Wall clock time and date at job start Fri Apr 10 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47101 * 2 1 4 4 N 1.46497 * 109.46983 * 120.00189 * 2 1 3 5 5 C 1.34780 * 119.99566 * 155.00136 * 4 2 1 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 2 8 8 N 1.46901 * 109.46921 * 179.97438 * 7 5 4 9 9 C 1.46893 * 111.00243 * 293.95400 * 8 7 5 10 10 C 1.46906 * 110.99853 * 169.99766 * 8 7 5 11 11 C 1.50693 * 109.47155 * 190.00173 * 10 8 7 12 12 O 1.21285 * 120.00358 * 359.97438 * 11 10 8 13 13 N 1.34783 * 120.00123 * 180.02562 * 11 10 8 14 14 C 1.46920 * 120.62818 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77310 * 126.37269 * 14 13 11 16 16 C 1.53035 * 109.31225 * 54.63611 * 15 14 13 17 17 C 1.53042 * 109.54125 * 298.63469 * 16 15 14 18 18 H 1.09001 * 109.49130 * 301.38619 * 17 16 15 19 19 C 1.50691 * 109.50127 * 181.31554 * 17 16 15 20 20 H 1.08002 * 120.00213 * 0.02562 * 19 17 16 21 21 C 1.37878 * 120.00249 * 179.97438 * 19 17 16 22 22 N 1.31513 * 119.99727 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00231 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46974 * 120.00647 * 23 21 19 26 26 H 1.48498 * 109.47549 * 240.00554 * 23 21 19 27 27 C 1.46919 * 120.63184 * 179.72251 * 13 11 10 28 28 H 1.09006 * 109.47080 * 299.99870 * 1 2 3 29 29 H 1.09001 * 109.47336 * 59.99311 * 1 2 3 30 30 H 1.08999 * 109.47583 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46683 * 240.00482 * 2 1 3 32 32 H 1.08993 * 109.47354 * 60.00033 * 3 2 1 33 33 H 1.09000 * 109.46920 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47178 * 300.00239 * 3 2 1 35 35 H 0.96995 * 120.00423 * 334.99441 * 4 2 1 36 36 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 37 37 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 38 38 H 1.08999 * 109.47439 * 60.00146 * 9 8 7 39 39 H 1.08997 * 109.47257 * 180.02562 * 9 8 7 40 40 H 1.09006 * 109.46808 * 299.99830 * 9 8 7 41 41 H 1.09000 * 109.47257 * 310.00208 * 10 8 7 42 42 H 1.09006 * 109.46871 * 70.00245 * 10 8 7 43 43 H 1.08999 * 109.58932 * 246.15857 * 14 13 11 44 44 H 1.09005 * 109.58695 * 6.44498 * 14 13 11 45 45 H 1.09008 * 109.49561 * 174.58977 * 15 14 13 46 46 H 1.08998 * 109.49599 * 294.68375 * 15 14 13 47 47 H 1.08998 * 109.46368 * 58.65400 * 16 15 14 48 48 H 1.09004 * 109.46238 * 178.63027 * 16 15 14 49 49 H 0.96998 * 120.00260 * 179.97438 * 22 21 19 50 50 H 1.09009 * 109.58668 * 353.41153 * 27 13 11 51 51 H 1.09000 * 109.59493 * 113.83833 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9355 -1.1994 0.2023 7 6 3.7425 -1.9701 2.4245 8 7 5.0889 -2.4990 2.1690 9 6 5.0554 -3.5525 1.1459 10 6 5.7061 -2.9888 3.4089 11 6 7.1608 -3.2931 3.1598 12 8 7.6367 -3.1195 2.0578 13 7 7.9330 -3.7590 4.1614 14 6 7.3709 -3.9750 5.5016 15 6 7.6701 -5.4133 5.9358 16 6 9.1756 -5.6691 5.8370 17 6 9.6297 -5.4984 4.3855 18 1 9.0811 -6.1925 3.7488 19 6 11.1062 -5.7820 4.2836 20 1 11.6654 -6.0570 5.1657 21 6 11.7431 -5.6914 3.0641 22 7 11.0621 -5.3571 1.9899 23 14 13.5735 -6.0423 2.9380 24 1 14.1037 -6.3938 4.2798 25 1 13.7971 -7.1760 2.0051 26 1 14.2748 -4.8365 2.4286 27 6 9.3514 -4.0659 3.9324 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.4623 -0.7387 1.9894 36 1 3.7790 -1.2701 3.2592 37 1 3.0699 -2.7923 2.6690 38 1 4.6584 -3.1440 0.2166 39 1 6.0650 -3.9267 0.9765 40 1 4.4179 -4.3688 1.4856 41 1 5.6218 -2.2258 4.1828 42 1 5.1960 -3.8952 3.7352 43 1 7.8265 -3.2785 6.2055 44 1 6.2929 -3.8155 5.4757 45 1 7.3432 -5.5578 6.9656 46 1 7.1395 -6.1077 5.2843 47 1 9.7071 -4.9581 6.4696 48 1 9.3941 -6.6842 6.1686 49 1 11.5102 -5.2930 1.1320 50 1 9.5796 -3.9690 2.8709 51 1 9.9717 -3.3771 4.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:45 Heat of formation + Delta-G solvation = -92.924389 kcal Electronic energy + Delta-G solvation = -28581.007570 eV Core-core repulsion = 24707.272088 eV Total energy + Delta-G solvation = -3873.735481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25172 -40.70136 -38.62661 -37.46593 -36.53722 -35.29226 -33.43619 -32.71598 -31.64213 -29.76759 -28.82001 -28.07791 -26.99065 -26.04760 -24.20519 -23.34823 -22.11191 -21.39412 -21.25598 -19.67979 -18.62084 -18.08648 -17.92049 -17.08998 -16.82258 -16.61985 -16.48769 -16.35022 -15.60170 -15.36212 -15.25485 -15.10076 -14.94401 -14.59936 -14.51738 -14.19420 -13.92524 -13.83645 -13.67753 -13.43004 -13.13792 -13.05721 -12.93014 -12.83672 -12.76819 -12.55299 -12.52484 -12.24280 -12.23594 -12.19148 -11.88910 -11.76580 -11.59096 -11.06428 -10.93229 -10.84488 -10.54928 -10.39981 -10.05122 -9.34596 -9.20350 -8.11487 -6.28942 1.37647 1.39161 1.51310 1.71918 1.84897 1.98110 2.34943 2.42586 3.06226 3.17179 3.70186 3.81752 4.01570 4.10915 4.15017 4.19002 4.24054 4.30421 4.34407 4.36631 4.38414 4.43075 4.56514 4.62885 4.64729 4.74985 4.77695 4.79300 4.85529 4.91988 4.94981 5.05071 5.13677 5.19295 5.28069 5.28874 5.32478 5.34223 5.39383 5.56274 5.62985 5.69760 5.88178 5.93140 5.97551 6.04495 6.34540 6.69194 6.79693 6.85513 7.40457 7.41091 7.50854 8.91530 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.002445 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.091084 B =11450.604881 C =12347.157839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.132 3.868 3 C -0.160 4.160 4 N -0.714 5.714 5 C 0.506 3.494 6 O -0.572 6.572 7 C 0.040 3.960 8 N -0.538 5.538 9 C 0.029 3.971 10 C 0.053 3.947 11 C 0.491 3.509 12 O -0.580 6.580 13 N -0.614 5.614 14 C 0.103 3.897 15 C -0.126 4.126 16 C -0.106 4.106 17 C 0.038 3.962 18 H -0.017 1.017 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.916 5.916 23 Si 0.957 3.043 24 H -0.258 1.258 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.127 3.873 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.417 0.583 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.258 0.742 50 H 0.071 0.929 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 9.557 8.174 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 C -0.218 4.218 4 N -0.369 5.369 5 C 0.293 3.707 6 O -0.450 6.450 7 C -0.090 4.090 8 N -0.263 5.263 9 C -0.119 4.119 10 C -0.077 4.077 11 C 0.279 3.721 12 O -0.459 6.459 13 N -0.347 5.347 14 C -0.018 4.018 15 C -0.164 4.164 16 C -0.144 4.144 17 C 0.019 3.981 18 H 0.001 0.999 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.555 5.555 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.209 1.209 26 H -0.210 1.210 27 C 0.004 3.996 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.255 0.745 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.158 0.842 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -25.662 10.112 6.533 28.346 hybrid contribution 1.103 -1.000 -0.403 1.543 sum -24.559 9.112 6.130 26.903 Atomic orbital electron populations 1.22002 0.91322 1.03166 1.04189 1.20955 0.95859 0.92502 0.87932 1.22145 1.00119 0.96194 1.03329 1.45964 1.17005 1.56332 1.17550 1.21051 0.81397 0.78517 0.89743 1.90719 1.57141 1.60285 1.36895 1.22137 0.89364 1.01121 0.96406 1.61081 1.20325 1.36532 1.08361 1.22401 1.01223 0.92185 0.96070 1.22045 0.89678 1.02875 0.93097 1.21420 0.89983 0.76814 0.83855 1.90695 1.75787 1.53842 1.25603 1.48548 1.11007 1.63662 1.11484 1.22043 1.00408 0.97163 0.82235 1.21915 0.95656 0.96268 1.02599 1.21516 0.96013 1.00492 0.96351 1.18830 0.94590 0.91602 0.93055 0.99865 1.21575 0.94972 1.46655 0.94074 0.91944 1.25933 1.02740 0.94933 0.95676 1.70111 1.37336 1.48450 0.99583 0.85514 0.80179 0.77529 0.78507 1.18177 1.20889 1.21018 1.21515 0.78610 0.97087 1.02405 0.90190 0.90255 0.91745 0.92563 0.90792 0.95357 0.90668 0.74529 0.84322 0.88430 0.91424 0.93646 0.94441 0.84201 0.89018 0.90193 0.86482 0.87571 0.93114 0.92519 0.93186 0.93307 0.91085 0.95042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.38 71.98 0.68 -0.38 16 2 C 0.13 1.93 3.18 44.99 0.14 2.08 16 3 C -0.16 -2.41 9.48 71.98 0.68 -1.72 16 4 N -0.71 -9.80 5.08 -442.53 -2.25 -12.05 16 5 C 0.51 11.46 7.52 87.66 0.66 12.12 16 6 O -0.57 -20.12 13.97 -3.03 -0.04 -20.16 16 7 C 0.04 0.68 5.45 85.56 0.47 1.15 16 8 N -0.54 -15.73 4.24 -931.65 -3.95 -19.68 16 9 C 0.03 1.00 8.85 127.69 1.13 2.13 16 10 C 0.05 1.35 3.79 85.55 0.32 1.68 16 11 C 0.49 19.92 7.39 87.65 0.65 20.57 16 12 O -0.58 -31.25 13.74 -3.04 -0.04 -31.29 16 13 N -0.61 -24.23 2.98 -819.68 -2.44 -26.67 16 14 C 0.10 2.65 6.34 86.36 0.55 3.20 16 15 C -0.13 -3.48 6.08 30.67 0.19 -3.29 16 16 C -0.11 -4.05 5.11 30.62 0.16 -3.89 16 17 C 0.04 1.97 2.24 -11.60 -0.03 1.95 16 18 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 19 C -0.53 -30.11 8.56 25.60 0.22 -29.89 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.01 0.37 5.30 84.66 0.45 0.81 16 22 N -0.92 -57.91 11.39 21.45 0.24 -57.66 16 23 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 C 0.13 6.49 5.38 86.23 0.46 6.95 16 28 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 1.19 7.58 -2.38 -0.02 1.17 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.42 2.30 8.60 -92.71 -0.80 1.50 16 36 H 0.14 1.39 7.93 -2.39 -0.02 1.37 16 37 H 0.10 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.07 2.50 5.88 -2.39 -0.01 2.48 16 39 H 0.04 2.00 5.82 -2.39 -0.01 1.98 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.14 2.37 7.73 -2.39 -0.02 2.35 16 42 H 0.09 1.77 7.67 -2.38 -0.02 1.76 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.12 1.89 5.93 -2.38 -0.01 1.88 16 45 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.07 4.43 5.12 -2.38 -0.01 4.42 16 51 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -90.39 396.76 0.39 -90.00 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.11 Total: 16.34 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.73 Total: 13.46 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -8.39 Total: -116.06 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.08 Total: -51.45 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -90.39 0.39 -90.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.921 kcal (2) G-P(sol) polarization free energy of solvation -90.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds