Wall clock time and date at job start Fri Apr 10 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 C 1.52999 * 109.46878 * 239.99827 * 2 1 3 5 5 N 1.46497 * 109.47292 * 120.00156 * 2 1 3 6 6 C 1.46766 * 124.34968 * 59.99498 * 5 2 1 7 7 C 1.54480 * 105.47279 * 162.96302 * 6 5 2 8 8 H 1.08994 * 110.97331 * 267.26341 * 7 6 5 9 9 C 1.53000 * 110.96856 * 143.53574 * 7 6 5 10 10 N 1.46505 * 109.47261 * 178.09097 * 9 7 6 11 11 C 1.34771 * 120.00290 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99839 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00148 * 180.02562 * 11 10 9 14 14 H 1.09004 * 109.46963 * 319.99765 * 13 11 10 15 15 N 1.46905 * 109.47256 * 200.00322 * 13 11 10 16 16 C 1.52997 * 109.47337 * 80.00074 * 13 11 10 17 17 C 1.53000 * 109.47060 * 185.00273 * 16 13 11 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46828 * 90.00241 * 22 20 18 24 24 H 1.48494 * 109.47178 * 209.99936 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00183 * 22 20 18 26 26 C 1.54634 * 101.80011 * 25.40032 * 7 6 5 27 27 C 1.34422 * 124.35156 * 239.97785 * 5 2 1 28 28 O 1.21279 * 124.93697 * 0.42954 * 27 5 2 29 29 H 1.09003 * 109.46956 * 299.99922 * 1 2 3 30 30 H 1.08997 * 109.47216 * 59.99804 * 1 2 3 31 31 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47119 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46799 * 300.00188 * 3 2 1 34 34 H 1.09003 * 109.47093 * 60.00162 * 3 2 1 35 35 H 1.08999 * 109.47378 * 299.99911 * 4 2 1 36 36 H 1.09004 * 109.47111 * 59.99829 * 4 2 1 37 37 H 1.08997 * 109.47367 * 179.97438 * 4 2 1 38 38 H 1.08997 * 110.24611 * 43.96598 * 6 5 2 39 39 H 1.09004 * 110.32506 * 282.00402 * 6 5 2 40 40 H 1.08993 * 109.47236 * 58.09134 * 9 7 6 41 41 H 1.08998 * 109.47377 * 298.08693 * 9 7 6 42 42 H 0.97003 * 119.99668 * 359.97438 * 10 9 7 43 43 H 1.00898 * 110.99773 * 176.04509 * 15 13 11 44 44 H 1.00898 * 110.99705 * 300.00162 * 15 13 11 45 45 H 1.09002 * 109.47153 * 64.99954 * 16 13 11 46 46 H 1.09001 * 109.46832 * 305.00144 * 16 13 11 47 47 H 1.09001 * 109.47194 * 299.99650 * 17 16 13 48 48 H 1.08992 * 109.47399 * 59.99823 * 17 16 13 49 49 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 50 50 H 1.08997 * 110.48625 * 93.89281 * 26 7 6 51 51 H 1.08991 * 110.48725 * 216.54366 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 1.7232 -2.0907 1.5225 7 6 2.7669 -2.4946 2.5874 8 1 3.6436 -2.9459 2.1230 9 6 2.1539 -3.4374 3.6249 10 7 3.1812 -3.8349 4.5908 11 6 2.8684 -4.6682 5.6027 12 8 1.7364 -5.0894 5.7135 13 6 3.9250 -5.0767 6.5966 14 1 4.8652 -5.2548 6.0746 15 7 3.5043 -6.3068 7.2808 16 6 4.1161 -3.9607 7.6255 17 6 5.2735 -4.3205 8.5592 18 6 5.4614 -3.2214 9.5730 19 1 4.8197 -2.3530 9.5531 20 6 6.4524 -3.3247 10.5260 21 7 7.2335 -4.3825 10.5506 22 14 6.6857 -1.9620 11.7823 23 1 5.8510 -2.2429 12.9780 24 1 8.1147 -1.8954 12.1807 25 1 6.2769 -0.6645 11.1868 26 6 3.1178 -1.1281 3.2204 27 6 2.7948 -0.1235 2.1356 28 8 3.1808 1.0260 2.1164 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.8286 -2.7151 0.6353 39 1 0.7157 -2.1805 1.9287 40 1 1.7632 -4.3234 3.1247 41 1 1.3437 -2.9271 4.1457 42 1 4.0867 -3.4984 4.5019 43 1 4.2241 -6.6370 7.9060 44 1 2.6343 -6.1675 7.7724 45 1 3.2024 -3.8431 8.2080 46 1 4.3415 -3.0267 7.1107 47 1 5.0482 -5.2545 9.0739 48 1 6.1872 -4.4381 7.9767 49 1 7.9304 -4.4553 11.2213 50 1 2.5036 -0.9473 4.1025 51 1 4.1764 -1.0868 3.4765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595946678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:36 Heat of formation + Delta-G solvation = -114.175963 kcal Electronic energy + Delta-G solvation = -28058.891920 eV Core-core repulsion = 24184.234901 eV Total energy + Delta-G solvation = -3874.657019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87516 -40.80082 -37.97296 -37.59347 -36.94638 -35.20403 -34.81538 -31.74945 -31.64585 -29.25550 -28.62974 -28.22630 -28.02791 -26.55793 -24.94020 -22.62431 -22.35709 -21.83159 -20.95909 -19.62319 -18.84527 -18.06256 -17.84964 -17.42151 -16.76490 -16.53281 -16.32450 -16.06366 -15.88222 -15.45181 -15.22317 -15.02498 -14.79733 -14.72291 -14.61226 -14.45699 -14.27816 -13.94528 -13.59669 -13.47395 -13.33486 -13.08332 -12.97931 -12.93859 -12.77820 -12.62975 -12.59425 -12.50652 -12.25722 -12.21709 -11.94656 -11.85560 -11.77995 -11.69132 -11.28942 -10.70262 -10.55294 -10.45740 -10.04446 -9.66288 -9.60344 -8.21095 -6.30836 1.39370 1.40192 1.50471 1.56877 1.67545 1.90250 2.24264 2.40202 3.12745 3.27616 3.42522 3.69942 3.79437 3.81850 3.89178 3.93185 4.03778 4.11329 4.17719 4.30239 4.32104 4.54116 4.59929 4.64378 4.67288 4.69896 4.70994 4.74457 4.79901 4.82853 4.87710 4.91836 4.94895 4.96067 5.12120 5.15557 5.18522 5.29137 5.37321 5.47943 5.49133 5.68355 5.72741 5.82442 6.11288 6.16121 6.22630 6.50600 6.57845 6.85113 7.18968 7.29060 7.38192 8.89516 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.002383 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.642390 B =11745.379004 C =13198.556243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.135 4.135 4 C -0.152 4.152 5 N -0.607 5.607 6 C 0.109 3.891 7 C -0.094 4.094 8 H 0.118 0.882 9 C 0.134 3.866 10 N -0.718 5.718 11 C 0.529 3.471 12 O -0.571 6.571 13 C 0.079 3.921 14 H 0.110 0.890 15 N -0.831 5.831 16 C -0.121 4.121 17 C 0.029 3.971 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.926 5.926 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.267 1.267 26 C -0.154 4.154 27 C 0.508 3.492 28 O -0.574 6.574 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.351 0.649 44 H 0.343 0.657 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.002 0.998 48 H 0.003 0.997 49 H 0.263 0.737 50 H 0.103 0.897 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 4.512 -26.067 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.082 3.918 3 C -0.193 4.193 4 C -0.210 4.210 5 N -0.340 5.340 6 C -0.013 4.013 7 C -0.113 4.113 8 H 0.136 0.864 9 C 0.011 3.989 10 N -0.371 5.371 11 C 0.315 3.685 12 O -0.450 6.450 13 C -0.036 4.036 14 H 0.128 0.872 15 N -0.362 5.362 16 C -0.161 4.161 17 C -0.008 4.008 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.566 5.566 22 Si 0.781 3.219 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.191 1.191 26 C -0.194 4.194 27 C 0.297 3.703 28 O -0.454 6.454 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.250 0.750 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.020 0.980 48 H 0.021 0.979 49 H 0.072 0.928 50 H 0.121 0.879 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.606 4.441 -26.752 29.905 hybrid contribution 0.965 1.450 2.059 2.697 sum -11.640 5.892 -24.693 27.928 Atomic orbital electron populations 1.22158 0.92845 1.03361 1.02701 1.20651 0.94859 0.92114 0.84165 1.22006 1.00962 0.94698 1.01624 1.22143 1.01117 1.01530 0.96163 1.48563 1.49939 1.13334 1.22198 1.22152 0.98995 0.80935 0.99247 1.22279 1.00265 0.93558 0.95222 0.86375 1.21314 0.90313 0.98283 0.89010 1.45826 1.14900 1.48411 1.27986 1.20598 0.88816 0.77554 0.81529 1.90630 1.23214 1.55972 1.75152 1.21434 0.97170 0.90702 0.94318 0.87192 1.58775 1.08994 1.29935 1.38467 1.22130 0.99016 0.98108 0.96838 1.18973 0.92850 0.95544 0.93415 1.21631 1.16050 1.05842 1.14604 0.92795 1.25839 0.95655 0.98062 0.99746 1.70050 1.20532 1.29887 1.36137 0.85583 0.77348 0.79719 0.79227 1.20122 1.20722 1.19101 1.22532 1.05305 0.93806 0.97740 1.21301 0.77427 0.87654 0.83905 1.90716 1.56516 1.19764 1.78421 0.93641 0.89839 0.90690 0.93588 0.90549 0.93861 0.90527 0.89915 0.93198 0.87371 0.89614 0.90085 0.91864 0.74998 0.83377 0.84398 0.93848 0.91434 0.97982 0.97891 0.92766 0.87874 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.54 71.98 0.61 -0.87 16 2 C 0.16 2.14 1.20 3.61 0.00 2.15 16 3 C -0.14 -2.42 7.00 71.98 0.50 -1.91 16 4 C -0.15 -1.31 8.49 71.98 0.61 -0.70 16 5 N -0.61 -8.87 2.76 -770.95 -2.13 -11.00 16 6 C 0.11 0.94 6.16 86.83 0.54 1.47 16 7 C -0.09 -0.95 3.18 -9.73 -0.03 -0.98 16 8 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 9 C 0.13 1.97 4.96 86.38 0.43 2.40 16 10 N -0.72 -14.02 5.45 -463.07 -2.52 -16.55 16 11 C 0.53 15.23 7.08 87.66 0.62 15.85 16 12 O -0.57 -20.24 16.25 -3.02 -0.05 -20.29 16 13 C 0.08 2.46 3.21 44.17 0.14 2.60 16 14 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 15 N -0.83 -27.34 8.94 -171.79 -1.54 -28.88 16 16 C -0.12 -4.51 4.78 30.59 0.15 -4.36 16 17 C 0.03 1.41 4.74 29.85 0.14 1.55 16 18 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 19 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 20 C 0.01 0.30 5.46 84.66 0.46 0.77 16 21 N -0.93 -54.04 13.29 21.45 0.28 -53.75 16 22 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C -0.15 -2.40 6.27 30.61 0.19 -2.21 16 27 C 0.51 10.72 7.84 87.92 0.69 11.41 16 28 O -0.57 -17.13 13.99 -3.03 -0.04 -17.17 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.52 7.90 -2.39 -0.02 0.50 16 32 H 0.04 1.02 7.08 -2.39 -0.02 1.01 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.04 0.99 7.06 -2.39 -0.02 0.97 16 35 H 0.08 0.43 7.21 -2.39 -0.02 0.41 16 36 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.11 0.46 7.12 -2.39 -0.02 0.44 16 39 H 0.09 0.64 7.89 -2.39 -0.02 0.62 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.08 8.01 -2.39 -0.02 1.06 16 42 H 0.41 6.42 8.43 -92.71 -0.78 5.64 16 43 H 0.35 11.86 7.55 -89.70 -0.68 11.18 16 44 H 0.34 11.60 8.58 -89.70 -0.77 10.83 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 48 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 50 H 0.10 1.75 7.81 -2.39 -0.02 1.73 16 51 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.59 404.80 0.04 -73.56 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -1.29 Total: 30.75 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.29 Total: -2.15 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -5.90 Total: -110.18 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.09 Total: -37.46 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.59 0.04 -73.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595946678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.619 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds