Wall clock time and date at job start Fri Apr 10 2020 18:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 C 1.52999 * 109.46878 * 239.99827 * 2 1 3 5 5 N 1.46497 * 109.47292 * 120.00156 * 2 1 3 6 6 C 1.46766 * 124.34968 * 59.99498 * 5 2 1 7 7 C 1.54480 * 105.47279 * 162.96302 * 6 5 2 8 8 H 1.08994 * 110.97331 * 267.26341 * 7 6 5 9 9 C 1.53000 * 110.96856 * 143.53574 * 7 6 5 10 10 N 1.46505 * 109.47261 * 178.09097 * 9 7 6 11 11 C 1.34771 * 120.00290 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99839 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00148 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46963 * 319.99765 * 13 11 10 15 15 N 1.46905 * 109.47256 * 200.00322 * 13 11 10 16 16 C 1.52997 * 109.47337 * 80.00074 * 13 11 10 17 17 C 1.53000 * 109.47060 * 185.00273 * 16 13 11 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46828 * 90.00241 * 22 20 18 24 24 H 1.48494 * 109.47178 * 209.99936 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00183 * 22 20 18 26 26 C 1.54634 * 101.80011 * 25.40032 * 7 6 5 27 27 C 1.34422 * 124.35156 * 239.97785 * 5 2 1 28 28 O 1.21279 * 124.93697 * 0.42954 * 27 5 2 29 29 H 1.09003 * 109.46956 * 299.99922 * 1 2 3 30 30 H 1.08997 * 109.47216 * 59.99804 * 1 2 3 31 31 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47119 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46799 * 300.00188 * 3 2 1 34 34 H 1.09003 * 109.47093 * 60.00162 * 3 2 1 35 35 H 1.08999 * 109.47378 * 299.99911 * 4 2 1 36 36 H 1.09004 * 109.47111 * 59.99829 * 4 2 1 37 37 H 1.08997 * 109.47367 * 179.97438 * 4 2 1 38 38 H 1.08997 * 110.24611 * 43.96598 * 6 5 2 39 39 H 1.09004 * 110.32506 * 282.00402 * 6 5 2 40 40 H 1.08993 * 109.47236 * 58.09134 * 9 7 6 41 41 H 1.08998 * 109.47377 * 298.08693 * 9 7 6 42 42 H 0.97003 * 119.99668 * 359.97438 * 10 9 7 43 43 H 1.00898 * 110.99773 * 176.04509 * 15 13 11 44 44 H 1.00898 * 110.99705 * 300.00162 * 15 13 11 45 45 H 1.09002 * 109.47153 * 64.99954 * 16 13 11 46 46 H 1.09001 * 109.46832 * 305.00144 * 16 13 11 47 47 H 1.09001 * 109.47194 * 299.99650 * 17 16 13 48 48 H 1.08992 * 109.47399 * 59.99823 * 17 16 13 49 49 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 50 50 H 1.08997 * 110.48625 * 93.89281 * 26 7 6 51 51 H 1.08991 * 110.48725 * 216.54366 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 1.7232 -2.0907 1.5225 7 6 2.7669 -2.4946 2.5874 8 1 3.6436 -2.9459 2.1230 9 6 2.1539 -3.4374 3.6249 10 7 3.1812 -3.8349 4.5908 11 6 2.8684 -4.6682 5.6027 12 8 1.7364 -5.0894 5.7135 13 6 3.9250 -5.0767 6.5966 14 1 4.8652 -5.2548 6.0746 15 7 3.5043 -6.3068 7.2808 16 6 4.1161 -3.9607 7.6255 17 6 5.2735 -4.3205 8.5592 18 6 5.4614 -3.2214 9.5730 19 1 4.8197 -2.3530 9.5531 20 6 6.4524 -3.3247 10.5260 21 7 7.2335 -4.3825 10.5506 22 14 6.6857 -1.9620 11.7823 23 1 5.8510 -2.2429 12.9780 24 1 8.1147 -1.8954 12.1807 25 1 6.2769 -0.6645 11.1868 26 6 3.1178 -1.1281 3.2204 27 6 2.7948 -0.1235 2.1356 28 8 3.1808 1.0260 2.1164 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.8286 -2.7151 0.6353 39 1 0.7157 -2.1805 1.9287 40 1 1.7632 -4.3234 3.1247 41 1 1.3437 -2.9271 4.1457 42 1 4.0867 -3.4984 4.5019 43 1 4.2241 -6.6370 7.9060 44 1 2.6343 -6.1675 7.7724 45 1 3.2024 -3.8431 8.2080 46 1 4.3415 -3.0267 7.1107 47 1 5.0482 -5.2545 9.0739 48 1 6.1872 -4.4381 7.9767 49 1 7.9304 -4.4553 11.2213 50 1 2.5036 -0.9473 4.1025 51 1 4.1764 -1.0868 3.4765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595946678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:37 Heat of formation + Delta-G solvation = -90.203156 kcal Electronic energy + Delta-G solvation = -28057.852381 eV Core-core repulsion = 24184.234901 eV Total energy + Delta-G solvation = -3873.617480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17325 -39.63001 -37.11689 -36.89266 -35.48519 -34.27530 -32.85860 -30.99384 -29.90043 -28.53392 -27.84920 -27.78049 -26.83124 -25.31775 -23.49721 -21.96507 -21.17308 -20.75046 -19.75098 -18.91355 -17.42288 -17.08654 -16.77362 -16.23473 -15.74524 -15.58103 -15.14070 -14.78041 -14.50327 -14.41824 -14.32947 -14.13381 -13.99920 -13.92952 -13.70610 -13.11151 -13.06652 -12.87901 -12.62862 -12.55199 -12.44830 -12.16336 -12.11221 -12.01748 -11.71309 -11.64317 -11.57797 -11.39050 -11.26301 -11.10322 -10.93117 -10.68890 -10.00949 -9.94354 -9.64268 -9.31686 -9.22824 -9.07070 -9.01736 -8.44956 -8.21285 -6.09531 -4.12649 2.36017 2.54751 2.89099 3.18127 3.27135 3.33981 3.37221 3.94058 4.05201 4.28407 4.39036 4.39248 4.48097 4.59158 4.64901 4.89328 4.96962 5.07342 5.10879 5.14751 5.17162 5.19114 5.26850 5.30422 5.32406 5.40319 5.41121 5.45022 5.54924 5.55522 5.60722 5.62413 5.72868 5.76257 5.87172 6.00503 6.26197 6.33772 6.42696 6.49939 6.84147 6.85520 7.39121 7.50084 7.58836 7.65494 7.87152 7.88637 7.94865 8.29776 8.41123 8.93354 9.52487 11.01316 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.002383 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.642390 B =11745.379004 C =13198.556243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.612 5.612 6 C 0.111 3.889 7 C -0.112 4.112 8 H 0.100 0.900 9 C 0.133 3.867 10 N -0.735 5.735 11 C 0.527 3.473 12 O -0.538 6.538 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.155 4.155 27 C 0.520 3.480 28 O -0.526 6.526 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.403 0.597 43 H 0.354 0.646 44 H 0.345 0.655 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.262 0.738 50 H 0.109 0.891 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 4.712 -24.340 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 C -0.199 4.199 4 C -0.216 4.216 5 N -0.347 5.347 6 C -0.013 4.013 7 C -0.131 4.131 8 H 0.118 0.882 9 C 0.009 3.991 10 N -0.389 5.389 11 C 0.314 3.686 12 O -0.413 6.413 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.195 4.195 27 C 0.308 3.692 28 O -0.403 6.403 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.237 0.763 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.127 0.873 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.781 4.645 -24.977 28.004 hybrid contribution 0.725 1.374 1.565 2.205 sum -11.056 6.019 -23.412 26.582 Atomic orbital electron populations 1.22195 0.94217 1.02444 1.02726 1.20473 0.93854 0.93065 0.83669 1.22101 1.02553 0.93138 1.02059 1.22189 1.01859 1.00703 0.96821 1.48430 1.51153 1.12505 1.22623 1.21959 0.98828 0.82090 0.98383 1.22393 0.99528 0.95327 0.95900 0.88204 1.21201 0.91049 0.97638 0.89236 1.45941 1.13747 1.50218 1.28984 1.20897 0.89846 0.77014 0.80887 1.90639 1.22254 1.54370 1.74085 1.21477 0.95885 0.92068 0.94637 0.88566 1.58749 1.09216 1.29766 1.38588 1.22381 1.01733 0.96548 0.97047 1.19102 0.91729 0.97065 0.93394 1.21177 1.16185 1.05075 1.13763 0.92717 1.25011 0.95788 0.95812 0.97702 1.69943 1.19899 1.28143 1.35216 0.86589 0.77335 0.82387 0.81688 1.20624 1.21150 1.19846 1.22543 1.05287 0.93193 0.98472 1.20897 0.77350 0.87936 0.83022 1.90741 1.54513 1.17768 1.77251 0.92078 0.91271 0.92146 0.91255 0.92450 0.91203 0.92157 0.91251 0.92074 0.89962 0.90576 0.90933 0.91145 0.76306 0.83023 0.84145 0.92691 0.92498 0.96416 0.96328 0.92874 0.87290 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.54 37.16 0.32 -0.62 16 2 C 0.17 1.25 1.20 -131.82 -0.16 1.09 16 3 C -0.14 -1.24 7.00 37.16 0.26 -0.98 16 4 C -0.16 -0.89 8.49 37.16 0.32 -0.57 16 5 N -0.61 -4.92 2.76 -157.55 -0.43 -5.35 16 6 C 0.11 0.65 6.16 -3.12 -0.02 0.63 16 7 C -0.11 -0.72 3.18 -88.98 -0.28 -1.00 16 8 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.13 1.15 4.96 -4.04 -0.02 1.13 16 10 N -0.74 -8.01 5.45 -60.30 -0.33 -8.33 16 11 C 0.53 8.00 7.08 -10.99 -0.08 7.92 16 12 O -0.54 -9.86 16.25 5.56 0.09 -9.77 16 13 C 0.07 1.20 3.21 -68.86 -0.22 0.98 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 15 N -0.83 -13.83 8.94 -5.65 -0.05 -13.89 16 16 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 17 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 18 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.15 -1.29 6.27 -26.71 -0.17 -1.46 16 27 C 0.52 5.51 7.84 -10.83 -0.08 5.43 16 28 O -0.53 -7.49 13.99 5.56 0.08 -7.41 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 32 H 0.07 0.74 7.08 -51.93 -0.37 0.37 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.75 7.06 -51.93 -0.37 0.39 16 35 H 0.06 0.29 7.21 -51.93 -0.37 -0.09 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.36 7.12 -51.93 -0.37 -0.01 16 39 H 0.08 0.41 7.89 -51.93 -0.41 0.00 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.68 8.01 -51.93 -0.42 0.26 16 42 H 0.40 3.65 8.43 -40.82 -0.34 3.30 16 43 H 0.35 5.95 7.55 -39.29 -0.30 5.65 16 44 H 0.35 5.85 8.58 -39.29 -0.34 5.51 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 50 H 0.11 0.96 7.81 -51.93 -0.41 0.55 16 51 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -33.44 404.80 -8.71 -42.14 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -9.07 Total: 8.14 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -0.81 Total: -2.73 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.08 Total: -52.69 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.17 Total: -17.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.44 -8.71 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595946678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.059 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds