Wall clock time and date at job start Fri Apr 10 2020 18:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46844 * 2 1 4 4 C 1.52994 * 109.47347 * 120.00113 * 2 1 3 5 5 N 1.46898 * 109.46716 * 240.00332 * 2 1 3 6 6 C 1.47851 * 110.99754 * 181.88595 * 5 2 1 7 7 C 1.54911 * 104.79612 * 213.63329 * 6 5 2 8 8 C 1.55145 * 101.65101 * 37.07517 * 7 6 5 9 9 H 1.08997 * 110.70724 * 82.72583 * 8 7 6 10 10 N 1.46497 * 110.85438 * 205.89259 * 8 7 6 11 11 C 1.34776 * 119.99832 * 268.68653 * 10 8 7 12 12 O 1.21586 * 120.00105 * 359.97438 * 11 10 8 13 13 N 1.34781 * 119.99759 * 180.02562 * 11 10 8 14 14 C 1.47423 * 125.64947 * 0.02562 * 13 11 10 15 15 C 1.54908 * 104.83397 * 204.09364 * 14 13 11 16 16 C 1.55157 * 101.58343 * 322.99621 * 15 14 13 17 17 O 1.42895 * 110.72099 * 277.13454 * 16 15 14 18 18 C 1.50699 * 110.72103 * 153.86319 * 16 15 14 19 19 H 1.08004 * 119.99892 * 359.97438 * 18 16 15 20 20 C 1.37878 * 119.99937 * 180.02562 * 18 16 15 21 21 N 1.31511 * 120.00021 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99775 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47204 * 90.00162 * 22 20 18 24 24 H 1.48502 * 109.46844 * 209.99982 * 22 20 18 25 25 H 1.48500 * 109.47142 * 329.99545 * 22 20 18 26 26 C 1.47019 * 125.64592 * 179.71746 * 13 11 10 27 27 C 1.47445 * 111.00359 * 61.04427 * 5 2 1 28 28 H 1.08999 * 109.47022 * 59.99714 * 1 2 3 29 29 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46824 * 299.99873 * 1 2 3 31 31 H 1.08997 * 109.46929 * 53.87536 * 3 2 1 32 32 H 1.09007 * 109.46750 * 173.86714 * 3 2 1 33 33 H 1.08995 * 109.47196 * 293.86846 * 3 2 1 34 34 H 1.09005 * 109.46970 * 59.99990 * 4 2 1 35 35 H 1.08995 * 109.47379 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.47550 * 300.00091 * 4 2 1 37 37 H 1.08995 * 110.37285 * 332.46898 * 6 5 2 38 38 H 1.09006 * 110.36881 * 94.80922 * 6 5 2 39 39 H 1.08997 * 110.99161 * 278.97924 * 7 6 5 40 40 H 1.09000 * 110.98791 * 155.16393 * 7 6 5 41 41 H 0.97002 * 119.99809 * 88.68462 * 10 8 7 42 42 H 1.08997 * 110.37124 * 322.93652 * 14 13 11 43 43 H 1.09004 * 110.36148 * 85.25905 * 14 13 11 44 44 H 1.09005 * 111.00256 * 81.06566 * 15 14 13 45 45 H 1.08998 * 111.00503 * 204.87856 * 15 14 13 46 46 H 0.96697 * 114.00162 * 179.97438 * 17 16 15 47 47 H 0.97002 * 119.99896 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.88101 * 298.39124 * 26 13 11 49 49 H 1.09000 * 109.88842 * 59.55438 * 26 13 11 50 50 H 1.08990 * 109.89026 * 242.66276 * 27 5 2 51 51 H 1.09005 * 109.88491 * 3.69370 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 2.0196 -0.6924 -1.1995 6 6 3.4969 -0.7516 -1.2112 7 6 3.8848 -0.6553 -2.7078 8 6 2.8278 0.3470 -3.2416 9 1 3.1365 1.3737 -3.0452 10 7 2.5924 0.1437 -4.6732 11 6 3.3143 0.8324 -5.5793 12 8 4.1605 1.6229 -5.2086 13 7 3.0974 0.6457 -6.8964 14 6 2.1066 -0.2756 -7.4819 15 6 2.6464 -0.5898 -8.8995 16 6 3.2458 0.7796 -9.3151 17 8 2.2283 1.6425 -9.8270 18 6 4.3480 0.5944 -10.3260 19 1 4.6157 -0.3981 -10.6574 20 6 5.0155 1.6919 -10.8270 21 7 4.6905 2.9003 -10.4224 22 14 6.3822 1.4623 -12.0795 23 1 5.8094 1.4963 -13.4491 24 1 7.3774 2.5545 -11.9319 25 1 7.0464 0.1536 -11.8530 26 6 3.8054 1.3318 -7.9870 27 6 1.5674 -0.0095 -2.4255 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5899 1.9870 0.8301 32 1 3.1245 1.4445 0.1098 33 1 1.7691 1.9237 -0.9397 34 1 1.6767 -1.7489 1.2491 35 1 3.1300 -0.7216 1.2489 36 1 1.6768 -0.2075 2.1392 37 1 3.9147 0.0881 -0.6560 38 1 3.8421 -1.6958 -0.7897 39 1 3.7883 -1.6234 -3.1993 40 1 4.8933 -0.2586 -2.8250 41 1 1.9171 -0.4867 -4.9689 42 1 2.0412 -1.1885 -6.8899 43 1 1.1313 0.2069 -7.5456 44 1 3.4180 -1.3588 -8.8622 45 1 1.8379 -0.8826 -9.5693 46 1 2.5510 2.5119 -10.1008 47 1 5.1599 3.6725 -10.7752 48 1 3.6286 2.4057 -7.9259 49 1 4.8738 1.1258 -7.9229 50 1 0.9261 -0.6735 -3.0048 51 1 1.0226 0.8980 -2.1650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596679767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:24 Heat of formation + Delta-G solvation = -90.035868 kcal Electronic energy + Delta-G solvation = -29147.128627 eV Core-core repulsion = 25273.518401 eV Total energy + Delta-G solvation = -3873.610226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57466 -40.69034 -39.10907 -36.69904 -36.10182 -34.18749 -34.16095 -31.70995 -30.47627 -29.80655 -29.20713 -28.23968 -27.66016 -26.70943 -24.31808 -23.08139 -22.06353 -21.40615 -21.11516 -19.65806 -19.27813 -18.90621 -17.65387 -17.35034 -17.10550 -16.72659 -16.18178 -16.05054 -15.41539 -15.32836 -15.12668 -14.93092 -14.76288 -14.68221 -14.39395 -13.91327 -13.77750 -13.52256 -13.49223 -13.35811 -12.98405 -12.87868 -12.85551 -12.76382 -12.59476 -12.53723 -12.46473 -12.30505 -12.27849 -12.17002 -12.09107 -11.87911 -11.81441 -11.45009 -11.32581 -11.20053 -10.64415 -10.30836 -10.22562 -9.42553 -9.26063 -8.27715 -6.43468 1.40603 1.42866 1.52460 1.61530 2.10506 2.37078 2.86172 2.98838 3.09931 3.54088 3.68858 3.80936 3.94197 3.98862 4.05992 4.09606 4.17500 4.25730 4.29052 4.32195 4.38709 4.56890 4.59702 4.66029 4.69958 4.70773 4.84345 4.84419 4.91841 4.97573 4.99823 5.02086 5.02777 5.07070 5.08437 5.13226 5.23671 5.26708 5.36771 5.37932 5.45685 5.48392 5.56009 5.75287 5.96571 6.00756 6.14180 6.18861 6.63383 7.03876 7.28581 7.37799 7.54391 8.78549 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.002490 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.962858 B =11240.493764 C =11496.957107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 C -0.184 4.184 4 C -0.135 4.135 5 N -0.511 5.511 6 C 0.047 3.953 7 C -0.138 4.138 8 C 0.143 3.857 9 H 0.067 0.933 10 N -0.718 5.718 11 C 0.712 3.288 12 O -0.644 6.644 13 N -0.634 5.634 14 C 0.108 3.892 15 C -0.111 4.111 16 C 0.233 3.767 17 O -0.589 6.589 18 C -0.556 4.556 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.964 3.036 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.138 3.862 27 C 0.044 3.956 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.410 0.590 42 H 0.102 0.898 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.378 0.622 47 H 0.271 0.729 48 H 0.024 0.976 49 H 0.029 0.971 50 H 0.093 0.907 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 -9.201 20.562 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 C -0.243 4.243 4 C -0.192 4.192 5 N -0.236 5.236 6 C -0.080 4.080 7 C -0.178 4.178 8 C 0.036 3.964 9 H 0.085 0.915 10 N -0.374 5.374 11 C 0.414 3.586 12 O -0.527 6.527 13 N -0.370 5.370 14 C -0.014 4.014 15 C -0.148 4.148 16 C 0.193 3.807 17 O -0.398 6.398 18 C -0.594 4.594 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.558 5.558 22 Si 0.790 3.210 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.192 1.192 26 C 0.014 3.986 27 C -0.085 4.085 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.247 0.753 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.229 0.771 47 H 0.080 0.920 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.111 0.889 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.742 -9.465 21.050 24.680 hybrid contribution 1.565 1.737 -1.227 2.641 sum -7.177 -7.727 19.824 22.454 Atomic orbital electron populations 1.21873 0.92771 1.02629 1.02132 1.21362 0.96216 0.91485 0.90846 1.22558 1.01552 0.97727 1.02416 1.21827 1.00978 1.00815 0.95596 1.63971 1.09184 1.49315 1.01125 1.23022 0.87787 1.02330 0.94901 1.23082 0.98493 0.99762 0.96458 1.22041 0.96626 0.99159 0.78572 0.91513 1.44861 1.41740 1.46033 1.04792 1.15729 0.81614 0.81013 0.80272 1.90842 1.39543 1.42491 1.79823 1.47869 1.40824 1.45072 1.03281 1.22408 0.91447 0.92989 0.94552 1.22726 1.01013 0.96013 0.95097 1.19711 0.85797 0.87449 0.87750 1.86055 1.38450 1.30455 1.84870 1.21861 1.18546 0.93942 1.25064 0.91305 1.25843 0.99044 0.94885 0.97914 1.69686 1.43160 0.98695 1.44247 0.85451 0.78540 0.77910 0.79131 1.19636 1.21182 1.19180 1.22401 0.94542 0.94607 0.87029 1.23021 0.95284 0.98973 0.91205 0.92928 0.91724 0.91099 0.90793 0.92684 0.93285 0.91769 0.92710 0.91113 0.92649 0.88819 0.89987 0.92287 0.75251 0.87958 0.91060 0.89855 0.89055 0.77133 0.91979 0.95738 0.95222 0.88891 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.36 71.98 0.60 -1.09 16 2 C 0.09 1.28 0.67 3.53 0.00 1.28 16 3 C -0.18 -2.81 7.88 71.98 0.57 -2.25 16 4 C -0.13 -1.59 8.34 71.98 0.60 -0.99 16 5 N -0.51 -8.58 5.00 -836.12 -4.18 -12.76 16 6 C 0.05 0.83 5.14 86.77 0.45 1.28 16 7 C -0.14 -3.16 6.77 31.98 0.22 -2.94 16 8 C 0.14 3.58 3.31 46.18 0.15 3.73 16 9 H 0.07 2.06 7.55 -2.39 -0.02 2.05 16 10 N -0.72 -20.32 5.14 -452.17 -2.33 -22.65 16 11 C 0.71 28.77 8.49 179.05 1.52 30.29 16 12 O -0.64 -32.14 16.31 -3.99 -0.07 -32.20 16 13 N -0.63 -26.12 3.33 -829.74 -2.76 -28.88 16 14 C 0.11 3.46 6.56 86.86 0.57 4.03 16 15 C -0.11 -4.16 6.23 31.99 0.20 -3.96 16 16 C 0.23 11.37 0.86 -10.35 -0.01 11.36 16 17 O -0.59 -30.16 13.08 -148.98 -1.95 -32.11 16 18 C -0.56 -29.26 8.11 25.60 0.21 -29.05 16 19 H 0.07 3.50 7.76 -2.91 -0.02 3.48 16 20 C 0.02 1.25 5.28 84.66 0.45 1.70 16 21 N -0.92 -50.52 10.97 21.45 0.24 -50.29 16 22 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 26 C 0.14 7.01 5.53 86.73 0.48 7.49 16 27 C 0.04 0.80 5.25 86.65 0.46 1.26 16 28 H 0.05 0.70 6.56 -2.39 -0.02 0.68 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.90 6.31 -2.38 -0.02 0.88 16 33 H 0.05 0.87 6.11 -2.39 -0.01 0.86 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.05 0.67 6.97 -2.39 -0.02 0.65 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.98 5.48 -2.39 -0.01 0.97 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.41 9.00 6.85 -92.71 -0.63 8.37 16 42 H 0.10 2.37 7.30 -2.39 -0.02 2.35 16 43 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.08 3.00 8.02 -2.38 -0.02 2.98 16 45 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 46 H 0.38 20.44 6.99 -74.06 -0.52 19.92 16 47 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.02 1.38 8.07 -2.39 -0.02 1.36 16 49 H 0.03 1.66 7.81 -2.39 -0.02 1.64 16 50 H 0.09 1.52 7.72 -2.39 -0.02 1.51 16 51 H 0.07 1.30 4.79 -2.38 -0.01 1.29 16 Total: -1.00 -66.61 385.49 -2.77 -69.39 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -0.22 Total: 43.03 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 6.46 Total: 22.14 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -9.03 Total: -114.57 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -2.01 Total: -64.32 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -66.61 -2.77 -69.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.648 kcal (2) G-P(sol) polarization free energy of solvation -66.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds