Wall clock time and date at job start Fri Apr 10 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53003 * 109.46673 * 240.00075 * 2 1 3 5 5 N 1.46499 * 109.47216 * 120.00346 * 2 1 3 6 6 C 1.34784 * 119.99971 * 59.99659 * 5 2 1 7 7 O 1.21274 * 119.99897 * 359.72827 * 6 5 2 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 2 9 9 N 1.46506 * 109.46874 * 180.02562 * 8 6 5 10 10 C 1.34773 * 119.99778 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00561 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.46893 * 109.47267 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00054 * 66.04584 * 13 12 10 15 15 C 1.53035 * 109.52412 * 174.15871 * 14 13 12 16 16 C 1.53121 * 109.27906 * 59.18383 * 15 14 13 17 17 C 1.53116 * 109.15826 * 302.34451 * 16 15 14 18 18 H 1.09005 * 109.50796 * 297.71352 * 17 16 15 19 19 C 1.50702 * 109.50319 * 177.59338 * 17 16 15 20 20 H 1.08003 * 119.99672 * 239.99914 * 19 17 16 21 21 C 1.37868 * 119.99887 * 60.00165 * 19 17 16 22 22 N 1.31516 * 120.00243 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 120.00129 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46806 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46824 * 119.99890 * 23 21 19 26 26 H 1.48496 * 109.47426 * 240.00061 * 23 21 19 27 27 C 1.46850 * 111.00233 * 301.83790 * 13 12 10 28 28 H 1.09002 * 109.46768 * 299.99531 * 1 2 3 29 29 H 1.08996 * 109.47401 * 59.99414 * 1 2 3 30 30 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47124 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47101 * 300.00609 * 3 2 1 33 33 H 1.09004 * 109.47330 * 60.00411 * 3 2 1 34 34 H 1.08998 * 109.47453 * 300.00086 * 4 2 1 35 35 H 1.09005 * 109.47378 * 60.00161 * 4 2 1 36 36 H 1.09000 * 109.47321 * 179.97438 * 4 2 1 37 37 H 0.96999 * 119.99984 * 239.99506 * 5 2 1 38 38 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 39 39 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 40 40 H 0.97000 * 119.99666 * 359.97438 * 9 8 6 41 41 H 1.08997 * 109.47359 * 300.00522 * 12 10 9 42 42 H 1.09002 * 109.46662 * 59.99891 * 12 10 9 43 43 H 1.09000 * 109.46844 * 294.17800 * 14 13 12 44 44 H 1.09001 * 109.46019 * 54.15000 * 14 13 12 45 45 H 1.08999 * 109.50590 * 179.12559 * 15 14 13 46 46 H 1.09000 * 109.50383 * 299.24231 * 15 14 13 47 47 H 1.08994 * 109.51928 * 62.24713 * 16 15 14 48 48 H 1.09000 * 109.52380 * 182.37647 * 16 15 14 49 49 H 0.96998 * 120.00189 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.46012 * 305.86047 * 27 13 12 51 51 H 1.09000 * 109.45720 * 65.82128 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.6927 -1.9811 1.4094 7 8 0.9914 -2.5689 0.6136 8 6 2.1956 -2.6916 2.6395 9 7 1.7076 -4.0730 2.6392 10 6 2.0332 -4.9029 3.6500 11 8 2.7306 -4.5064 4.5595 12 6 1.5308 -6.3237 3.6500 13 7 2.0210 -7.0165 4.8490 14 6 1.4366 -6.4392 6.0662 15 6 1.8533 -7.2741 7.2792 16 6 3.3810 -7.2892 7.3818 17 6 3.9664 -7.8497 6.0828 18 1 3.6326 -8.8785 5.9473 19 6 5.4713 -7.8132 6.1521 20 1 6.0316 -7.2425 5.4262 21 6 6.1329 -8.5082 7.1421 22 7 5.4505 -9.2027 8.0262 23 14 7.9984 -8.4635 7.2277 24 1 8.5242 -7.6168 6.1269 25 1 8.4205 -7.8956 8.5333 26 1 8.5334 -9.8420 7.0913 27 6 3.4884 -6.9982 4.9044 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.5761 -0.2193 1.8346 38 1 3.2856 -2.6917 2.6390 39 1 1.8327 -2.1779 3.5297 40 1 1.1495 -4.3901 1.9119 41 1 0.4408 -6.3237 3.6500 42 1 1.8940 -6.8375 2.7599 43 1 1.7920 -5.4162 6.1900 44 1 0.3498 -6.4383 5.9821 45 1 1.4321 -6.8364 8.1843 46 1 1.4863 -8.2938 7.1626 47 1 3.7456 -6.2739 7.5374 48 1 3.6836 -7.9173 8.2197 49 1 5.9159 -9.6914 8.7230 50 1 3.8919 -7.4032 3.9763 51 1 3.8341 -5.9726 5.0335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:27 Heat of formation + Delta-G solvation = -99.643750 kcal Electronic energy + Delta-G solvation = -28467.630691 eV Core-core repulsion = 24593.603836 eV Total energy + Delta-G solvation = -3874.026855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62482 -40.97384 -38.94665 -37.64449 -35.60270 -35.30433 -33.55275 -33.21170 -31.63328 -29.71526 -28.26333 -28.20835 -27.26067 -26.89537 -23.86182 -23.12850 -22.25343 -21.55555 -20.62186 -20.45368 -18.82377 -18.39644 -17.50488 -17.24588 -16.99596 -16.78833 -16.50123 -15.99318 -15.84264 -15.66130 -15.32174 -15.11585 -14.88428 -14.53202 -14.32353 -14.30081 -14.07366 -13.70127 -13.56811 -13.33937 -13.20899 -13.03127 -12.97541 -12.91052 -12.78282 -12.53082 -12.50511 -12.24017 -12.12699 -12.00775 -11.75662 -11.64558 -11.42132 -11.35808 -10.85094 -10.76510 -10.63650 -10.37355 -10.22470 -10.08250 -8.96224 -8.06429 -6.19960 1.39383 1.40103 1.46028 1.52460 1.60472 1.78151 2.43399 2.46068 3.11270 3.19721 3.53522 3.88739 3.96773 3.97341 4.12318 4.18197 4.24329 4.30965 4.35326 4.41351 4.56542 4.60921 4.68621 4.71918 4.75263 4.80576 4.81967 4.85929 4.94055 4.97872 4.99080 5.09393 5.17248 5.21335 5.21612 5.32725 5.38470 5.41353 5.45605 5.54286 5.56288 5.65526 5.97352 6.13053 6.21391 6.22696 6.46808 6.48971 6.53727 6.91977 7.11911 7.24084 7.46973 8.98556 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.002386 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.799351 B =11731.311960 C =12638.891664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.164 3.836 3 C -0.150 4.150 4 C -0.163 4.163 5 N -0.709 5.709 6 C 0.518 3.482 7 O -0.557 6.557 8 C 0.097 3.903 9 N -0.712 5.712 10 C 0.481 3.519 11 O -0.566 6.566 12 C 0.036 3.964 13 N -0.521 5.521 14 C 0.057 3.943 15 C -0.110 4.110 16 C -0.100 4.100 17 C 0.054 3.946 18 H -0.004 1.004 19 C -0.532 4.532 20 H 0.045 0.955 21 C 0.012 3.988 22 N -0.915 5.915 23 Si 0.955 3.045 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.277 1.277 27 C 0.065 3.935 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.417 0.583 41 H 0.134 0.866 42 H 0.119 0.881 43 H 0.037 0.963 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.013 0.987 48 H 0.057 0.943 49 H 0.260 0.740 50 H 0.046 0.954 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 21.415 -16.874 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 C -0.208 4.208 4 C -0.221 4.221 5 N -0.363 5.363 6 C 0.304 3.696 7 O -0.436 6.436 8 C -0.031 4.031 9 N -0.369 5.369 10 C 0.268 3.732 11 O -0.445 6.445 12 C -0.096 4.096 13 N -0.243 5.243 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.138 4.138 17 C 0.035 3.965 18 H 0.014 0.986 19 C -0.571 4.571 20 H 0.063 0.937 21 C -0.187 4.187 22 N -0.555 5.555 23 Si 0.780 3.220 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.203 1.203 27 C -0.063 4.063 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.255 0.745 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.806 20.693 -16.685 29.086 hybrid contribution 1.511 0.611 0.360 1.669 sum -10.296 21.304 -16.325 28.747 Atomic orbital electron populations 1.22191 0.94474 1.02616 1.02650 1.20507 0.94264 0.93056 0.84271 1.22064 1.02114 0.92483 1.04114 1.22203 1.01037 1.01474 0.97345 1.46061 1.53317 1.11021 1.25851 1.20455 0.79770 0.82700 0.86690 1.90638 1.38790 1.66780 1.47426 1.21104 1.01084 0.83814 0.97057 1.45886 1.53977 1.10867 1.26131 1.22667 0.79800 0.89654 0.81078 1.90690 1.38924 1.77703 1.37158 1.22552 1.03488 0.87326 0.96215 1.62366 1.08310 1.51384 1.02246 1.22144 0.98864 0.96525 0.89547 1.21568 0.96316 0.99723 0.97128 1.21406 0.93678 0.97692 1.01058 1.18573 0.93370 0.93270 0.91292 0.98604 1.21516 0.93050 1.29664 1.12853 0.93671 1.25734 1.02689 0.94928 0.95310 1.70045 1.36468 1.32268 1.16733 0.85560 0.80577 0.77910 0.77923 1.19415 1.20543 1.20259 1.22236 0.86018 0.99612 0.98411 0.92314 0.90535 0.92840 0.91193 0.89706 0.91003 0.92902 0.90484 0.92529 0.74816 0.88595 0.87942 0.74458 0.84811 0.86290 0.94520 0.89343 0.91563 0.92766 0.96831 0.92448 0.93070 0.93526 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.40 71.98 0.60 -1.45 16 2 C 0.16 1.82 1.06 3.60 0.00 1.82 16 3 C -0.15 -0.86 8.59 71.98 0.62 -0.24 16 4 C -0.16 -2.18 8.40 71.98 0.60 -1.57 16 5 N -0.71 -8.34 5.11 -422.93 -2.16 -10.50 16 6 C 0.52 8.97 7.32 87.65 0.64 9.61 16 7 O -0.56 -12.59 11.88 -3.01 -0.04 -12.63 16 8 C 0.10 1.81 6.15 85.63 0.53 2.34 16 9 N -0.71 -15.64 5.53 -466.77 -2.58 -18.22 16 10 C 0.48 13.91 7.25 87.66 0.64 14.54 16 11 O -0.57 -21.51 11.62 -3.03 -0.04 -21.54 16 12 C 0.04 0.96 5.86 85.56 0.50 1.46 16 13 N -0.52 -19.47 4.86 -900.94 -4.38 -23.85 16 14 C 0.06 2.07 5.09 86.33 0.44 2.51 16 15 C -0.11 -4.55 6.09 30.65 0.19 -4.37 16 16 C -0.10 -5.22 5.02 30.67 0.15 -5.07 16 17 C 0.05 2.94 2.26 -11.49 -0.03 2.92 16 18 H 0.00 -0.26 8.14 -2.38 -0.02 -0.27 16 19 C -0.53 -31.56 8.56 25.60 0.22 -31.34 16 20 H 0.04 2.67 7.74 -2.91 -0.02 2.64 16 21 C 0.01 0.69 5.30 84.65 0.45 1.14 16 22 N -0.92 -55.39 11.35 21.44 0.24 -55.14 16 23 Si 0.95 45.79 29.54 68.60 2.03 47.82 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 C 0.06 2.99 4.20 86.33 0.36 3.35 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.99 6.16 -2.39 -0.01 0.97 16 31 H 0.07 0.34 8.14 -2.38 -0.02 0.33 16 32 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.05 1.01 6.18 -2.39 -0.01 1.00 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.41 2.85 8.47 -92.71 -0.79 2.06 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.42 8.04 7.44 -92.71 -0.69 7.35 16 41 H 0.13 2.65 8.06 -2.39 -0.02 2.63 16 42 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.04 1.47 6.00 -2.39 -0.01 1.45 16 44 H 0.09 2.59 8.06 -2.39 -0.02 2.57 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 3.32 6.15 -2.39 -0.01 3.30 16 49 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 50 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 51 H 0.05 2.34 5.36 -2.39 -0.01 2.32 16 Total: -1.00 -75.46 390.81 -1.54 -77.00 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.55 Total: 21.40 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.92 Total: -4.34 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -8.87 Total: -107.71 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.07 Total: -34.17 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.46 -1.54 -77.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.640 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds