Wall clock time and date at job start Fri Apr 10 2020 18:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46075 * 2 1 4 4 C 1.53035 * 109.46091 * 240.03840 * 2 1 3 5 5 C 1.53627 * 109.24323 * 178.49194 * 4 2 1 6 6 N 1.46918 * 108.54429 * 54.85421 * 5 4 2 7 7 C 1.34776 * 120.63475 * 126.37051 * 6 5 4 8 8 O 1.21587 * 120.00508 * 184.87617 * 7 6 5 9 9 N 1.34780 * 119.99340 * 4.87323 * 7 6 5 10 10 C 1.46501 * 119.99852 * 175.02474 * 9 7 6 11 11 C 1.53035 * 109.46170 * 155.00424 * 10 9 7 12 12 C 1.53196 * 109.31509 * 181.38404 * 11 10 9 13 13 N 1.46926 * 108.77550 * 305.36307 * 12 11 10 14 14 C 1.36930 * 120.63349 * 233.58457 * 13 12 11 15 15 H 1.08006 * 119.99923 * 27.99445 * 14 13 12 16 16 C 1.38809 * 120.00362 * 207.99460 * 14 13 12 17 17 N 1.31614 * 120.00042 * 29.03012 * 16 14 13 18 18 Si 1.86805 * 120.00120 * 209.03283 * 16 14 13 19 19 H 1.48501 * 109.46905 * 94.99128 * 18 16 14 20 20 H 1.48503 * 109.47040 * 214.99139 * 18 16 14 21 21 H 1.48501 * 109.46996 * 334.98863 * 18 16 14 22 22 C 1.46930 * 118.73676 * 53.85760 * 13 12 11 23 23 C 1.53052 * 109.45924 * 275.06899 * 10 9 7 24 24 C 1.46931 * 118.73999 * 306.09777 * 6 5 4 25 25 C 1.53042 * 109.46098 * 119.97044 * 2 1 3 26 26 H 1.08996 * 109.49814 * 61.43027 * 25 2 1 27 27 C 1.53006 * 109.49858 * 301.33872 * 25 2 1 28 28 O 1.42896 * 109.47498 * 175.16054 * 27 25 2 29 29 H 1.09005 * 109.47139 * 300.02631 * 1 2 3 30 30 H 1.08997 * 109.47303 * 60.03290 * 1 2 3 31 31 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49852 * 298.56366 * 4 2 1 33 33 H 1.09001 * 109.50031 * 58.62814 * 4 2 1 34 34 H 1.08999 * 109.73223 * 295.11822 * 5 4 2 35 35 H 1.08994 * 109.66292 * 174.55192 * 5 4 2 36 36 H 0.96996 * 120.00298 * 355.02797 * 9 7 6 37 37 H 1.08995 * 109.45087 * 35.03248 * 10 9 7 38 38 H 1.08997 * 109.49927 * 61.43200 * 11 10 9 39 39 H 1.08999 * 109.52252 * 301.35046 * 11 10 9 40 40 H 1.09000 * 109.58556 * 185.57460 * 12 11 10 41 41 H 1.08999 * 109.58548 * 65.14843 * 12 11 10 42 42 H 0.97006 * 120.00331 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58749 * 65.92905 * 22 13 12 44 44 H 1.09004 * 109.58529 * 186.35067 * 22 13 12 45 45 H 1.09000 * 109.49704 * 298.56549 * 23 10 9 46 46 H 1.08999 * 109.49056 * 58.62938 * 23 10 9 47 47 H 1.08997 * 109.58749 * 173.64740 * 24 6 5 48 48 H 1.08995 * 109.58710 * 294.07263 * 24 6 5 49 49 H 1.08999 * 109.46791 * 295.16415 * 27 25 2 50 50 H 1.08999 * 109.47012 * 55.15839 * 27 25 2 51 51 H 0.96696 * 114.00323 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5757 -0.6847 -1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9621 -2.2571 -0.0001 8 8 5.2949 -2.7747 1.0486 9 7 5.4875 -2.6918 -1.1626 10 6 6.5389 -3.7119 -1.1552 11 6 6.5276 -4.4655 -2.4872 12 6 7.6053 -5.5540 -2.4626 13 7 8.8956 -4.9347 -2.1308 14 6 9.9867 -5.1206 -2.9370 15 1 9.8528 -5.3094 -3.9919 16 6 11.2649 -5.0666 -2.3984 17 7 11.4649 -5.4060 -1.1426 18 14 12.7014 -4.5121 -3.4561 19 1 12.9365 -3.0604 -3.2499 20 1 13.9197 -5.2701 -3.0732 21 1 12.3900 -4.7650 -4.8859 22 6 8.9945 -4.1169 -0.9141 23 6 7.9000 -3.0399 -0.9590 24 6 3.5714 -0.6886 1.2642 25 6 2.0399 -0.7208 1.2500 26 1 1.6978 -1.7557 1.2382 27 6 1.5028 -0.0191 2.4991 28 8 1.8853 -0.7567 3.6616 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6979 -1.7555 -1.2384 33 1 1.6567 -0.2209 -2.1398 34 1 3.9188 0.3451 -1.3631 35 1 3.9487 -1.2781 -2.0990 36 1 5.1695 -2.3292 -2.0042 37 1 6.3591 -4.4126 -0.3400 38 1 6.7320 -3.7695 -3.3007 39 1 5.5505 -4.9243 -2.6378 40 1 7.6685 -6.0277 -3.4423 41 1 7.3537 -6.3004 -1.7091 42 1 12.3581 -5.3679 -0.7661 43 1 8.8539 -4.7484 -0.0369 44 1 9.9748 -3.6420 -0.8717 45 1 8.0914 -2.3573 -1.7870 46 1 7.8991 -2.4837 -0.0216 47 1 3.9417 -1.2846 2.0983 48 1 3.9142 0.3408 1.3674 49 1 1.9155 0.9881 2.5557 50 1 0.4155 0.0364 2.4454 51 1 1.5777 -0.3690 4.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598652466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:56 Heat of formation + Delta-G solvation = -63.393988 kcal Electronic energy + Delta-G solvation = -29015.203366 eV Core-core repulsion = 25142.748419 eV Total energy + Delta-G solvation = -3872.454947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.55545 -38.80618 -37.33305 -36.56567 -34.43514 -34.13944 -32.17325 -31.59233 -29.99328 -29.53460 -28.41676 -26.26591 -24.85275 -23.60330 -22.40532 -22.21752 -21.83496 -20.40953 -19.69896 -19.24192 -17.92932 -17.66968 -16.69384 -16.34310 -15.50370 -15.29366 -14.86742 -14.76597 -14.61866 -14.33520 -13.93326 -13.81324 -13.70963 -13.55827 -13.50306 -13.03443 -12.92209 -12.65354 -12.51384 -12.28576 -12.15582 -11.99221 -11.51505 -11.38961 -11.26978 -11.22981 -10.89685 -10.72642 -10.68990 -10.65058 -10.35201 -10.25293 -10.19913 -10.03254 -9.85581 -9.70467 -9.50852 -8.79849 -8.44624 -8.31149 -6.70491 -5.79753 -3.14015 2.73826 3.40741 3.41595 3.49211 3.50277 3.80287 4.02298 4.31975 4.39284 4.53917 4.58249 4.61198 4.86145 5.03876 5.04636 5.08779 5.17844 5.22238 5.25315 5.31289 5.38947 5.44977 5.48546 5.50901 5.54754 5.62966 5.69131 5.75392 5.82932 5.89331 5.92563 6.09235 6.12980 6.28816 6.38517 6.45798 6.48946 6.65272 6.69243 6.80612 6.94996 6.99217 7.14065 7.32521 7.33682 7.57598 7.86651 8.15082 8.44870 8.83598 9.20586 9.87249 10.45962 11.28267 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002485 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.862054 B =11263.637562 C =11694.225793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.635 5.635 7 C 0.706 3.294 8 O -0.585 6.585 9 N -0.741 5.741 10 C 0.167 3.833 11 C -0.138 4.138 12 C 0.149 3.851 13 N -0.590 5.590 14 C -0.264 4.264 15 H 0.066 0.934 16 C 0.009 3.991 17 N -0.886 5.886 18 Si 0.890 3.110 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.176 3.824 23 C -0.145 4.145 24 C 0.139 3.861 25 C -0.098 4.098 26 H 0.082 0.918 27 C 0.080 3.920 28 O -0.569 6.569 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.388 0.612 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.101 0.899 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.051 0.949 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.341 14.598 2.034 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.013 4.013 6 N -0.373 5.373 7 C 0.407 3.593 8 O -0.462 6.462 9 N -0.396 5.396 10 C 0.063 3.937 11 C -0.178 4.178 12 C 0.022 3.978 13 N -0.313 5.313 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.191 4.191 17 N -0.528 5.528 18 Si 0.719 3.281 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.203 1.203 22 C 0.049 3.951 23 C -0.186 4.186 24 C 0.016 3.984 25 C -0.117 4.117 26 H 0.101 0.899 27 C 0.002 3.998 28 O -0.374 6.374 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.224 0.776 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -23.608 13.773 2.438 27.440 hybrid contribution 0.304 1.012 -0.529 1.181 sum -23.304 14.784 1.909 27.664 Atomic orbital electron populations 1.21925 0.94927 1.02166 1.01791 1.21077 0.95742 0.99504 0.94018 0.90795 1.22046 0.95174 1.01616 0.97802 1.21686 0.94074 0.99167 0.86363 1.47287 1.46108 1.37086 1.06802 1.15907 0.78976 0.79716 0.84683 1.90924 1.65056 1.59451 1.30793 1.45684 1.42170 1.45161 1.06606 1.20895 0.85653 0.88387 0.98743 1.22332 0.99662 0.99691 0.96078 1.20836 0.86007 0.92171 0.98808 1.44146 1.05885 1.54539 1.26743 1.19090 0.84136 1.46040 0.90007 0.91629 1.24945 0.97577 1.00402 0.96169 1.70215 1.21351 1.46704 1.14523 0.86473 0.82426 0.78805 0.80378 1.21470 1.21922 1.20300 1.20742 0.96074 0.89997 0.88273 1.22614 0.95616 0.99946 1.00377 1.21382 0.91901 0.98515 0.86592 1.21563 0.96265 1.01039 0.92847 0.89930 1.22248 0.98069 0.94068 0.85397 1.86557 1.80314 1.54173 1.16367 0.92406 0.92428 0.92460 0.91210 0.90506 0.91415 0.90321 0.77611 0.89969 0.91961 0.92683 0.92296 0.96171 0.93619 0.95866 0.90670 0.92680 0.92927 0.88028 0.92304 0.93610 0.93072 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.81 37.16 0.33 -0.48 16 2 C -0.08 -0.56 2.22 -90.58 -0.20 -0.76 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -0.88 5.38 -26.39 -0.14 -1.02 16 5 C 0.11 0.95 6.42 -3.49 -0.02 0.92 16 6 N -0.63 -7.92 2.97 -178.24 -0.53 -8.45 16 7 C 0.71 11.74 8.26 -86.92 -0.72 11.02 16 8 O -0.58 -12.40 15.39 5.29 0.08 -12.32 16 9 N -0.74 -11.26 4.99 -58.63 -0.29 -11.55 16 10 C 0.17 3.05 2.46 -67.88 -0.17 2.89 16 11 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 12 C 0.15 3.13 6.51 -3.71 -0.02 3.11 16 13 N -0.59 -14.97 2.98 -172.05 -0.51 -15.49 16 14 C -0.26 -7.30 9.48 -15.06 -0.14 -7.45 16 15 H 0.07 1.78 7.98 -52.48 -0.42 1.37 16 16 C 0.01 0.27 4.56 -17.43 -0.08 0.19 16 17 N -0.89 -26.38 12.02 55.49 0.67 -25.71 16 18 Si 0.89 21.79 29.64 -169.99 -5.04 16.75 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.18 4.35 5.46 -3.49 -0.02 4.33 16 23 C -0.15 -2.98 5.67 -26.38 -0.15 -3.13 16 24 C 0.14 1.63 5.56 -3.71 -0.02 1.61 16 25 C -0.10 -0.87 2.12 -90.50 -0.19 -1.07 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 C 0.08 0.59 6.18 37.16 0.23 0.82 16 28 O -0.57 -5.17 13.30 -35.23 -0.47 -5.63 16 29 H 0.06 0.27 6.30 -51.93 -0.33 -0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.62 5.64 -51.93 -0.29 0.33 16 36 H 0.39 4.72 6.09 -40.82 -0.25 4.47 16 37 H 0.08 1.71 7.51 -51.93 -0.39 1.32 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 2.05 6.43 -51.93 -0.33 1.72 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 1.54 6.84 -51.93 -0.35 1.18 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.05 0.29 6.15 -51.93 -0.32 -0.02 16 51 H 0.38 1.63 9.12 45.56 0.42 2.05 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -34.74 387.67 -9.88 -44.62 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.16 Total: 3.46 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.47 Total: 8.47 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.67 Total: -61.20 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.39 Total: -17.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.74 -9.88 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.774 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds