Wall clock time and date at job start Fri Apr 10 2020 18:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 N 1.46496 * 109.47425 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00266 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00135 * 0.27234 * 5 4 3 7 7 C 1.50706 * 119.99766 * 179.97438 * 5 4 3 8 8 N 1.46500 * 109.46949 * 179.97438 * 7 5 4 9 9 C 1.46494 * 120.00020 * 89.99910 * 8 7 5 10 10 C 1.34777 * 120.00124 * 270.00237 * 8 7 5 11 11 O 1.21284 * 120.00042 * 0.02562 * 10 8 7 12 12 C 1.50699 * 120.00130 * 179.97438 * 10 8 7 13 13 N 1.46903 * 109.47201 * 180.02562 * 12 10 8 14 14 C 1.46841 * 111.00114 * 66.04485 * 13 12 10 15 15 C 1.53042 * 109.52374 * 174.16340 * 14 13 12 16 16 C 1.53113 * 109.27690 * 59.18187 * 15 14 13 17 17 C 1.53124 * 109.16047 * 302.34287 * 16 15 14 18 18 H 1.09000 * 109.50070 * 297.71691 * 17 16 15 19 19 C 1.50700 * 109.50266 * 177.60211 * 17 16 15 20 20 H 1.08002 * 119.99607 * 240.00171 * 19 17 16 21 21 C 1.37871 * 120.00509 * 59.99809 * 19 17 16 22 22 N 1.31515 * 119.99985 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00208 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47043 * 90.00225 * 23 21 19 25 25 H 1.48496 * 109.46808 * 210.00344 * 23 21 19 26 26 H 1.48503 * 109.46890 * 330.00261 * 23 21 19 27 27 C 1.46853 * 110.99913 * 301.83628 * 13 12 10 28 28 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 30 30 H 1.09004 * 109.47878 * 59.99710 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00901 * 2 1 3 32 32 H 1.08987 * 109.47609 * 120.00084 * 2 1 3 33 33 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 34 34 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 35 35 H 0.96999 * 119.99691 * 359.97438 * 4 3 2 36 36 H 1.09000 * 109.47161 * 299.99737 * 7 5 4 37 37 H 1.09001 * 109.46740 * 59.99879 * 7 5 4 38 38 H 1.09001 * 109.47412 * 89.99916 * 9 8 7 39 39 H 1.09000 * 109.47567 * 210.00198 * 9 8 7 40 40 H 1.09002 * 109.47279 * 329.99646 * 9 8 7 41 41 H 1.09005 * 109.47151 * 299.99768 * 12 10 8 42 42 H 1.08993 * 109.47232 * 59.99939 * 12 10 8 43 43 H 1.09004 * 109.46322 * 294.17906 * 14 13 12 44 44 H 1.08997 * 109.46417 * 54.14692 * 14 13 12 45 45 H 1.09000 * 109.50165 * 179.12044 * 15 14 13 46 46 H 1.08995 * 109.50224 * 299.23566 * 15 14 13 47 47 H 1.08989 * 109.52817 * 62.25064 * 16 15 14 48 48 H 1.09002 * 109.51978 * 182.44170 * 16 15 14 49 49 H 0.97001 * 120.00465 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.46117 * 305.85416 * 27 13 12 51 51 H 1.09006 * 109.45976 * 65.82148 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1787 2.6099 -0.0002 6 8 3.5724 3.6601 0.0057 7 6 5.6858 2.6099 -0.0003 8 7 6.1741 3.9911 -0.0004 9 6 6.4183 4.6818 1.2682 10 6 6.3986 4.6264 -1.1676 11 8 6.1960 4.0548 -2.2179 12 6 6.9004 6.0474 -1.1677 13 7 7.0630 6.5092 -2.5528 14 6 5.7652 6.5969 -3.2341 15 6 5.9561 7.2167 -4.6203 16 6 6.9225 6.3503 -5.4327 17 6 8.2499 6.2352 -4.6781 18 1 8.6969 7.2240 -4.5752 19 6 9.1868 5.3358 -5.4424 20 1 9.5641 4.4339 -4.9833 21 6 9.5623 5.6640 -6.7278 22 7 9.1033 6.7624 -7.2867 23 14 10.7231 4.5487 -7.6754 24 1 9.9356 3.5401 -8.4286 25 1 11.5246 5.3612 -8.6255 26 1 11.6320 3.8583 -6.7253 27 6 7.9925 5.6439 -3.2903 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8898 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9899 0.6026 -0.0006 36 1 6.0492 2.0957 0.8895 37 1 6.0490 2.0963 -0.8905 38 1 7.4477 4.5106 1.5829 39 1 6.2512 5.7510 1.1379 40 1 5.7374 4.2978 2.0279 41 1 6.1820 6.6864 -0.6541 42 1 7.8604 6.0938 -0.6538 43 1 5.3414 5.5980 -3.3381 44 1 5.0887 7.2190 -2.6482 45 1 4.9949 7.2673 -5.1318 46 1 6.3670 8.2209 -4.5165 47 1 6.4943 5.3575 -5.5699 48 1 7.0952 6.8112 -6.4052 49 1 9.3677 6.9937 -8.1909 50 1 8.9338 5.5739 -2.7451 51 1 7.5582 4.6495 -3.3940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:22 Heat of formation + Delta-G solvation = -67.828058 kcal Electronic energy + Delta-G solvation = -28885.382107 eV Core-core repulsion = 25012.734884 eV Total energy + Delta-G solvation = -3872.647223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52209 -39.44894 -37.41040 -36.10036 -35.24239 -33.54777 -32.98889 -31.68969 -29.72521 -29.55248 -27.10715 -26.67770 -25.11245 -24.79217 -22.22306 -21.96260 -21.27888 -20.77007 -19.24157 -18.51068 -17.46175 -17.03365 -16.66874 -16.24199 -16.04933 -15.60414 -15.29749 -14.79739 -14.68720 -14.24292 -14.12048 -13.82163 -13.60604 -13.32678 -13.15826 -12.96639 -12.94508 -12.60465 -12.47200 -12.27435 -12.05244 -11.97685 -11.86070 -11.57530 -11.53466 -11.31187 -11.20355 -10.84385 -10.55189 -10.48288 -10.24153 -10.07308 -9.86639 -9.63406 -9.34333 -9.30264 -8.87974 -8.68213 -8.55231 -8.17416 -7.37248 -5.85095 -3.90063 2.46038 2.56781 2.88868 3.21799 3.38312 3.44231 3.47585 4.39601 4.47931 4.53074 4.57448 4.60267 4.72409 4.81205 4.94284 4.99688 5.18858 5.20977 5.23854 5.31884 5.36527 5.44607 5.46736 5.56231 5.58596 5.66606 5.69123 5.77802 5.89756 6.11292 6.15048 6.26096 6.30050 6.53963 6.70475 6.75532 6.93760 7.02381 7.15254 7.21610 7.34123 7.40377 7.54902 7.78580 7.87477 7.92249 8.02443 8.25129 8.31070 8.38470 8.64293 9.13801 9.72916 11.21014 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002798 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.895317 B =10003.648754 C =10603.485654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.735 5.735 5 C 0.497 3.503 6 O -0.528 6.528 7 C 0.095 3.905 8 N -0.608 5.608 9 C 0.084 3.916 10 C 0.486 3.514 11 O -0.517 6.517 12 C 0.040 3.960 13 N -0.513 5.513 14 C 0.052 3.948 15 C -0.114 4.114 16 C -0.108 4.108 17 C 0.057 3.943 18 H 0.029 0.971 19 C -0.507 4.507 20 H 0.052 0.948 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.047 3.953 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.088 0.912 49 H 0.258 0.742 50 H 0.049 0.951 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 -11.041 20.759 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.389 5.389 5 C 0.281 3.719 6 O -0.403 6.403 7 C -0.032 4.032 8 N -0.344 5.344 9 C -0.059 4.059 10 C 0.274 3.726 11 O -0.392 6.392 12 C -0.092 4.092 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.152 4.152 16 C -0.146 4.146 17 C 0.038 3.962 18 H 0.047 0.953 19 C -0.546 4.546 20 H 0.070 0.930 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.717 3.283 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.080 4.080 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.319 -9.937 20.000 25.505 hybrid contribution 0.374 -1.919 -0.394 1.994 sum -11.945 -11.856 19.606 25.839 Atomic orbital electron populations 1.21682 0.94520 1.02178 1.02417 1.21735 0.97064 0.95807 1.02744 1.21383 0.79609 0.97110 1.02423 1.46012 1.07377 1.08740 1.76760 1.21388 0.91001 0.83742 0.75732 1.90707 1.70159 1.31299 1.48109 1.21221 0.90403 0.86203 1.05381 1.47810 1.66372 1.12838 1.07342 1.21768 1.00795 0.98329 0.85019 1.22737 0.76764 0.90357 0.82742 1.90677 1.50559 1.67700 1.30237 1.22408 1.02100 0.89496 0.95221 1.62517 1.11759 1.49522 0.99767 1.22174 0.89732 1.00007 0.95674 1.21640 0.99126 1.00184 0.94271 1.21615 0.95027 0.96987 1.01018 1.18628 0.92854 0.96415 0.88268 0.95253 1.21152 1.26885 1.07765 0.98828 0.92990 1.24933 0.96299 0.95155 0.97590 1.69904 1.44619 1.23939 1.14449 0.86646 0.81072 0.80694 0.79857 1.20864 1.21331 1.20059 1.22644 0.92875 0.95987 0.96447 0.92142 0.92389 0.92230 0.91170 0.91350 0.91641 0.91516 0.76610 0.87816 0.86879 0.92334 0.90525 0.91493 0.88540 0.88214 0.93267 0.93169 0.93723 0.92437 0.95044 0.89354 0.93215 0.93274 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.14 -0.76 6.05 -26.73 -0.16 -0.92 16 3 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 4 N -0.74 -6.41 5.56 -60.29 -0.33 -6.74 16 5 C 0.50 6.04 7.90 -10.98 -0.09 5.95 16 6 O -0.53 -8.75 16.43 5.56 0.09 -8.65 16 7 C 0.10 0.99 5.89 -5.19 -0.03 0.96 16 8 N -0.61 -7.57 2.36 -182.95 -0.43 -8.01 16 9 C 0.08 0.71 10.24 59.84 0.61 1.33 16 10 C 0.49 8.02 7.09 -10.99 -0.08 7.94 16 11 O -0.52 -10.70 11.20 5.55 0.06 -10.63 16 12 C 0.04 0.62 4.41 -4.97 -0.02 0.60 16 13 N -0.51 -10.35 4.86 -236.11 -1.15 -11.49 16 14 C 0.05 1.06 5.09 -3.83 -0.02 1.04 16 15 C -0.11 -2.51 6.09 -26.65 -0.16 -2.67 16 16 C -0.11 -2.82 5.02 -26.61 -0.13 -2.95 16 17 C 0.06 1.54 2.26 -91.69 -0.21 1.33 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.51 -14.72 8.56 -34.44 -0.29 -15.02 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -26.48 11.35 55.43 0.63 -25.85 16 23 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.05 1.09 4.20 -3.83 -0.02 1.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.31 8.14 -51.94 -0.42 -0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 36 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.11 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.63 6.44 -51.93 -0.33 0.29 16 40 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.10 1.30 7.32 -51.93 -0.38 0.92 16 42 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 43 H 0.05 1.11 6.00 -51.93 -0.31 0.80 16 44 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.03 0.84 8.14 -51.94 -0.42 0.42 16 48 H 0.09 2.51 6.15 -51.93 -0.32 2.19 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 51 H 0.06 1.54 5.36 -51.93 -0.28 1.26 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -36.63 397.68 -9.58 -46.21 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -9.07 Total: 1.16 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.35 Total: 0.91 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -1.28 Total: -52.10 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.15 Total: -19.29 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.63 -9.58 -46.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.620 kcal (2) G-P(sol) polarization free energy of solvation -36.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds