Wall clock time and date at job start Fri Apr 10 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.30850 * 2 1 4 4 C 1.54798 * 110.61016 * 237.82040 * 2 1 3 5 5 N 1.48142 * 104.41846 * 265.17762 * 4 2 1 6 6 C 1.34775 * 127.83942 * 140.36889 * 5 4 2 7 7 O 1.21582 * 120.00706 * 179.68055 * 6 5 4 8 8 N 1.34778 * 119.99707 * 359.68427 * 6 5 4 9 9 C 1.46496 * 120.00273 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.46215 * 154.99748 * 9 8 6 11 11 C 1.53189 * 109.30964 * 181.37334 * 10 9 8 12 12 N 1.46932 * 108.89486 * 305.29189 * 11 10 9 13 13 C 1.36934 * 120.62713 * 233.67791 * 12 11 10 14 14 H 1.07999 * 120.00365 * 27.39524 * 13 12 11 15 15 C 1.38820 * 119.99352 * 207.39446 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26040 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26046 * 15 13 12 18 18 H 1.48505 * 109.47107 * 90.00031 * 17 15 13 19 19 H 1.48498 * 109.47190 * 209.99825 * 17 15 13 20 20 H 1.48496 * 109.47303 * 330.00267 * 17 15 13 21 21 C 1.47199 * 118.55133 * 53.54206 * 12 11 10 22 22 C 1.53044 * 109.44899 * 275.05938 * 9 8 6 23 23 C 1.48153 * 104.32558 * 320.11013 * 5 4 2 24 24 C 1.54289 * 110.34459 * 122.17565 * 2 1 3 25 25 C 1.52997 * 110.43021 * 0.05896 * 24 2 1 26 26 C 1.52993 * 110.34233 * 237.84651 * 24 2 1 27 27 O 1.42907 * 109.47224 * 183.00852 * 26 24 2 28 28 H 1.09007 * 109.47020 * 297.82573 * 1 2 3 29 29 H 1.08997 * 109.47303 * 57.82111 * 1 2 3 30 30 H 1.09002 * 109.47118 * 177.82975 * 1 2 3 31 31 H 1.09003 * 110.53839 * 146.43936 * 4 2 1 32 32 H 1.08998 * 110.46086 * 23.88156 * 4 2 1 33 33 H 0.97002 * 120.00140 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.45832 * 35.02232 * 9 8 6 35 35 H 1.08994 * 109.49759 * 61.42304 * 10 9 8 36 36 H 1.08999 * 109.52410 * 301.33915 * 10 9 8 37 37 H 1.09005 * 109.59042 * 65.15548 * 11 10 9 38 38 H 1.09001 * 109.58782 * 185.43429 * 11 10 9 39 39 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.53355 * 186.67380 * 21 12 11 41 41 H 1.09002 * 109.67913 * 66.37168 * 21 12 11 42 42 H 1.08997 * 109.49664 * 298.57053 * 22 9 8 43 43 H 1.09005 * 109.49458 * 58.66540 * 22 9 8 44 44 H 1.08995 * 110.40458 * 158.62962 * 23 5 4 45 45 H 1.09001 * 110.40156 * 281.06020 * 23 5 4 46 46 H 1.08998 * 109.47273 * 177.04841 * 25 24 2 47 47 H 1.09003 * 109.47368 * 297.04254 * 25 24 2 48 48 H 1.09002 * 109.47269 * 57.04120 * 25 24 2 49 49 H 1.09003 * 109.47172 * 303.00392 * 26 24 2 50 50 H 1.08995 * 109.47345 * 63.00721 * 26 24 2 51 51 H 0.96699 * 113.99990 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0749 -0.7717 -1.2263 5 7 2.3176 -2.1430 -0.7212 6 6 2.0833 -3.3103 -1.3528 7 8 2.3436 -4.3625 -0.8022 8 7 1.5604 -3.3111 -2.5951 9 6 1.3051 -4.5799 -3.2815 10 6 0.2000 -4.3834 -4.3219 11 6 -0.0879 -5.7196 -5.0135 12 7 1.1668 -6.2510 -5.5632 13 6 1.2563 -6.6029 -6.8835 14 1 0.6260 -6.1195 -7.6152 15 6 2.1574 -7.5811 -7.2814 16 7 2.6736 -8.4016 -6.3912 17 14 2.6371 -7.7327 -9.0805 18 1 3.8237 -6.8814 -9.3498 19 1 2.9636 -9.1484 -9.3881 20 1 1.5056 -7.2889 -9.9336 21 6 2.3240 -6.3933 -4.6646 22 6 2.5850 -5.0496 -3.9769 23 6 2.8824 -1.9401 0.6333 24 6 2.0664 -0.7704 1.2245 25 6 0.9077 -1.3037 2.0694 26 6 2.9671 0.1334 2.0686 27 8 3.5089 -0.6171 3.1574 28 1 -0.3633 0.4797 0.9089 29 1 -0.3634 0.5473 -0.8698 30 1 -0.3633 -1.0269 -0.0389 31 1 3.0056 -0.3252 -1.5764 32 1 1.3350 -0.7867 -2.0266 33 1 1.3523 -2.4717 -3.0343 34 1 0.9908 -5.3291 -2.5548 35 1 0.5237 -3.6525 -5.0629 36 1 -0.7045 -4.0263 -3.8295 37 1 -0.4976 -6.4247 -4.2902 38 1 -0.8044 -5.5664 -5.8206 39 1 3.3030 -9.0854 -6.6694 40 1 3.2010 -6.6841 -5.2430 41 1 2.1136 -7.1539 -3.9127 42 1 2.8862 -4.3124 -4.7211 43 1 3.3782 -5.1668 -3.2384 44 1 2.7524 -2.8378 1.2376 45 1 3.9373 -1.6734 0.5691 46 1 1.3029 -1.8887 2.8999 47 1 0.3265 -0.4675 2.4582 48 1 0.2683 -1.9348 1.4522 49 1 3.7798 0.5156 1.4509 50 1 2.3830 0.9675 2.4574 51 1 4.0915 -0.1062 3.7359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596275505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:09 Heat of formation + Delta-G solvation = -55.500378 kcal Electronic energy + Delta-G solvation = -29174.847409 eV Core-core repulsion = 25302.734754 eV Total energy + Delta-G solvation = -3872.112655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.68066 -39.02719 -37.29050 -36.56062 -34.31731 -33.52526 -31.98075 -31.26761 -29.98207 -29.40696 -27.82102 -26.14549 -25.93065 -24.63346 -22.46172 -22.14732 -21.71188 -19.84389 -19.32389 -19.04976 -18.00665 -17.43172 -16.67105 -16.39451 -15.88216 -15.37543 -14.92329 -14.74769 -14.42493 -14.19611 -13.91655 -13.72968 -13.55760 -13.44783 -13.27253 -12.96179 -12.88070 -12.71380 -12.30082 -12.28968 -12.05006 -11.78705 -11.68850 -11.43875 -11.08620 -11.04285 -10.93851 -10.87113 -10.71607 -10.68588 -10.35012 -10.32980 -10.18313 -10.03643 -9.89290 -9.70722 -9.50485 -8.83784 -8.50979 -8.31275 -6.65598 -5.74644 -3.17098 2.68509 3.40304 3.42480 3.46793 3.48321 3.68411 4.09408 4.15947 4.31966 4.52377 4.57383 4.74572 4.82603 4.89125 5.05691 5.11943 5.20821 5.25883 5.34285 5.40706 5.44495 5.48960 5.50892 5.54939 5.64876 5.68021 5.71897 5.80486 5.84736 5.89278 5.92020 6.11161 6.14810 6.22229 6.28801 6.43983 6.51811 6.66922 6.69886 6.84129 6.97172 7.03557 7.23465 7.25048 7.44585 7.73681 7.83005 8.18370 8.48262 8.84626 9.24220 9.87909 10.45179 11.33968 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.002480 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.230189 B =11287.385136 C =11614.413142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.085 0.915 4 C 0.106 3.894 5 N -0.645 5.645 6 C 0.725 3.275 7 O -0.585 6.585 8 N -0.738 5.738 9 C 0.169 3.831 10 C -0.138 4.138 11 C 0.149 3.851 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.173 3.827 22 C -0.146 4.146 23 C 0.142 3.858 24 C -0.072 4.072 25 C -0.132 4.132 26 C 0.092 3.908 27 O -0.568 6.568 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.388 0.612 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.058 0.942 39 H 0.254 0.746 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.048 0.952 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 22.933 16.287 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.103 0.897 4 C -0.018 4.018 5 N -0.384 5.384 6 C 0.428 3.572 7 O -0.462 6.462 8 N -0.392 5.392 9 C 0.065 3.935 10 C -0.178 4.178 11 C 0.022 3.978 12 N -0.316 5.316 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.047 3.953 22 C -0.186 4.186 23 C 0.018 3.982 24 C -0.073 4.073 25 C -0.189 4.189 26 C 0.013 3.987 27 O -0.373 6.373 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.975 21.353 16.288 26.929 hybrid contribution 0.640 0.949 -0.902 1.457 sum -1.335 22.302 15.386 27.127 Atomic orbital electron populations 1.21919 0.93915 1.02547 1.01778 1.22165 0.96806 0.98916 0.93585 0.89698 1.22452 1.00322 0.82668 0.96391 1.48055 1.68334 1.04005 1.18015 1.15415 0.78394 0.82198 0.81215 1.90939 1.58891 1.29284 1.67098 1.45526 1.68137 1.10236 1.15263 1.20913 0.96016 0.83456 0.93104 1.22335 0.96727 1.01200 0.97503 1.20830 0.89928 0.91183 0.95900 1.44168 1.05785 1.74371 1.07248 1.19181 1.21097 1.14895 0.83093 0.91611 1.25052 1.01693 0.95493 0.97468 1.70040 1.33120 1.18604 1.32749 0.86290 0.78605 0.76842 0.85018 1.21505 1.21779 1.20466 1.20807 0.92345 0.90210 0.91957 1.22567 0.96154 1.01169 0.98758 1.22088 0.95838 0.98140 0.82107 1.21558 0.95938 0.95451 0.94361 1.21845 0.96775 1.00845 0.99474 1.22216 0.95563 0.92838 0.88049 1.86522 1.67727 1.41334 1.41720 0.92093 0.92522 0.91887 0.91213 0.90526 0.77851 0.90107 0.91987 0.92721 0.96179 0.92395 0.93591 0.89281 0.96087 0.92868 0.92818 0.89590 0.91616 0.91898 0.92604 0.92095 0.93425 0.93391 0.77463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 7.95 37.16 0.30 -0.66 16 2 C -0.10 -0.64 3.30 -89.00 -0.29 -0.93 16 3 H 0.08 0.41 7.71 -51.93 -0.40 0.01 16 4 C 0.11 0.89 6.49 -2.19 -0.01 0.88 16 5 N -0.64 -8.12 3.31 -174.76 -0.58 -8.70 16 6 C 0.73 12.17 8.53 -86.92 -0.74 11.43 16 7 O -0.58 -12.52 16.27 5.29 0.09 -12.44 16 8 N -0.74 -11.32 5.05 -58.63 -0.30 -11.62 16 9 C 0.17 3.10 2.42 -67.89 -0.16 2.94 16 10 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 11 C 0.15 3.13 6.50 -3.71 -0.02 3.10 16 12 N -0.59 -15.10 3.01 -172.09 -0.52 -15.61 16 13 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 14 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 16 N -0.90 -26.76 11.18 55.49 0.62 -26.14 16 17 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.17 4.34 5.33 -3.56 -0.02 4.32 16 22 C -0.15 -3.06 5.65 -26.61 -0.15 -3.21 16 23 C 0.14 1.63 5.87 -2.41 -0.01 1.61 16 24 C -0.07 -0.59 0.83 -153.11 -0.13 -0.71 16 25 C -0.13 -1.17 7.11 37.16 0.26 -0.91 16 26 C 0.09 0.57 5.61 37.15 0.21 0.78 16 27 O -0.57 -4.14 12.80 -35.23 -0.45 -4.59 16 28 H 0.06 0.36 6.89 -51.92 -0.36 0.00 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.54 6.73 -51.93 -0.35 0.19 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.59 6.60 -51.93 -0.34 0.24 16 33 H 0.39 4.82 7.00 -40.82 -0.29 4.53 16 34 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.21 7.60 -51.93 -0.39 0.81 16 45 H 0.07 0.72 7.86 -51.93 -0.41 0.32 16 46 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 47 H 0.05 0.40 6.99 -51.93 -0.36 0.04 16 48 H 0.06 0.62 6.63 -51.93 -0.34 0.28 16 49 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 51 H 0.38 1.08 9.12 45.56 0.42 1.49 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -34.45 388.26 -9.60 -44.06 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.13 Total: 3.34 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.16 Total: 8.95 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.77 Total: -62.07 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.36 Total: -17.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.45 -9.60 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.442 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds