Wall clock time and date at job start Fri Apr 10 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46815 * 2 1 4 4 C 1.53007 * 109.46447 * 240.00551 * 2 1 3 5 5 N 1.46895 * 109.47359 * 120.00448 * 2 1 3 6 6 C 1.48533 * 110.99883 * 172.61461 * 5 2 1 7 7 C 1.54932 * 103.22876 * 200.28015 * 6 5 2 8 8 C 1.54599 * 102.92212 * 37.41091 * 7 6 5 9 9 H 1.08999 * 110.39134 * 219.08415 * 8 7 6 10 10 N 1.46498 * 110.30723 * 96.96428 * 8 7 6 11 11 C 1.34771 * 120.00382 * 89.27984 * 10 8 7 12 12 O 1.21589 * 119.99892 * 0.02562 * 11 10 8 13 13 N 1.34784 * 120.00342 * 179.97438 * 11 10 8 14 14 C 1.47022 * 125.64607 * 0.03277 * 13 11 10 15 15 C 1.54321 * 107.26934 * 178.91820 * 14 13 11 16 16 C 1.55153 * 102.94252 * 337.80621 * 15 14 13 17 17 O 1.42901 * 111.00347 * 277.39141 * 16 15 14 18 18 C 1.50696 * 111.00354 * 153.57919 * 16 15 14 19 19 H 1.07996 * 120.00338 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99663 * 180.27317 * 18 16 15 21 21 N 1.31511 * 120.00236 * 359.72394 * 20 18 16 22 22 Si 1.86804 * 119.99851 * 179.72346 * 20 18 16 23 23 H 1.48504 * 109.47009 * 59.99903 * 22 20 18 24 24 H 1.48494 * 109.47395 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47197 * 300.00110 * 22 20 18 26 26 C 1.47425 * 125.64875 * 180.02562 * 13 11 10 27 27 C 1.47903 * 111.00178 * 55.21711 * 5 2 1 28 28 H 1.09008 * 109.46292 * 299.99248 * 1 2 3 29 29 H 1.08994 * 109.47801 * 59.99558 * 1 2 3 30 30 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46908 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47425 * 300.00256 * 3 2 1 33 33 H 1.08997 * 109.47343 * 60.00599 * 3 2 1 34 34 H 1.09002 * 109.46986 * 292.82827 * 4 2 1 35 35 H 1.08994 * 109.47436 * 52.83292 * 4 2 1 36 36 H 1.09002 * 109.46519 * 172.83353 * 4 2 1 37 37 H 1.09003 * 110.66750 * 318.71581 * 6 5 2 38 38 H 1.09005 * 110.66925 * 81.83931 * 6 5 2 39 39 H 1.09006 * 110.72308 * 279.05404 * 7 6 5 40 40 H 1.08999 * 110.72636 * 155.77528 * 7 6 5 41 41 H 0.97004 * 119.99987 * 269.28392 * 10 8 7 42 42 H 1.08997 * 109.88316 * 59.49429 * 14 13 11 43 43 H 1.09002 * 109.87793 * 298.33419 * 14 13 11 44 44 H 1.09000 * 110.71484 * 219.44273 * 15 14 13 45 45 H 1.08997 * 110.86892 * 96.24126 * 15 14 13 46 46 H 0.96698 * 114.00289 * 176.81909 * 17 16 15 47 47 H 0.97002 * 119.99733 * 179.97438 * 21 20 18 48 48 H 1.08995 * 110.36620 * 85.30900 * 26 13 11 49 49 H 1.09004 * 110.36358 * 322.98772 * 26 13 11 50 50 H 1.08997 * 109.91662 * 26.49257 * 27 5 2 51 51 H 1.08998 * 110.08498 * 265.28655 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0198 -0.6926 1.1993 6 6 3.4937 -0.8686 1.1477 7 6 3.7485 -2.0208 2.1516 8 6 2.5350 -2.9515 1.9250 9 1 2.1837 -3.3556 2.8744 10 7 2.8924 -4.0396 1.0115 11 6 3.4021 -5.1883 1.4983 12 8 3.5648 -5.3218 2.6959 13 7 3.7304 -6.1896 0.6579 14 6 3.5861 -6.1624 -0.8050 15 6 4.1123 -7.5100 -1.3423 16 6 5.0466 -7.9973 -0.2036 17 8 6.3372 -7.3924 -0.3058 18 6 5.1563 -9.5002 -0.2008 19 1 4.6188 -10.0823 -0.9347 20 6 5.9388 -10.1325 0.7420 21 7 6.5938 -9.4238 1.6354 22 14 6.0687 -11.9960 0.7503 23 1 6.6246 -12.4592 -0.5466 24 1 6.9640 -12.4250 1.8546 25 1 4.7204 -12.5854 0.9496 26 6 4.2938 -7.4933 1.0533 27 6 1.4538 -2.0559 1.2924 28 1 -0.3632 0.5138 0.8902 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.7850 -1.7792 -1.1876 35 1 1.5757 -0.2867 -2.1347 36 1 3.1224 -0.6115 -1.3158 37 1 3.8122 -1.1544 0.1452 38 1 4.0013 0.0410 1.4690 39 1 3.7607 -1.6453 3.1749 40 1 4.6796 -2.5371 1.9181 41 1 2.7623 -3.9333 0.0561 42 1 4.1730 -5.3431 -1.2202 43 1 2.5362 -6.0414 -1.0717 44 1 4.6731 -7.3644 -2.2656 45 1 3.2935 -8.2127 -1.4968 46 1 6.9404 -7.6289 0.4120 47 1 7.1441 -9.8687 2.2988 48 1 3.4959 -8.1859 1.3210 49 1 4.9861 -7.3705 1.8862 50 1 1.2035 -2.4227 0.2970 51 1 0.5630 -2.0493 1.9204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596679768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:27 Heat of formation + Delta-G solvation = -88.255429 kcal Electronic energy + Delta-G solvation = -29487.333444 eV Core-core repulsion = 25613.800424 eV Total energy + Delta-G solvation = -3873.533020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59880 -40.61185 -39.05370 -36.71841 -36.06099 -34.16117 -34.05950 -31.75254 -30.42185 -29.77290 -29.21161 -28.26079 -27.68765 -26.74341 -24.29793 -23.27012 -21.86880 -21.41360 -20.94641 -19.62057 -19.28945 -18.85292 -17.71756 -17.06382 -17.02641 -16.71170 -16.36461 -16.14898 -15.51595 -15.27801 -15.00011 -14.95858 -14.73045 -14.67872 -14.60687 -13.77578 -13.71383 -13.50170 -13.44931 -13.29972 -12.96121 -12.83934 -12.82096 -12.75854 -12.61524 -12.53093 -12.31547 -12.30036 -12.24915 -12.10177 -12.08538 -11.90514 -11.79633 -11.44655 -11.32736 -11.20996 -10.64136 -10.34413 -10.19378 -9.35378 -9.29957 -8.25319 -6.42041 1.43452 1.44165 1.52453 1.64619 2.14144 2.38254 2.89510 3.00935 3.15342 3.51776 3.67475 3.80007 3.99503 4.02154 4.08162 4.11382 4.17750 4.26657 4.29221 4.32780 4.39211 4.56926 4.61060 4.68438 4.73944 4.74971 4.85394 4.90755 4.92431 4.98929 5.00741 5.03103 5.04394 5.07404 5.09165 5.10294 5.27212 5.29045 5.33580 5.38172 5.44755 5.47917 5.55341 5.76715 5.93662 6.02962 6.13758 6.19457 6.64778 7.05128 7.30157 7.38764 7.56895 8.80294 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.002682 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.846508 B =10436.846018 C =10730.470495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 C -0.132 4.132 4 C -0.183 4.183 5 N -0.506 5.506 6 C 0.039 3.961 7 C -0.133 4.133 8 C 0.150 3.850 9 H 0.074 0.926 10 N -0.721 5.721 11 C 0.712 3.288 12 O -0.642 6.642 13 N -0.633 5.633 14 C 0.109 3.891 15 C -0.110 4.110 16 C 0.233 3.767 17 O -0.590 6.590 18 C -0.556 4.556 19 H 0.071 0.929 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.966 3.034 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.270 1.270 26 C 0.126 3.874 27 C 0.039 3.961 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.404 0.596 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.376 0.624 47 H 0.270 0.730 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.069 0.931 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.669 19.362 -7.139 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 C -0.190 4.190 4 C -0.242 4.242 5 N -0.230 5.230 6 C -0.089 4.089 7 C -0.172 4.172 8 C 0.045 3.955 9 H 0.093 0.907 10 N -0.378 5.378 11 C 0.414 3.586 12 O -0.525 6.525 13 N -0.369 5.369 14 C -0.013 4.013 15 C -0.148 4.148 16 C 0.192 3.808 17 O -0.399 6.399 18 C -0.594 4.594 19 H 0.089 0.911 20 C -0.176 4.176 21 N -0.558 5.558 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.195 1.195 26 C 0.002 3.998 27 C -0.089 4.089 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.241 0.759 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.226 0.774 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.907 19.920 -6.184 24.017 hybrid contribution 0.989 -1.982 0.051 2.215 sum -10.918 17.939 -6.133 21.877 Atomic orbital electron populations 1.21893 0.92870 1.02205 1.02653 1.21339 0.96086 0.95028 0.87690 1.21784 1.00860 0.93941 1.02417 1.22525 1.01745 1.00888 0.99001 1.65110 1.05100 1.15216 1.37609 1.23273 0.89173 0.98262 0.98172 1.22873 0.97408 0.96186 1.00755 1.21655 0.95009 0.85794 0.93092 0.90727 1.45086 1.68630 1.13498 1.10556 1.15739 0.78463 0.80324 0.84120 1.90850 1.63279 1.82621 1.15722 1.47846 1.65970 1.15283 1.07801 1.22088 1.01331 0.99041 0.78879 1.22591 0.98489 0.95433 0.98295 1.19855 0.80801 0.90371 0.89768 1.86051 1.26135 1.74054 1.53620 1.21806 1.29802 0.92106 1.15662 0.91095 1.25856 0.94290 1.03405 0.94093 1.69692 1.30561 1.37629 1.17916 0.85490 0.78182 0.79490 0.77765 1.19321 1.21213 1.19487 1.22702 0.95623 0.81121 1.00369 1.23100 0.96859 0.87967 1.00988 0.92126 0.90960 0.92664 0.92934 0.91082 0.92209 0.92599 0.90735 0.92327 0.92554 0.89203 0.90178 0.92785 0.75949 0.91175 0.89217 0.89724 0.89181 0.77372 0.92062 0.94003 0.94459 0.91315 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.27 71.98 0.60 -1.04 16 2 C 0.09 1.19 0.69 3.53 0.00 1.19 16 3 C -0.13 -1.60 8.48 71.98 0.61 -0.99 16 4 C -0.18 -2.34 7.59 71.98 0.55 -1.79 16 5 N -0.51 -8.67 5.09 -833.66 -4.24 -12.92 16 6 C 0.04 0.72 5.48 86.65 0.47 1.19 16 7 C -0.13 -3.27 6.78 31.80 0.22 -3.05 16 8 C 0.15 3.84 3.34 45.87 0.15 3.99 16 9 H 0.07 2.29 7.56 -2.39 -0.02 2.27 16 10 N -0.72 -20.68 5.02 -453.61 -2.28 -22.95 16 11 C 0.71 28.89 8.49 179.05 1.52 30.41 16 12 O -0.64 -32.16 16.25 -4.00 -0.06 -32.22 16 13 N -0.63 -25.91 3.33 -829.73 -2.76 -28.67 16 14 C 0.11 3.46 6.15 86.73 0.53 3.99 16 15 C -0.11 -4.09 6.13 31.78 0.19 -3.90 16 16 C 0.23 11.26 0.88 -10.15 -0.01 11.25 16 17 O -0.59 -30.76 13.16 -148.98 -1.96 -32.72 16 18 C -0.56 -28.83 8.25 25.60 0.21 -28.62 16 19 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 20 C 0.02 1.27 5.31 84.66 0.45 1.71 16 21 N -0.92 -50.66 10.73 21.45 0.23 -50.43 16 22 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.13 6.25 5.62 86.86 0.49 6.74 16 27 C 0.04 0.72 4.88 86.45 0.42 1.14 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.67 6.77 -2.39 -0.02 0.65 16 31 H 0.05 0.67 7.16 -2.38 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.75 6.06 -2.39 -0.01 0.73 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.81 6.36 -2.39 -0.02 0.79 16 37 H 0.06 1.03 5.55 -2.39 -0.01 1.02 16 38 H 0.09 1.54 7.72 -2.38 -0.02 1.52 16 39 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.05 1.59 8.05 -2.39 -0.02 1.57 16 41 H 0.40 9.26 7.32 -92.71 -0.68 8.59 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.09 3.08 8.01 -2.39 -0.02 3.06 16 46 H 0.38 20.86 7.02 -74.06 -0.52 20.34 16 47 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 49 H 0.04 2.15 7.63 -2.38 -0.02 2.13 16 50 H 0.07 1.11 4.77 -2.39 -0.01 1.10 16 51 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.94 386.27 -2.91 -68.84 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.26 Total: 44.97 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 6.41 Total: 22.23 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -9.05 Total: -114.98 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -2.03 Total: -64.95 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -65.94 -2.91 -68.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.412 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds