Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.30850 * 2 1 4 4 C 1.54798 * 110.61016 * 237.82040 * 2 1 3 5 5 N 1.48142 * 104.41846 * 265.17762 * 4 2 1 6 6 C 1.34775 * 127.83942 * 140.36889 * 5 4 2 7 7 O 1.21582 * 120.00706 * 179.68055 * 6 5 4 8 8 N 1.34778 * 119.99707 * 359.68427 * 6 5 4 9 9 C 1.46496 * 120.00273 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.46215 * 154.99748 * 9 8 6 11 11 C 1.53189 * 109.30964 * 181.37334 * 10 9 8 12 12 N 1.46932 * 108.89486 * 305.29189 * 11 10 9 13 13 C 1.36934 * 120.62713 * 233.67791 * 12 11 10 14 14 H 1.07999 * 120.00365 * 27.39524 * 13 12 11 15 15 C 1.38820 * 119.99352 * 207.39446 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26040 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26046 * 15 13 12 18 18 H 1.48505 * 109.47107 * 90.00031 * 17 15 13 19 19 H 1.48498 * 109.47190 * 209.99825 * 17 15 13 20 20 H 1.48496 * 109.47303 * 330.00267 * 17 15 13 21 21 C 1.47199 * 118.55133 * 53.54206 * 12 11 10 22 22 C 1.53044 * 109.44899 * 275.05938 * 9 8 6 23 23 C 1.48153 * 104.32558 * 320.11013 * 5 4 2 24 24 C 1.54289 * 110.34459 * 122.17565 * 2 1 3 25 25 C 1.52997 * 110.43021 * 0.05896 * 24 2 1 26 26 C 1.52993 * 110.34233 * 237.84651 * 24 2 1 27 27 O 1.42907 * 109.47224 * 183.00852 * 26 24 2 28 28 H 1.09007 * 109.47020 * 297.82573 * 1 2 3 29 29 H 1.08997 * 109.47303 * 57.82111 * 1 2 3 30 30 H 1.09002 * 109.47118 * 177.82975 * 1 2 3 31 31 H 1.09003 * 110.53839 * 146.43936 * 4 2 1 32 32 H 1.08998 * 110.46086 * 23.88156 * 4 2 1 33 33 H 0.97002 * 120.00140 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.45832 * 35.02232 * 9 8 6 35 35 H 1.08994 * 109.49759 * 61.42304 * 10 9 8 36 36 H 1.08999 * 109.52410 * 301.33915 * 10 9 8 37 37 H 1.09005 * 109.59042 * 65.15548 * 11 10 9 38 38 H 1.09001 * 109.58782 * 185.43429 * 11 10 9 39 39 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.53355 * 186.67380 * 21 12 11 41 41 H 1.09002 * 109.67913 * 66.37168 * 21 12 11 42 42 H 1.08997 * 109.49664 * 298.57053 * 22 9 8 43 43 H 1.09005 * 109.49458 * 58.66540 * 22 9 8 44 44 H 1.08995 * 110.40458 * 158.62962 * 23 5 4 45 45 H 1.09001 * 110.40156 * 281.06020 * 23 5 4 46 46 H 1.08998 * 109.47273 * 177.04841 * 25 24 2 47 47 H 1.09003 * 109.47368 * 297.04254 * 25 24 2 48 48 H 1.09002 * 109.47269 * 57.04120 * 25 24 2 49 49 H 1.09003 * 109.47172 * 303.00392 * 26 24 2 50 50 H 1.08995 * 109.47345 * 63.00721 * 26 24 2 51 51 H 0.96699 * 113.99990 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0749 -0.7717 -1.2263 5 7 2.3176 -2.1430 -0.7212 6 6 2.0833 -3.3103 -1.3528 7 8 2.3436 -4.3625 -0.8022 8 7 1.5604 -3.3111 -2.5951 9 6 1.3051 -4.5799 -3.2815 10 6 0.2000 -4.3834 -4.3219 11 6 -0.0879 -5.7196 -5.0135 12 7 1.1668 -6.2510 -5.5632 13 6 1.2563 -6.6029 -6.8835 14 1 0.6260 -6.1195 -7.6152 15 6 2.1574 -7.5811 -7.2814 16 7 2.6736 -8.4016 -6.3912 17 14 2.6371 -7.7327 -9.0805 18 1 3.8237 -6.8814 -9.3498 19 1 2.9636 -9.1484 -9.3881 20 1 1.5056 -7.2889 -9.9336 21 6 2.3240 -6.3933 -4.6646 22 6 2.5850 -5.0496 -3.9769 23 6 2.8824 -1.9401 0.6333 24 6 2.0664 -0.7704 1.2245 25 6 0.9077 -1.3037 2.0694 26 6 2.9671 0.1334 2.0686 27 8 3.5089 -0.6171 3.1574 28 1 -0.3633 0.4797 0.9089 29 1 -0.3634 0.5473 -0.8698 30 1 -0.3633 -1.0269 -0.0389 31 1 3.0056 -0.3252 -1.5764 32 1 1.3350 -0.7867 -2.0266 33 1 1.3523 -2.4717 -3.0343 34 1 0.9908 -5.3291 -2.5548 35 1 0.5237 -3.6525 -5.0629 36 1 -0.7045 -4.0263 -3.8295 37 1 -0.4976 -6.4247 -4.2902 38 1 -0.8044 -5.5664 -5.8206 39 1 3.3030 -9.0854 -6.6694 40 1 3.2010 -6.6841 -5.2430 41 1 2.1136 -7.1539 -3.9127 42 1 2.8862 -4.3124 -4.7211 43 1 3.3782 -5.1668 -3.2384 44 1 2.7524 -2.8378 1.2376 45 1 3.9373 -1.6734 0.5691 46 1 1.3029 -1.8887 2.8999 47 1 0.3265 -0.4675 2.4582 48 1 0.2683 -1.9348 1.4522 49 1 3.7798 0.5156 1.4509 50 1 2.3830 0.9675 2.4574 51 1 4.0915 -0.1062 3.7359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596275505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -80.981038 kcal Electronic energy + Delta-G solvation = -29175.952333 eV Core-core repulsion = 25302.734754 eV Total energy + Delta-G solvation = -3873.217579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.65971 -40.18677 -38.84739 -37.22114 -36.00279 -34.56609 -33.69591 -31.98161 -31.72450 -31.13651 -28.58215 -27.32103 -26.62798 -26.24084 -23.92406 -23.66675 -22.89924 -21.23190 -20.83941 -19.77377 -19.18372 -18.59120 -17.98571 -17.26797 -17.17746 -16.78872 -16.05858 -15.89075 -15.69548 -15.44099 -15.35523 -15.00146 -14.76119 -14.65214 -14.35561 -14.28035 -14.17832 -13.83620 -13.56014 -13.20345 -13.19327 -13.01969 -12.82734 -12.62168 -12.61016 -12.46264 -12.27811 -12.12749 -12.02906 -11.86703 -11.66414 -11.56969 -11.55038 -11.45012 -11.27940 -11.17820 -10.79496 -10.59312 -10.17947 -9.53211 -8.73424 -7.87297 -5.33392 1.47500 1.49002 1.53932 1.58447 2.12697 2.51688 2.97254 3.23199 3.29098 3.50523 3.64976 3.66759 3.86151 3.98756 4.07775 4.18567 4.23436 4.30847 4.32687 4.46031 4.53054 4.57309 4.61293 4.65454 4.67484 4.75427 4.78304 4.83186 4.84866 4.91737 4.95668 4.97201 5.03599 5.06451 5.10046 5.14495 5.21579 5.28669 5.30209 5.41163 5.44613 5.57102 5.58595 5.63561 5.68400 6.08594 6.37741 6.99499 7.01652 7.12156 7.57413 7.83126 8.37083 9.20188 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.002480 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.230189 B =11287.385136 C =11614.413142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.120 0.880 4 C 0.097 3.903 5 N -0.642 5.642 6 C 0.719 3.281 7 O -0.642 6.642 8 N -0.722 5.722 9 C 0.181 3.819 10 C -0.119 4.119 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.260 4.260 14 H 0.076 0.924 15 C -0.057 4.057 16 N -0.940 5.940 17 Si 0.971 3.029 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.263 1.263 21 C 0.183 3.817 22 C -0.129 4.129 23 C 0.137 3.863 24 C -0.068 4.068 25 C -0.128 4.128 26 C 0.093 3.907 27 O -0.594 6.594 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.408 0.592 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.249 0.751 40 H 0.056 0.944 41 H -0.013 1.013 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.040 0.960 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 27.422 15.644 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.138 0.862 4 C -0.025 4.025 5 N -0.379 5.379 6 C 0.421 3.579 7 O -0.524 6.524 8 N -0.377 5.377 9 C 0.076 3.924 10 C -0.158 4.158 11 C 0.016 3.984 12 N -0.333 5.333 13 C -0.390 4.390 14 H 0.094 0.906 15 C -0.252 4.252 16 N -0.586 5.586 17 Si 0.799 3.201 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.187 1.187 21 C 0.057 3.943 22 C -0.169 4.169 23 C 0.014 3.986 24 C -0.069 4.069 25 C -0.185 4.185 26 C 0.015 3.985 27 O -0.403 6.403 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.245 0.755 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.028 0.972 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.005 0.995 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.950 25.961 15.658 30.460 hybrid contribution 0.916 -0.444 -0.597 1.180 sum -2.034 25.517 15.061 29.700 Atomic orbital electron populations 1.21911 0.93718 1.01324 1.03083 1.22188 0.96853 0.99958 0.91421 0.86244 1.22841 1.01868 0.80106 0.97637 1.48047 1.67001 1.04571 1.18322 1.15613 0.78252 0.82657 0.81403 1.90901 1.61138 1.31930 1.68406 1.45082 1.67898 1.09901 1.14824 1.20526 0.94954 0.84250 0.92715 1.22124 0.97567 0.99055 0.97060 1.21042 0.88348 0.92722 0.96326 1.44412 1.07318 1.74649 1.06903 1.19597 1.20733 1.14321 0.84313 0.90594 1.25900 1.02156 0.95490 1.01630 1.70221 1.34045 1.19517 1.34854 0.85207 0.78512 0.76183 0.80194 1.21272 1.22516 1.18733 1.20494 0.91366 0.91614 0.90859 1.22305 0.97340 0.98958 0.98310 1.22209 0.96926 0.98130 0.81346 1.21571 0.95520 0.94599 0.95182 1.21791 0.96995 1.01048 0.98635 1.22267 0.95950 0.92437 0.87857 1.86486 1.68460 1.42825 1.42514 0.91026 0.91018 0.94377 0.89320 0.89238 0.75539 0.93030 0.90449 0.89115 0.97163 0.91093 0.94209 0.92597 0.99459 0.91976 0.94194 0.93394 0.91063 0.93885 0.90419 0.94124 0.91866 0.91048 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 7.95 71.98 0.57 -0.83 16 2 C -0.09 -0.82 3.30 -9.74 -0.03 -0.85 16 3 H 0.12 0.45 7.71 -2.39 -0.02 0.44 16 4 C 0.10 1.32 6.49 86.68 0.56 1.88 16 5 N -0.64 -15.64 3.31 -825.09 -2.73 -18.37 16 6 C 0.72 24.31 8.53 179.05 1.53 25.83 16 7 O -0.64 -28.98 16.27 -3.97 -0.06 -29.04 16 8 N -0.72 -21.29 5.05 -457.68 -2.31 -23.60 16 9 C 0.18 6.61 2.42 45.02 0.11 6.72 16 10 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 11 C 0.14 5.83 6.50 86.36 0.56 6.39 16 12 N -0.61 -31.41 3.01 -698.38 -2.10 -33.51 16 13 C -0.26 -14.38 9.59 84.04 0.81 -13.57 16 14 H 0.08 3.99 7.89 -2.91 -0.02 3.96 16 15 C -0.06 -3.25 4.92 84.86 0.42 -2.83 16 16 N -0.94 -58.02 11.18 21.65 0.24 -57.78 16 17 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 C 0.18 9.64 5.33 86.31 0.46 10.10 16 22 C -0.13 -5.51 5.65 30.67 0.17 -5.34 16 23 C 0.14 3.14 5.87 86.53 0.51 3.65 16 24 C -0.07 -0.97 0.83 -51.28 -0.04 -1.01 16 25 C -0.13 -2.16 7.11 71.98 0.51 -1.65 16 26 C 0.09 0.87 5.61 71.98 0.40 1.27 16 27 O -0.59 -7.75 12.80 -148.98 -1.91 -9.66 16 28 H 0.07 0.57 6.89 -2.38 -0.02 0.55 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 0.58 6.73 -2.39 -0.02 0.56 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.00 6.60 -2.39 -0.02 0.99 16 33 H 0.41 8.87 7.00 -92.71 -0.65 8.22 16 34 H 0.05 2.22 7.58 -2.38 -0.02 2.21 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 39 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 40 H 0.06 3.29 6.04 -2.39 -0.01 3.28 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 44 H 0.05 1.45 7.60 -2.39 -0.02 1.43 16 45 H 0.07 1.53 7.86 -2.39 -0.02 1.51 16 46 H 0.04 0.89 7.78 -2.39 -0.02 0.87 16 47 H 0.08 0.95 6.99 -2.39 -0.02 0.94 16 48 H 0.04 0.84 6.63 -2.39 -0.02 0.83 16 49 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 51 H 0.40 1.52 9.12 -74.06 -0.68 0.84 16 Total: -1.00 -80.37 388.26 -0.53 -80.90 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.40 Total: 17.39 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.71 Total: 26.15 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -6.90 Total: -133.26 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.97 Total: -38.70 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -80.37 -0.53 -80.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596275505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.081 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds