Wall clock time and date at job start Fri Apr 10 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46815 * 2 1 4 4 C 1.53007 * 109.46447 * 240.00551 * 2 1 3 5 5 N 1.46895 * 109.47359 * 120.00448 * 2 1 3 6 6 C 1.48533 * 110.99883 * 172.61461 * 5 2 1 7 7 C 1.54932 * 103.22876 * 200.28015 * 6 5 2 8 8 C 1.54599 * 102.92212 * 37.41091 * 7 6 5 9 9 H 1.08999 * 110.39134 * 219.08415 * 8 7 6 10 10 N 1.46498 * 110.30723 * 96.96428 * 8 7 6 11 11 C 1.34771 * 120.00382 * 89.27984 * 10 8 7 12 12 O 1.21589 * 119.99892 * 0.02562 * 11 10 8 13 13 N 1.34784 * 120.00342 * 179.97438 * 11 10 8 14 14 C 1.47022 * 125.64607 * 0.03277 * 13 11 10 15 15 C 1.54321 * 107.26934 * 178.91820 * 14 13 11 16 16 C 1.55153 * 102.94252 * 337.80621 * 15 14 13 17 17 O 1.42901 * 111.00347 * 277.39141 * 16 15 14 18 18 C 1.50696 * 111.00354 * 153.57919 * 16 15 14 19 19 H 1.07996 * 120.00338 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99663 * 180.27317 * 18 16 15 21 21 N 1.31511 * 120.00236 * 359.72394 * 20 18 16 22 22 Si 1.86804 * 119.99851 * 179.72346 * 20 18 16 23 23 H 1.48504 * 109.47009 * 59.99903 * 22 20 18 24 24 H 1.48494 * 109.47395 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47197 * 300.00110 * 22 20 18 26 26 C 1.47425 * 125.64875 * 180.02562 * 13 11 10 27 27 C 1.47903 * 111.00178 * 55.21711 * 5 2 1 28 28 H 1.09008 * 109.46292 * 299.99248 * 1 2 3 29 29 H 1.08994 * 109.47801 * 59.99558 * 1 2 3 30 30 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46908 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47425 * 300.00256 * 3 2 1 33 33 H 1.08997 * 109.47343 * 60.00599 * 3 2 1 34 34 H 1.09002 * 109.46986 * 292.82827 * 4 2 1 35 35 H 1.08994 * 109.47436 * 52.83292 * 4 2 1 36 36 H 1.09002 * 109.46519 * 172.83353 * 4 2 1 37 37 H 1.09003 * 110.66750 * 318.71581 * 6 5 2 38 38 H 1.09005 * 110.66925 * 81.83931 * 6 5 2 39 39 H 1.09006 * 110.72308 * 279.05404 * 7 6 5 40 40 H 1.08999 * 110.72636 * 155.77528 * 7 6 5 41 41 H 0.97004 * 119.99987 * 269.28392 * 10 8 7 42 42 H 1.08997 * 109.88316 * 59.49429 * 14 13 11 43 43 H 1.09002 * 109.87793 * 298.33419 * 14 13 11 44 44 H 1.09000 * 110.71484 * 219.44273 * 15 14 13 45 45 H 1.08997 * 110.86892 * 96.24126 * 15 14 13 46 46 H 0.96698 * 114.00289 * 176.81909 * 17 16 15 47 47 H 0.97002 * 119.99733 * 179.97438 * 21 20 18 48 48 H 1.08995 * 110.36620 * 85.30900 * 26 13 11 49 49 H 1.09004 * 110.36358 * 322.98772 * 26 13 11 50 50 H 1.08997 * 109.91662 * 26.49257 * 27 5 2 51 51 H 1.08998 * 110.08498 * 265.28655 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0198 -0.6926 1.1993 6 6 3.4937 -0.8686 1.1477 7 6 3.7485 -2.0208 2.1516 8 6 2.5350 -2.9515 1.9250 9 1 2.1837 -3.3556 2.8744 10 7 2.8924 -4.0396 1.0115 11 6 3.4021 -5.1883 1.4983 12 8 3.5648 -5.3218 2.6959 13 7 3.7304 -6.1896 0.6579 14 6 3.5861 -6.1624 -0.8050 15 6 4.1123 -7.5100 -1.3423 16 6 5.0466 -7.9973 -0.2036 17 8 6.3372 -7.3924 -0.3058 18 6 5.1563 -9.5002 -0.2008 19 1 4.6188 -10.0823 -0.9347 20 6 5.9388 -10.1325 0.7420 21 7 6.5938 -9.4238 1.6354 22 14 6.0687 -11.9960 0.7503 23 1 6.6246 -12.4592 -0.5466 24 1 6.9640 -12.4250 1.8546 25 1 4.7204 -12.5854 0.9496 26 6 4.2938 -7.4933 1.0533 27 6 1.4538 -2.0559 1.2924 28 1 -0.3632 0.5138 0.8902 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.7850 -1.7792 -1.1876 35 1 1.5757 -0.2867 -2.1347 36 1 3.1224 -0.6115 -1.3158 37 1 3.8122 -1.1544 0.1452 38 1 4.0013 0.0410 1.4690 39 1 3.7607 -1.6453 3.1749 40 1 4.6796 -2.5371 1.9181 41 1 2.7623 -3.9333 0.0561 42 1 4.1730 -5.3431 -1.2202 43 1 2.5362 -6.0414 -1.0717 44 1 4.6731 -7.3644 -2.2656 45 1 3.2935 -8.2127 -1.4968 46 1 6.9404 -7.6289 0.4120 47 1 7.1441 -9.8687 2.2988 48 1 3.4959 -8.1859 1.3210 49 1 4.9861 -7.3705 1.8862 50 1 1.2035 -2.4227 0.2970 51 1 0.5630 -2.0493 1.9204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596679768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:28 Heat of formation + Delta-G solvation = -66.417089 kcal Electronic energy + Delta-G solvation = -29486.386463 eV Core-core repulsion = 25613.800424 eV Total energy + Delta-G solvation = -3872.586039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.44839 -39.31786 -37.41063 -35.64973 -34.23688 -32.86169 -32.14856 -30.14873 -29.60474 -28.50798 -27.73175 -27.65882 -26.91182 -24.93071 -22.71731 -22.42557 -20.70157 -19.61626 -19.56242 -18.86930 -17.61204 -17.07898 -16.64212 -16.11405 -15.27879 -15.13104 -14.91909 -14.57055 -14.51071 -14.36183 -14.04724 -13.79958 -13.43959 -13.04495 -12.94652 -12.81831 -12.60485 -12.35540 -12.17106 -12.07767 -11.95773 -11.79018 -11.64056 -11.54854 -11.44341 -11.21029 -11.19702 -11.02834 -10.98317 -10.82047 -10.71460 -10.60345 -10.48802 -10.18248 -9.61762 -9.40228 -8.83987 -8.67563 -8.55538 -8.35777 -7.68804 -6.28208 -4.37521 3.08211 3.22631 3.28158 3.29832 3.71283 3.75569 4.25658 4.41936 4.45030 4.48730 4.64528 4.83081 4.85140 4.98806 5.02461 5.12776 5.25756 5.29993 5.37283 5.39037 5.41097 5.47349 5.56348 5.58218 5.62803 5.64780 5.75816 5.76911 5.83600 5.84904 5.93782 5.99446 6.03504 6.07498 6.13803 6.17391 6.49907 6.59069 6.69935 6.85493 6.87193 6.91340 6.96486 7.22181 7.32206 7.62762 7.75057 8.02089 8.53202 8.66013 9.13979 9.31853 9.46139 10.79278 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.002682 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.846508 B =10436.846018 C =10730.470495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 C -0.134 4.134 4 C -0.185 4.185 5 N -0.502 5.502 6 C 0.028 3.972 7 C -0.134 4.134 8 C 0.155 3.845 9 H 0.098 0.902 10 N -0.745 5.745 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.627 5.627 14 C 0.107 3.893 15 C -0.116 4.116 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.111 3.889 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.389 0.611 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.385 0.615 47 H 0.272 0.728 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 18.172 -4.887 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.001 3.999 3 C -0.192 4.192 4 C -0.243 4.243 5 N -0.227 5.227 6 C -0.099 4.099 7 C -0.173 4.173 8 C 0.048 3.952 9 H 0.116 0.884 10 N -0.402 5.402 11 C 0.419 3.581 12 O -0.474 6.474 13 N -0.364 5.364 14 C -0.017 4.017 15 C -0.154 4.154 16 C 0.209 3.791 17 O -0.394 6.394 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.011 4.011 27 C -0.101 4.101 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.223 0.777 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.237 0.763 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.075 0.925 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.230 18.681 -3.867 21.647 hybrid contribution 0.484 -1.666 -0.665 1.858 sum -9.745 17.015 -4.532 20.125 Atomic orbital electron populations 1.21904 0.93643 1.02142 1.02140 1.21222 0.95491 0.94811 0.88347 1.21796 1.01047 0.94438 1.01931 1.22543 1.01955 1.01098 0.98727 1.65073 1.05614 1.15717 1.36287 1.23361 0.88595 0.99025 0.98903 1.22945 0.98921 0.95552 0.99883 1.21515 0.93644 0.86063 0.93944 0.88427 1.45297 1.70363 1.14979 1.09535 1.15530 0.78454 0.79344 0.84807 1.90886 1.61398 1.81600 1.13499 1.47914 1.66024 1.16295 1.06168 1.21900 0.98601 0.99790 0.81399 1.22591 0.99154 0.94097 0.99582 1.19595 0.80910 0.90769 0.87833 1.86062 1.25433 1.73833 1.54074 1.21443 1.29769 0.90831 1.15599 0.91576 1.25077 0.94448 0.99303 0.94371 1.69567 1.30045 1.36230 1.17452 0.86446 0.78201 0.84373 0.77781 1.20007 1.21062 1.20024 1.23165 0.96917 0.79415 1.01561 1.23203 0.98000 0.88335 1.00568 0.91760 0.92279 0.92523 0.92646 0.92405 0.91818 0.92279 0.91929 0.91891 0.92899 0.90109 0.90135 0.90365 0.77712 0.92813 0.93318 0.90820 0.90493 0.76275 0.91827 0.92500 0.90102 0.92526 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.27 37.16 0.31 -0.73 16 2 C 0.09 0.74 0.69 -131.60 -0.09 0.65 16 3 C -0.13 -0.99 8.48 37.16 0.32 -0.67 16 4 C -0.18 -1.47 7.59 37.16 0.28 -1.19 16 5 N -0.50 -4.84 5.09 -214.85 -1.09 -5.93 16 6 C 0.03 0.29 5.48 -1.90 -0.01 0.28 16 7 C -0.13 -1.65 6.78 -24.87 -0.17 -1.82 16 8 C 0.15 2.02 3.34 -66.57 -0.22 1.79 16 9 H 0.10 1.46 7.56 -51.93 -0.39 1.07 16 10 N -0.75 -11.06 5.02 -57.35 -0.29 -11.35 16 11 C 0.72 14.43 8.49 -86.92 -0.74 13.70 16 12 O -0.60 -14.31 16.25 5.29 0.09 -14.22 16 13 N -0.63 -12.92 3.33 -176.23 -0.59 -13.50 16 14 C 0.11 1.84 6.15 -3.07 -0.02 1.82 16 15 C -0.12 -2.27 6.13 -24.90 -0.15 -2.43 16 16 C 0.25 6.02 0.88 -89.62 -0.08 5.94 16 17 O -0.58 -14.99 13.16 -35.23 -0.46 -15.45 16 18 C -0.54 -13.92 8.25 -34.44 -0.28 -14.20 16 19 H 0.07 1.66 7.76 -52.49 -0.41 1.26 16 20 C 0.07 1.85 5.31 -17.82 -0.09 1.76 16 21 N -0.89 -23.90 10.73 55.43 0.59 -23.30 16 22 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.11 2.69 5.62 -2.52 -0.01 2.68 16 27 C 0.03 0.28 4.88 -2.75 -0.01 0.26 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 6.77 -51.93 -0.35 0.08 16 31 H 0.05 0.42 7.16 -51.93 -0.37 0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 6.06 -51.93 -0.31 0.18 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 6.36 -51.93 -0.33 0.19 16 37 H 0.05 0.54 5.55 -51.93 -0.29 0.25 16 38 H 0.08 0.76 7.72 -51.93 -0.40 0.36 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 41 H 0.39 4.97 7.32 -40.82 -0.30 4.67 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 46 H 0.39 10.28 7.02 45.56 0.32 10.60 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 49 H 0.08 2.21 7.63 -51.93 -0.40 1.81 16 50 H 0.06 0.55 4.77 -51.93 -0.25 0.30 16 51 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -29.35 386.27 -10.03 -39.37 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -8.09 Total: 15.44 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.98 Total: 7.84 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -1.37 Total: -54.09 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.38 Total: -29.67 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.35 -10.03 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.043 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds