Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53003 * 109.46673 * 240.00075 * 2 1 3 5 5 N 1.46499 * 109.47216 * 120.00346 * 2 1 3 6 6 C 1.34784 * 119.99971 * 59.99659 * 5 2 1 7 7 O 1.21274 * 119.99897 * 359.72827 * 6 5 2 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 2 9 9 N 1.46506 * 109.46874 * 180.02562 * 8 6 5 10 10 C 1.34773 * 119.99778 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00561 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.46893 * 109.47267 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00054 * 66.04584 * 13 12 10 15 15 C 1.53035 * 109.52412 * 174.15871 * 14 13 12 16 16 C 1.53121 * 109.27906 * 59.18383 * 15 14 13 17 17 C 1.53116 * 109.15826 * 302.34451 * 16 15 14 18 18 H 1.09005 * 109.50796 * 297.71352 * 17 16 15 19 19 C 1.50702 * 109.50319 * 177.59338 * 17 16 15 20 20 H 1.08003 * 119.99672 * 239.99914 * 19 17 16 21 21 C 1.37868 * 119.99887 * 60.00165 * 19 17 16 22 22 N 1.31516 * 120.00243 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 120.00129 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46806 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46824 * 119.99890 * 23 21 19 26 26 H 1.48496 * 109.47426 * 240.00061 * 23 21 19 27 27 C 1.46850 * 111.00233 * 301.83790 * 13 12 10 28 28 H 1.09002 * 109.46768 * 299.99531 * 1 2 3 29 29 H 1.08996 * 109.47401 * 59.99414 * 1 2 3 30 30 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47124 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47101 * 300.00609 * 3 2 1 33 33 H 1.09004 * 109.47330 * 60.00411 * 3 2 1 34 34 H 1.08998 * 109.47453 * 300.00086 * 4 2 1 35 35 H 1.09005 * 109.47378 * 60.00161 * 4 2 1 36 36 H 1.09000 * 109.47321 * 179.97438 * 4 2 1 37 37 H 0.96999 * 119.99984 * 239.99506 * 5 2 1 38 38 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 39 39 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 40 40 H 0.97000 * 119.99666 * 359.97438 * 9 8 6 41 41 H 1.08997 * 109.47359 * 300.00522 * 12 10 9 42 42 H 1.09002 * 109.46662 * 59.99891 * 12 10 9 43 43 H 1.09000 * 109.46844 * 294.17800 * 14 13 12 44 44 H 1.09001 * 109.46019 * 54.15000 * 14 13 12 45 45 H 1.08999 * 109.50590 * 179.12559 * 15 14 13 46 46 H 1.09000 * 109.50383 * 299.24231 * 15 14 13 47 47 H 1.08994 * 109.51928 * 62.24713 * 16 15 14 48 48 H 1.09000 * 109.52380 * 182.37647 * 16 15 14 49 49 H 0.96998 * 120.00189 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.46012 * 305.86047 * 27 13 12 51 51 H 1.09000 * 109.45720 * 65.82128 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.6927 -1.9811 1.4094 7 8 0.9914 -2.5689 0.6136 8 6 2.1956 -2.6916 2.6395 9 7 1.7076 -4.0730 2.6392 10 6 2.0332 -4.9029 3.6500 11 8 2.7306 -4.5064 4.5595 12 6 1.5308 -6.3237 3.6500 13 7 2.0210 -7.0165 4.8490 14 6 1.4366 -6.4392 6.0662 15 6 1.8533 -7.2741 7.2792 16 6 3.3810 -7.2892 7.3818 17 6 3.9664 -7.8497 6.0828 18 1 3.6326 -8.8785 5.9473 19 6 5.4713 -7.8132 6.1521 20 1 6.0316 -7.2425 5.4262 21 6 6.1329 -8.5082 7.1421 22 7 5.4505 -9.2027 8.0262 23 14 7.9984 -8.4635 7.2277 24 1 8.5242 -7.6168 6.1269 25 1 8.4205 -7.8956 8.5333 26 1 8.5334 -9.8420 7.0913 27 6 3.4884 -6.9982 4.9044 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.5761 -0.2193 1.8346 38 1 3.2856 -2.6917 2.6390 39 1 1.8327 -2.1779 3.5297 40 1 1.1495 -4.3901 1.9119 41 1 0.4408 -6.3237 3.6500 42 1 1.8940 -6.8375 2.7599 43 1 1.7920 -5.4162 6.1900 44 1 0.3498 -6.4383 5.9821 45 1 1.4321 -6.8364 8.1843 46 1 1.4863 -8.2938 7.1626 47 1 3.7456 -6.2739 7.5374 48 1 3.6836 -7.9173 8.2197 49 1 5.9159 -9.6914 8.7230 50 1 3.8919 -7.4032 3.9763 51 1 3.8341 -5.9726 5.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -74.291474 kcal Electronic energy + Delta-G solvation = -28466.531333 eV Core-core repulsion = 24593.603836 eV Total energy + Delta-G solvation = -3872.927498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74105 -39.85228 -37.50895 -36.85329 -34.40285 -33.53977 -32.62150 -31.66924 -29.72203 -28.61804 -27.84959 -27.64545 -26.02439 -24.82231 -22.33283 -21.51221 -21.22095 -20.44475 -19.97020 -18.72692 -17.78188 -16.67311 -16.27718 -16.26492 -16.09554 -15.65791 -15.04433 -14.74415 -14.54540 -14.42133 -14.08793 -13.99395 -13.91472 -13.38172 -13.19964 -12.98386 -12.91001 -12.55848 -12.47927 -12.27298 -12.07662 -11.97935 -11.93525 -11.59622 -11.56782 -11.47713 -11.23593 -10.87373 -10.55408 -10.48185 -10.17132 -10.03462 -9.92134 -9.70246 -9.54535 -9.35128 -9.05433 -8.91118 -8.56986 -8.19653 -7.41826 -5.86960 -3.91832 2.19911 2.52580 2.76374 3.34514 3.36273 3.43741 3.48288 4.15228 4.45214 4.45507 4.46578 4.60542 4.62907 5.00455 5.06398 5.08585 5.17775 5.23665 5.28738 5.34194 5.40631 5.42056 5.42979 5.53681 5.56587 5.65565 5.82850 5.88294 5.96041 6.06100 6.14264 6.20190 6.29351 6.48864 6.66215 6.72174 6.89546 6.99260 7.06717 7.19610 7.35627 7.42429 7.55674 7.74457 7.77247 7.85873 7.90446 8.22815 8.29218 8.37983 8.62249 9.12310 9.71430 11.19177 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002386 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.799351 B =11731.311960 C =12638.891664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 C -0.156 4.156 4 C -0.165 4.165 5 N -0.722 5.722 6 C 0.515 3.485 7 O -0.532 6.532 8 C 0.098 3.902 9 N -0.726 5.726 10 C 0.479 3.521 11 O -0.521 6.521 12 C 0.038 3.962 13 N -0.513 5.513 14 C 0.050 3.950 15 C -0.115 4.115 16 C -0.108 4.108 17 C 0.056 3.944 18 H 0.029 0.971 19 C -0.507 4.507 20 H 0.053 0.947 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.046 3.954 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.403 0.597 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.409 0.591 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.088 0.912 49 H 0.257 0.743 50 H 0.049 0.951 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 19.648 -15.668 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.214 4.214 4 C -0.223 4.223 5 N -0.375 5.375 6 C 0.301 3.699 7 O -0.409 6.409 8 C -0.030 4.030 9 N -0.384 5.384 10 C 0.265 3.735 11 O -0.397 6.397 12 C -0.095 4.095 13 N -0.235 5.235 14 C -0.077 4.077 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.038 3.962 18 H 0.047 0.953 19 C -0.546 4.546 20 H 0.071 0.929 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.246 0.754 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.107 0.893 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.112 18.885 -15.440 26.805 hybrid contribution 1.347 1.120 0.049 1.753 sum -9.766 20.005 -15.390 27.063 Atomic orbital electron populations 1.22232 0.94052 1.04141 1.01806 1.20377 0.94547 0.91817 0.84986 1.22099 1.01753 0.94348 1.03170 1.22235 1.01054 1.02800 0.96190 1.46110 1.53950 1.11859 1.25539 1.20608 0.79985 0.82027 0.87299 1.90633 1.37501 1.66027 1.46727 1.21014 1.01058 0.84732 0.96221 1.46085 1.54904 1.10385 1.27044 1.22762 0.80344 0.89219 0.81141 1.90696 1.36759 1.76919 1.35293 1.22388 1.01442 0.87800 0.97836 1.62494 1.10854 1.49713 1.00433 1.22194 0.96883 0.98045 0.90599 1.21645 0.99795 0.99118 0.94733 1.21613 0.90284 0.99896 1.02845 1.18637 0.94178 0.94423 0.89001 0.95256 1.21190 0.91462 1.29309 1.12624 0.92922 1.24933 0.97907 0.95385 0.95768 1.69910 1.34679 1.31931 1.16398 0.86592 0.86339 0.77597 0.77779 1.19917 1.21171 1.21137 1.22657 0.83269 1.01639 1.00436 0.92682 0.91820 0.90224 0.91790 0.90729 0.91826 0.90235 0.91810 0.92619 0.76261 0.88591 0.88708 0.75401 0.88481 0.88039 0.93211 0.93139 0.93685 0.92424 0.95011 0.89349 0.93262 0.93220 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.40 37.16 0.31 -0.85 16 2 C 0.17 1.08 1.06 -131.82 -0.14 0.94 16 3 C -0.16 -0.65 8.59 37.15 0.32 -0.33 16 4 C -0.16 -1.20 8.40 37.16 0.31 -0.89 16 5 N -0.72 -4.81 5.11 -47.61 -0.24 -5.05 16 6 C 0.51 4.74 7.32 -10.98 -0.08 4.66 16 7 O -0.53 -6.19 11.88 5.56 0.07 -6.12 16 8 C 0.10 0.97 6.15 -5.19 -0.03 0.94 16 9 N -0.73 -8.52 5.53 -61.47 -0.34 -8.86 16 10 C 0.48 7.25 7.25 -10.98 -0.08 7.17 16 11 O -0.52 -9.98 11.62 5.56 0.06 -9.92 16 12 C 0.04 0.55 5.86 -4.98 -0.03 0.52 16 13 N -0.51 -9.86 4.86 -236.12 -1.15 -11.00 16 14 C 0.05 0.96 5.09 -3.84 -0.02 0.94 16 15 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 16 C -0.11 -2.73 5.02 -26.61 -0.13 -2.87 16 17 C 0.06 1.49 2.26 -91.69 -0.21 1.28 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 19 C -0.51 -14.56 8.56 -34.44 -0.29 -14.85 16 20 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -26.22 11.35 55.43 0.63 -25.59 16 23 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.05 1.05 4.20 -3.83 -0.02 1.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.76 6.16 -51.93 -0.32 0.44 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.78 6.18 -51.93 -0.32 0.45 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.41 4.31 7.44 -40.82 -0.30 4.01 16 41 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 42 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 1.02 6.00 -51.93 -0.31 0.71 16 44 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 51 H 0.06 1.52 5.36 -51.93 -0.28 1.24 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -33.55 390.81 -9.37 -42.91 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.92 Total: 3.99 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.35 Total: -3.23 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.10 Total: -50.50 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.13 Total: -16.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.55 -9.37 -42.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.377 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds