Wall clock time and date at job start Fri Apr 10 2020 18:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.45956 * 2 1 4 4 C 1.53042 * 109.46329 * 240.03121 * 2 1 3 5 5 C 1.53198 * 109.30846 * 301.33716 * 4 2 1 6 6 N 1.46930 * 108.77677 * 305.36814 * 5 4 2 7 7 C 1.34774 * 120.62615 * 233.58507 * 6 5 4 8 8 O 1.21587 * 119.99588 * 174.83115 * 7 6 5 9 9 N 1.34773 * 120.00333 * 354.82371 * 7 6 5 10 10 C 1.46502 * 119.99801 * 184.93595 * 9 7 6 11 11 C 1.53041 * 109.46174 * 275.02870 * 10 9 7 12 12 C 1.53191 * 109.31110 * 178.60440 * 11 10 9 13 13 N 1.46921 * 108.76940 * 54.65763 * 12 11 10 14 14 C 1.36933 * 120.63539 * 126.40303 * 13 12 11 15 15 H 1.08000 * 119.99568 * 328.65297 * 14 13 12 16 16 C 1.38812 * 120.00339 * 148.65234 * 14 13 12 17 17 N 1.31615 * 119.99679 * 350.10284 * 16 14 13 18 18 Si 1.86801 * 120.00151 * 170.10216 * 16 14 13 19 19 H 1.48503 * 109.46859 * 59.99829 * 18 16 14 20 20 H 1.48496 * 109.46941 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46822 * 300.00177 * 18 16 14 22 22 C 1.46935 * 118.73358 * 306.38417 * 13 12 11 23 23 C 1.53038 * 109.45557 * 154.97679 * 10 9 7 24 24 C 1.46928 * 118.73552 * 53.60874 * 6 5 4 25 25 C 1.53045 * 109.46468 * 119.95549 * 2 1 3 26 26 H 1.08996 * 109.49748 * 178.61218 * 25 2 1 27 27 C 1.52997 * 109.49421 * 298.70844 * 25 2 1 28 28 O 1.42897 * 109.47110 * 184.99543 * 27 25 2 29 29 H 1.09007 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47657 * 299.97114 * 1 2 3 31 31 H 1.08998 * 109.47527 * 59.98007 * 1 2 3 32 32 H 1.08993 * 109.50339 * 61.29055 * 4 2 1 33 33 H 1.09004 * 109.49499 * 181.36041 * 4 2 1 34 34 H 1.09005 * 109.58034 * 65.15471 * 5 4 2 35 35 H 1.08995 * 109.58613 * 185.43438 * 5 4 2 36 36 H 0.97003 * 119.99971 * 4.94391 * 9 7 6 37 37 H 1.09000 * 109.45899 * 35.00683 * 10 9 7 38 38 H 1.09000 * 109.49805 * 298.57098 * 11 10 9 39 39 H 1.09000 * 109.49687 * 58.66341 * 11 10 9 40 40 H 1.09001 * 109.59593 * 294.86378 * 12 11 10 41 41 H 1.09007 * 109.70042 * 174.51043 * 12 11 10 42 42 H 0.97001 * 120.00426 * 180.02562 * 17 16 14 43 43 H 1.08991 * 109.58700 * 293.81778 * 22 13 12 44 44 H 1.09003 * 109.57934 * 173.39164 * 22 13 12 45 45 H 1.09003 * 109.50149 * 301.33713 * 23 10 9 46 46 H 1.09000 * 109.50389 * 61.43453 * 23 10 9 47 47 H 1.08993 * 109.58617 * 66.18089 * 24 6 5 48 48 H 1.09004 * 109.58172 * 186.60738 * 24 6 5 49 49 H 1.08998 * 109.47125 * 304.99562 * 27 25 2 50 50 H 1.09004 * 109.47432 * 64.99869 * 27 25 2 51 51 H 0.96699 * 114.00638 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.4997 -2.1543 -1.2640 6 7 1.8627 -2.8088 0.0004 7 6 2.5159 -3.9877 0.0005 8 8 2.8936 -4.4732 1.0493 9 7 2.7501 -4.6285 -1.1618 10 6 3.3629 -5.9592 -1.1540 11 6 4.8857 -5.8190 -1.0930 12 6 5.5213 -7.2121 -1.0498 13 7 5.0328 -7.9903 -2.1962 14 6 5.9119 -8.5908 -3.0575 15 1 6.8760 -8.1416 -3.2449 16 6 5.5640 -9.7766 -3.6896 17 7 4.4804 -10.4259 -3.3200 18 14 6.6335 -10.4509 -5.0647 19 1 8.0014 -10.7082 -4.5470 20 1 6.0485 -11.7185 -5.5705 21 1 6.7006 -9.4614 -6.1700 22 6 3.5829 -8.1124 -2.4008 23 6 2.9690 -6.7092 -2.4285 24 6 1.4996 -2.1539 1.2645 25 6 2.0399 -0.7205 1.2502 26 1 3.1296 -0.7424 1.2384 27 6 1.5568 0.0198 2.4989 28 8 2.1279 -0.5839 3.6614 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5133 0.8901 31 1 -0.3634 0.5141 -0.8898 32 1 1.6958 -0.1937 -2.1398 33 1 3.1296 -0.7423 -1.2385 34 1 0.4147 -2.1349 -1.3671 35 1 1.9364 -2.7012 -2.0995 36 1 2.5131 -4.2085 -2.0035 37 1 3.0141 -6.5145 -0.2834 38 1 5.2376 -5.2854 -1.9759 39 1 5.1643 -5.2642 -0.1970 40 1 5.2422 -7.7127 -0.1227 41 1 6.6063 -7.1228 -1.1044 42 1 4.2374 -11.2548 -3.7613 43 1 3.1457 -8.6865 -1.5840 44 1 3.3887 -8.6150 -3.3484 45 1 1.8832 -6.7882 -2.4834 46 1 3.3391 -6.1673 -3.2988 47 1 0.4147 -2.1346 1.3676 48 1 1.9383 -2.7013 2.0988 49 1 1.8641 1.0642 2.4438 50 1 0.4698 -0.0366 2.5571 51 1 1.8642 -0.1651 4.4921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598652465.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:51 Heat of formation + Delta-G solvation = -85.664371 kcal Electronic energy + Delta-G solvation = -29174.299353 eV Core-core repulsion = 25300.878690 eV Total energy + Delta-G solvation = -3873.420663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73661 -39.99191 -38.83000 -37.39162 -36.04556 -34.92017 -33.75364 -32.51376 -31.73695 -31.06301 -28.73061 -27.36260 -26.42023 -25.62186 -23.92045 -23.55379 -23.01883 -21.29513 -21.07667 -19.72964 -19.01567 -18.49913 -18.25724 -17.51741 -16.85814 -16.58520 -16.30291 -16.09390 -15.60982 -15.42960 -15.34438 -15.10578 -14.96082 -14.80540 -14.63327 -14.47798 -14.07997 -14.01292 -13.70990 -13.21932 -12.95485 -12.90214 -12.75204 -12.59790 -12.53697 -12.50844 -12.23487 -12.06656 -12.03092 -11.88751 -11.77302 -11.58349 -11.45600 -11.38438 -11.36377 -11.06354 -10.81617 -10.56041 -10.13010 -9.42137 -8.65541 -7.86503 -5.38323 1.48963 1.50707 1.57942 1.62042 2.12970 2.51743 2.91986 3.29809 3.31166 3.66439 3.71769 3.78336 3.88985 4.00781 4.03803 4.06650 4.22196 4.32579 4.36868 4.43556 4.45623 4.51405 4.57686 4.63430 4.64363 4.71182 4.78018 4.83390 4.86691 4.91980 4.97892 5.03202 5.06384 5.09858 5.15257 5.15586 5.24774 5.28829 5.34941 5.47613 5.55165 5.56355 5.61310 5.64124 5.72494 5.96479 6.41704 6.95215 6.99398 7.15800 7.57691 7.83056 8.38020 9.20000 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.002469 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.564356 B =11337.022351 C =11721.358659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.126 4.126 5 C 0.102 3.898 6 N -0.626 5.626 7 C 0.698 3.302 8 O -0.638 6.638 9 N -0.727 5.727 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.146 3.854 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.066 0.934 16 C -0.048 4.048 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.180 3.820 23 C -0.127 4.127 24 C 0.139 3.861 25 C -0.095 4.095 26 H 0.052 0.948 27 C 0.082 3.918 28 O -0.600 6.600 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.406 0.594 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.057 0.943 42 H 0.252 0.748 43 H -0.007 1.007 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.067 0.933 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 27.573 4.538 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.020 4.020 6 N -0.363 5.363 7 C 0.400 3.600 8 O -0.519 6.519 9 N -0.383 5.383 10 C 0.076 3.924 11 C -0.163 4.163 12 C 0.020 3.980 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.084 0.916 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.801 3.199 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.054 3.946 23 C -0.166 4.166 24 C 0.016 3.984 25 C -0.115 4.115 26 H 0.071 0.929 27 C 0.004 3.996 28 O -0.409 6.409 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.023 0.977 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.011 0.989 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.623 26.674 4.767 29.484 hybrid contribution 0.431 -0.511 -0.219 0.703 sum -11.192 26.163 4.548 28.818 Atomic orbital electron populations 1.22005 0.93640 1.02248 1.03123 1.21045 0.97054 0.99406 0.92166 0.89246 1.21949 1.00576 0.94564 0.99352 1.21964 1.01639 0.94016 0.84403 1.47335 1.60108 1.20162 1.08693 1.16128 0.78655 0.81259 0.83963 1.90883 1.59161 1.69197 1.32668 1.45318 1.66484 1.19208 1.07332 1.20497 0.92137 0.81552 0.98229 1.22168 0.95605 0.97678 1.00850 1.20945 0.97311 0.90617 0.89131 1.44301 1.02150 1.59488 1.27336 1.19485 0.99096 1.02039 1.18985 0.91618 1.25958 0.99395 0.96003 1.03010 1.70126 1.27626 1.16956 1.43578 0.85262 0.78252 0.77180 0.79218 1.20378 1.21915 1.19948 1.20583 0.82557 0.91942 0.99505 1.22270 1.00534 0.97632 0.96194 1.21435 0.99597 0.92504 0.84832 1.21514 1.00070 0.94377 0.95496 0.92929 1.22297 0.97483 0.95761 0.84021 1.86521 1.74724 1.61703 1.17939 0.92793 0.91569 0.90877 0.87652 0.92742 0.89085 0.89812 0.75481 0.93017 0.91663 0.92893 0.97700 0.92451 0.93933 0.98893 0.91374 0.90505 0.91121 0.90230 0.92372 0.91598 0.91474 0.75376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.11 71.98 0.58 -0.54 16 2 C -0.08 -0.81 2.70 -10.77 -0.03 -0.84 16 3 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 4 C -0.13 -1.42 5.63 30.67 0.17 -1.25 16 5 C 0.10 1.49 5.92 86.36 0.51 2.00 16 6 N -0.63 -14.98 2.97 -836.90 -2.49 -17.46 16 7 C 0.70 23.15 8.26 179.06 1.48 24.63 16 8 O -0.64 -27.69 15.43 -3.99 -0.06 -27.75 16 9 N -0.73 -21.72 4.99 -457.69 -2.28 -24.00 16 10 C 0.18 6.72 2.38 45.02 0.11 6.83 16 11 C -0.12 -4.80 5.65 30.67 0.17 -4.63 16 12 C 0.15 6.73 6.52 86.36 0.56 7.29 16 13 N -0.61 -31.80 2.99 -699.09 -2.09 -33.89 16 14 C -0.27 -14.89 9.59 84.03 0.81 -14.09 16 15 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 16 C -0.05 -2.72 5.07 84.86 0.43 -2.29 16 17 N -0.94 -55.77 11.00 21.65 0.24 -55.54 16 18 Si 0.97 44.93 29.57 68.60 2.03 46.96 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.18 8.87 5.25 86.36 0.45 9.33 16 23 C -0.13 -4.70 5.55 30.67 0.17 -4.53 16 24 C 0.14 3.16 5.09 86.36 0.44 3.60 16 25 C -0.09 -1.61 2.35 -10.72 -0.03 -1.63 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 C 0.08 1.05 5.96 71.98 0.43 1.48 16 28 O -0.60 -10.61 13.31 -148.98 -1.98 -12.60 16 29 H 0.05 0.51 4.98 -2.38 -0.01 0.50 16 30 H 0.07 0.38 6.57 -2.39 -0.02 0.36 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.09 1.01 6.69 -2.38 -0.02 1.00 16 35 H 0.08 1.13 5.65 -2.39 -0.01 1.11 16 36 H 0.41 9.31 6.09 -92.71 -0.56 8.75 16 37 H 0.05 2.24 7.65 -2.39 -0.02 2.22 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 40 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.08 1.50 6.69 -2.39 -0.02 1.48 16 48 H 0.06 1.83 6.84 -2.38 -0.02 1.82 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.07 0.61 6.73 -2.39 -0.02 0.60 16 51 H 0.40 3.05 9.12 -74.06 -0.68 2.38 16 Total: -1.00 -77.11 380.44 -0.68 -77.78 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.30 Total: 21.13 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.26 Total: 25.37 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -6.62 Total: -130.89 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -2.04 Total: -40.35 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -77.11 -0.68 -77.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652465.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.881 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds