Wall clock time and date at job start Fri Apr 10 2020 18:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 N 1.46496 * 109.47425 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00266 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00135 * 0.27234 * 5 4 3 7 7 C 1.50706 * 119.99766 * 179.97438 * 5 4 3 8 8 N 1.46500 * 109.46949 * 179.97438 * 7 5 4 9 9 C 1.46494 * 120.00020 * 89.99910 * 8 7 5 10 10 C 1.34777 * 120.00124 * 270.00237 * 8 7 5 11 11 O 1.21284 * 120.00042 * 0.02562 * 10 8 7 12 12 C 1.50699 * 120.00130 * 179.97438 * 10 8 7 13 13 N 1.46903 * 109.47201 * 180.02562 * 12 10 8 14 14 C 1.46841 * 111.00114 * 66.04485 * 13 12 10 15 15 C 1.53042 * 109.52374 * 174.16340 * 14 13 12 16 16 C 1.53113 * 109.27690 * 59.18187 * 15 14 13 17 17 C 1.53124 * 109.16047 * 302.34287 * 16 15 14 18 18 H 1.09000 * 109.50070 * 297.71691 * 17 16 15 19 19 C 1.50700 * 109.50266 * 177.60211 * 17 16 15 20 20 H 1.08002 * 119.99607 * 240.00171 * 19 17 16 21 21 C 1.37871 * 120.00509 * 59.99809 * 19 17 16 22 22 N 1.31515 * 119.99985 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00208 * 180.02562 * 21 19 17 24 24 H 1.48490 * 109.47043 * 90.00225 * 23 21 19 25 25 H 1.48496 * 109.46808 * 210.00344 * 23 21 19 26 26 H 1.48503 * 109.46890 * 330.00261 * 23 21 19 27 27 C 1.46853 * 110.99913 * 301.83628 * 13 12 10 28 28 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 30 30 H 1.09004 * 109.47878 * 59.99710 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00901 * 2 1 3 32 32 H 1.08987 * 109.47609 * 120.00084 * 2 1 3 33 33 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 34 34 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 35 35 H 0.96999 * 119.99691 * 359.97438 * 4 3 2 36 36 H 1.09000 * 109.47161 * 299.99737 * 7 5 4 37 37 H 1.09001 * 109.46740 * 59.99879 * 7 5 4 38 38 H 1.09001 * 109.47412 * 89.99916 * 9 8 7 39 39 H 1.09000 * 109.47567 * 210.00198 * 9 8 7 40 40 H 1.09002 * 109.47279 * 329.99646 * 9 8 7 41 41 H 1.09005 * 109.47151 * 299.99768 * 12 10 8 42 42 H 1.08993 * 109.47232 * 59.99939 * 12 10 8 43 43 H 1.09004 * 109.46322 * 294.17906 * 14 13 12 44 44 H 1.08997 * 109.46417 * 54.14692 * 14 13 12 45 45 H 1.09000 * 109.50165 * 179.12044 * 15 14 13 46 46 H 1.08995 * 109.50224 * 299.23566 * 15 14 13 47 47 H 1.08989 * 109.52817 * 62.25064 * 16 15 14 48 48 H 1.09002 * 109.51978 * 182.44170 * 16 15 14 49 49 H 0.97001 * 120.00465 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.46117 * 305.85416 * 27 13 12 51 51 H 1.09006 * 109.45976 * 65.82148 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1787 2.6099 -0.0002 6 8 3.5724 3.6601 0.0057 7 6 5.6858 2.6099 -0.0003 8 7 6.1741 3.9911 -0.0004 9 6 6.4183 4.6818 1.2682 10 6 6.3986 4.6264 -1.1676 11 8 6.1960 4.0548 -2.2179 12 6 6.9004 6.0474 -1.1677 13 7 7.0630 6.5092 -2.5528 14 6 5.7652 6.5969 -3.2341 15 6 5.9561 7.2167 -4.6203 16 6 6.9225 6.3503 -5.4327 17 6 8.2499 6.2352 -4.6781 18 1 8.6969 7.2240 -4.5752 19 6 9.1868 5.3358 -5.4424 20 1 9.5641 4.4339 -4.9833 21 6 9.5623 5.6640 -6.7278 22 7 9.1033 6.7624 -7.2867 23 14 10.7231 4.5487 -7.6754 24 1 9.9356 3.5401 -8.4286 25 1 11.5246 5.3612 -8.6255 26 1 11.6320 3.8583 -6.7253 27 6 7.9925 5.6439 -3.2903 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8898 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.9899 0.6026 -0.0006 36 1 6.0492 2.0957 0.8895 37 1 6.0490 2.0963 -0.8905 38 1 7.4477 4.5106 1.5829 39 1 6.2512 5.7510 1.1379 40 1 5.7374 4.2978 2.0279 41 1 6.1820 6.6864 -0.6541 42 1 7.8604 6.0938 -0.6538 43 1 5.3414 5.5980 -3.3381 44 1 5.0887 7.2190 -2.6482 45 1 4.9949 7.2673 -5.1318 46 1 6.3670 8.2209 -4.5165 47 1 6.4943 5.3575 -5.5699 48 1 7.0952 6.8112 -6.4052 49 1 9.3677 6.9937 -8.1909 50 1 8.9338 5.5739 -2.7451 51 1 7.5582 4.6495 -3.3940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595612216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:22 Heat of formation + Delta-G solvation = -94.812841 kcal Electronic energy + Delta-G solvation = -28886.552255 eV Core-core repulsion = 25012.734884 eV Total energy + Delta-G solvation = -3873.817371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67324 -40.57666 -38.95549 -36.94745 -36.31788 -35.47240 -33.72564 -33.49923 -31.66422 -30.55101 -28.30023 -27.42832 -26.92479 -26.09275 -23.79065 -23.14987 -22.62760 -21.78066 -20.60978 -20.11016 -18.44966 -18.32437 -18.16142 -17.60202 -16.85961 -16.78493 -16.63794 -16.27223 -15.78547 -15.72896 -15.62530 -15.01606 -14.88117 -14.81401 -14.29604 -14.00196 -13.85737 -13.73713 -13.67136 -13.59202 -13.36985 -13.11039 -12.97135 -12.91640 -12.83868 -12.77218 -12.50787 -12.29537 -12.08671 -11.79930 -11.78791 -11.65568 -11.39968 -11.37854 -11.20095 -10.86958 -10.66472 -10.37158 -10.17433 -9.68299 -8.98581 -8.06641 -6.20432 1.39549 1.40821 1.47505 1.51304 1.56960 1.88964 2.37290 2.43235 3.07705 3.19439 3.65529 3.77735 3.90326 4.01704 4.11788 4.18022 4.21234 4.27140 4.30717 4.34568 4.38890 4.51052 4.54065 4.61143 4.70083 4.75766 4.77729 4.78460 4.82538 4.93689 4.95212 5.06286 5.10394 5.15836 5.19851 5.22761 5.29048 5.38782 5.42367 5.46086 5.51403 5.63722 5.94749 6.09388 6.13821 6.18828 6.37288 6.47143 6.48069 6.90897 7.14758 7.21610 7.46357 8.98419 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.002798 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.895317 B =10003.648754 C =10603.485654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.118 3.882 4 N -0.720 5.720 5 C 0.492 3.508 6 O -0.579 6.579 7 C 0.094 3.906 8 N -0.603 5.603 9 C 0.075 3.925 10 C 0.479 3.521 11 O -0.570 6.570 12 C 0.039 3.961 13 N -0.520 5.520 14 C 0.061 3.939 15 C -0.108 4.108 16 C -0.100 4.100 17 C 0.055 3.945 18 H -0.002 1.002 19 C -0.533 4.533 20 H 0.047 0.953 21 C 0.011 3.989 22 N -0.916 5.916 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.279 1.279 26 H -0.267 1.267 27 C 0.066 3.934 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.417 0.583 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.027 0.973 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.009 0.991 48 H 0.059 0.941 49 H 0.260 0.740 50 H 0.052 0.948 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 -12.368 23.201 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.006 4.006 4 N -0.373 5.373 5 C 0.278 3.722 6 O -0.458 6.458 7 C -0.033 4.033 8 N -0.336 5.336 9 C -0.066 4.066 10 C 0.268 3.732 11 O -0.449 6.449 12 C -0.093 4.093 13 N -0.242 5.242 14 C -0.067 4.067 15 C -0.146 4.146 16 C -0.138 4.138 17 C 0.036 3.964 18 H 0.016 0.984 19 C -0.571 4.571 20 H 0.065 0.935 21 C -0.187 4.187 22 N -0.556 5.556 23 Si 0.781 3.219 24 H -0.204 1.204 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.061 4.061 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.254 0.746 36 H 0.171 0.829 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.028 0.972 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.093 -11.316 22.516 27.951 hybrid contribution 0.248 -1.537 -1.061 1.884 sum -11.845 -12.852 21.456 27.674 Atomic orbital electron populations 1.21703 0.94279 1.02878 1.02078 1.21685 0.97171 0.93699 1.03785 1.21415 0.79365 0.98905 1.00937 1.45930 1.07646 1.08769 1.74991 1.21734 0.91758 0.83762 0.74994 1.90682 1.71178 1.33120 1.50809 1.21456 0.89234 0.85456 1.07160 1.47812 1.64668 1.13598 1.07516 1.22082 1.02805 0.98377 0.83340 1.22709 0.76660 0.90663 0.83189 1.90662 1.53174 1.68751 1.32337 1.22562 1.04398 0.89776 0.92516 1.62405 1.11005 1.49225 1.01542 1.22058 0.90386 0.99101 0.95172 1.21557 0.98776 0.99210 0.95047 1.21414 0.95818 0.96236 1.00337 1.18561 0.92628 0.94572 0.90609 0.98364 1.21479 1.27853 1.08072 0.99740 0.93507 1.25756 0.97875 0.96622 0.98456 1.70041 1.45454 1.25330 1.14753 0.85590 0.79009 0.78787 0.78469 1.20434 1.20449 1.19130 1.22229 0.93713 0.95266 0.94923 0.90878 0.92209 0.93186 0.90851 0.89472 0.92113 0.94123 0.74555 0.82886 0.88003 0.89705 0.90093 0.90001 0.85837 0.85591 0.95457 0.90233 0.91960 0.92412 0.97179 0.92236 0.93053 0.92998 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.20 6.05 30.59 0.19 -1.01 16 3 C 0.12 1.93 5.67 86.38 0.49 2.42 16 4 N -0.72 -11.64 5.56 -463.06 -2.57 -14.21 16 5 C 0.49 11.48 7.90 87.66 0.69 12.17 16 6 O -0.58 -19.10 16.43 -3.01 -0.05 -19.15 16 7 C 0.09 1.77 5.89 85.63 0.50 2.27 16 8 N -0.60 -13.76 2.36 -851.13 -2.01 -15.77 16 9 C 0.08 1.02 10.24 127.77 1.31 2.33 16 10 C 0.48 15.37 7.09 87.66 0.62 15.99 16 11 O -0.57 -24.02 11.20 -3.04 -0.03 -24.05 16 12 C 0.04 1.13 4.41 85.56 0.38 1.51 16 13 N -0.52 -20.67 4.86 -900.91 -4.38 -25.05 16 14 C 0.06 2.47 5.09 86.33 0.44 2.91 16 15 C -0.11 -4.81 6.09 30.65 0.19 -4.62 16 16 C -0.10 -5.41 5.02 30.67 0.15 -5.26 16 17 C 0.06 3.08 2.26 -11.49 -0.03 3.05 16 18 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 19 C -0.53 -31.89 8.56 25.60 0.22 -31.67 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.66 5.30 84.65 0.45 1.11 16 22 N -0.92 -56.01 11.35 21.45 0.24 -55.77 16 23 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.07 3.14 4.20 86.32 0.36 3.50 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.42 3.73 8.47 -92.71 -0.79 2.95 16 36 H 0.15 1.31 8.07 -2.39 -0.02 1.29 16 37 H 0.10 2.23 7.42 -2.39 -0.02 2.21 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.05 6.44 -2.39 -0.02 1.03 16 40 H 0.08 0.91 8.07 -2.39 -0.02 0.89 16 41 H 0.12 2.96 7.32 -2.38 -0.02 2.94 16 42 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 43 H 0.03 1.26 6.00 -2.38 -0.01 1.24 16 44 H 0.08 2.78 8.06 -2.39 -0.02 2.76 16 45 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 46 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 3.54 6.15 -2.39 -0.01 3.52 16 49 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 50 H 0.05 2.38 8.12 -2.39 -0.02 2.36 16 51 H 0.04 2.27 5.36 -2.38 -0.01 2.25 16 Total: -1.00 -84.13 397.68 0.02 -84.11 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.12 Total: 17.83 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.68 Total: 4.00 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -8.72 Total: -110.79 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.08 Total: -43.20 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -84.13 0.02 -84.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.706 kcal (2) G-P(sol) polarization free energy of solvation -84.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds