 C -0.139 4.139 19 C -0.050 4.050 20 C -0.561 4.561 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.191 1.191 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.751 -21.858 0.773 30.149 hybrid contribution 2.164 -0.931 0.567 2.423 sum -18.587 -22.789 1.341 29.438 Atomic orbital electron populations 1.21533 0.92912 1.01650 1.03455 1.21642 0.98810 0.93587 1.04392 1.20832 0.81933 0.91986 0.75367 1.90724 1.55184 1.46574 1.48784 1.46002 1.07364 1.08429 1.76138 1.21213 0.95706 0.83210 0.97321 0.88942 1.21905 1.02267 0.96358 0.96159 1.21908 0.96467 0.96664 1.02173 1.21954 0.97374 0.99735 0.83230 1.47947 1.62858 1.15255 1.08549 1.20767 0.76432 0.87887 0.83164 1.90654 1.55392 1.68791 1.25915 1.21460 0.97192 0.91731 0.93529 0.87944 1.58679 1.63031 1.06965 1.07573 1.22479 0.94295 1.00748 1.01610 1.21483 0.99033 0.92640 1.00724 1.19554 0.91850 0.97950 0.95647 1.21135 0.99675 0.91732 1.43514 0.91010 1.25042 0.97945 0.95544 0.94968 1.69913 1.18380 1.20179 1.45616 0.86779 0.80755 0.83543 0.78179 1.20327 1.21354 1.19123 1.21554 0.92694 0.84164 1.03189 0.91966 0.91916 0.92028 0.88836 0.88884 0.76527 0.91475 0.91051 0.89850 0.90955 0.90753 0.88528 0.83137 0.83729 0.91689 0.91472 0.92375 0.92689 0.96669 0.97195 0.92703 0.88447 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.14 -0.72 6.42 -27.88 -0.18 -0.90 16 3 C 0.51 4.38 7.79 -10.99 -0.09 4.29 16 4 O -0.54 -6.96 15.65 5.56 0.09 -6.88 16 5 N -0.73 -4.94 5.08 -53.91 -0.27 -5.21 16 6 C 0.13 1.14 2.59 -68.03 -0.18 0.96 16 7 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 8 C -0.13 -1.00 5.46 -26.70 -0.15 -1.15 16 9 C -0.13 -1.04 6.08 -26.62 -0.16 -1.20 16 10 C 0.10 0.87 5.59 -3.71 -0.02 0.85 16 11 N -0.61 -6.59 2.98 -173.03 -0.52 -7.10 16 12 C 0.53 7.34 6.95 -10.99 -0.08 7.26 16 13 O -0.53 -9.07 15.66 5.55 0.09 -8.98 16 14 C 0.08 1.00 2.35 -68.86 -0.16 0.84 16 15 H 0.10 1.22 6.54 -51.93 -0.34 0.88 16 16 N -0.83 -11.33 8.94 -5.65 -0.05 -11.38 16 17 C -0.15 -2.19 4.61 -26.74 -0.12 -2.31 16 18 C -0.10 -1.79 4.92 -26.73 -0.13 -1.92 16 19 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 20 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 21 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 23 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 24 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 28 C 0.11 0.99 5.88 -3.93 -0.02 0.96 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.40 1.53 8.60 -40.82 -0.35 1.18 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.86 5.18 -51.93 -0.27 0.59 16 41 H 0.35 4.52 7.55 -39.29 -0.30 4.22 16 42 H 0.35 4.89 8.58 -39.30 -0.34 4.55 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.91 7.20 -51.93 -0.37 0.54 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.96 6.87 -51.93 -0.36 0.61 16 47 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 48 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.10 1.06 7.01 -51.93 -0.36 0.70 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -35.07 399.44 -8.95 -44.03 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.93 Total: 5.67 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.49 Total: -6.20 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.07 Total: -50.34 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.17 Total: -15.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.07 -8.95 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594436081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.726 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds