Wall clock time and date at job start Fri Apr 10 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46075 * 2 1 4 4 C 1.53035 * 109.46091 * 240.03840 * 2 1 3 5 5 C 1.53627 * 109.24323 * 178.49194 * 4 2 1 6 6 N 1.46918 * 108.54429 * 54.85421 * 5 4 2 7 7 C 1.34776 * 120.63475 * 126.37051 * 6 5 4 8 8 O 1.21587 * 120.00508 * 184.87617 * 7 6 5 9 9 N 1.34780 * 119.99340 * 4.87323 * 7 6 5 10 10 C 1.46501 * 119.99852 * 175.02474 * 9 7 6 11 11 C 1.53035 * 109.46170 * 155.00424 * 10 9 7 12 12 C 1.53196 * 109.31509 * 181.38404 * 11 10 9 13 13 N 1.46926 * 108.77550 * 305.36307 * 12 11 10 14 14 C 1.36930 * 120.63349 * 233.58457 * 13 12 11 15 15 H 1.08006 * 119.99923 * 27.99445 * 14 13 12 16 16 C 1.38809 * 120.00362 * 207.99460 * 14 13 12 17 17 N 1.31614 * 120.00042 * 29.03012 * 16 14 13 18 18 Si 1.86805 * 120.00120 * 209.03283 * 16 14 13 19 19 H 1.48501 * 109.46905 * 94.99128 * 18 16 14 20 20 H 1.48503 * 109.47040 * 214.99139 * 18 16 14 21 21 H 1.48501 * 109.46996 * 334.98863 * 18 16 14 22 22 C 1.46930 * 118.73676 * 53.85760 * 13 12 11 23 23 C 1.53052 * 109.45924 * 275.06899 * 10 9 7 24 24 C 1.46931 * 118.73999 * 306.09777 * 6 5 4 25 25 C 1.53042 * 109.46098 * 119.97044 * 2 1 3 26 26 H 1.08996 * 109.49814 * 61.43027 * 25 2 1 27 27 C 1.53006 * 109.49858 * 301.33872 * 25 2 1 28 28 O 1.42896 * 109.47498 * 175.16054 * 27 25 2 29 29 H 1.09005 * 109.47139 * 300.02631 * 1 2 3 30 30 H 1.08997 * 109.47303 * 60.03290 * 1 2 3 31 31 H 1.09006 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49852 * 298.56366 * 4 2 1 33 33 H 1.09001 * 109.50031 * 58.62814 * 4 2 1 34 34 H 1.08999 * 109.73223 * 295.11822 * 5 4 2 35 35 H 1.08994 * 109.66292 * 174.55192 * 5 4 2 36 36 H 0.96996 * 120.00298 * 355.02797 * 9 7 6 37 37 H 1.08995 * 109.45087 * 35.03248 * 10 9 7 38 38 H 1.08997 * 109.49927 * 61.43200 * 11 10 9 39 39 H 1.08999 * 109.52252 * 301.35046 * 11 10 9 40 40 H 1.09000 * 109.58556 * 185.57460 * 12 11 10 41 41 H 1.08999 * 109.58548 * 65.14843 * 12 11 10 42 42 H 0.97006 * 120.00331 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.58749 * 65.92905 * 22 13 12 44 44 H 1.09004 * 109.58529 * 186.35067 * 22 13 12 45 45 H 1.09000 * 109.49704 * 298.56549 * 23 10 9 46 46 H 1.08999 * 109.49056 * 58.62938 * 23 10 9 47 47 H 1.08997 * 109.58749 * 173.64740 * 24 6 5 48 48 H 1.08995 * 109.58710 * 294.07263 * 24 6 5 49 49 H 1.08999 * 109.46791 * 295.16415 * 27 25 2 50 50 H 1.08999 * 109.47012 * 55.15839 * 27 25 2 51 51 H 0.96696 * 114.00323 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5757 -0.6847 -1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9621 -2.2571 -0.0001 8 8 5.2949 -2.7747 1.0486 9 7 5.4875 -2.6918 -1.1626 10 6 6.5389 -3.7119 -1.1552 11 6 6.5276 -4.4655 -2.4872 12 6 7.6053 -5.5540 -2.4626 13 7 8.8956 -4.9347 -2.1308 14 6 9.9867 -5.1206 -2.9370 15 1 9.8528 -5.3094 -3.9919 16 6 11.2649 -5.0666 -2.3984 17 7 11.4649 -5.4060 -1.1426 18 14 12.7014 -4.5121 -3.4561 19 1 12.9365 -3.0604 -3.2499 20 1 13.9197 -5.2701 -3.0732 21 1 12.3900 -4.7650 -4.8859 22 6 8.9945 -4.1169 -0.9141 23 6 7.9000 -3.0399 -0.9590 24 6 3.5714 -0.6886 1.2642 25 6 2.0399 -0.7208 1.2500 26 1 1.6978 -1.7557 1.2382 27 6 1.5028 -0.0191 2.4991 28 8 1.8853 -0.7567 3.6616 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 1.6979 -1.7555 -1.2384 33 1 1.6567 -0.2209 -2.1398 34 1 3.9188 0.3451 -1.3631 35 1 3.9487 -1.2781 -2.0990 36 1 5.1695 -2.3292 -2.0042 37 1 6.3591 -4.4126 -0.3400 38 1 6.7320 -3.7695 -3.3007 39 1 5.5505 -4.9243 -2.6378 40 1 7.6685 -6.0277 -3.4423 41 1 7.3537 -6.3004 -1.7091 42 1 12.3581 -5.3679 -0.7661 43 1 8.8539 -4.7484 -0.0369 44 1 9.9748 -3.6420 -0.8717 45 1 8.0914 -2.3573 -1.7870 46 1 7.8991 -2.4837 -0.0216 47 1 3.9417 -1.2846 2.0983 48 1 3.9142 0.3408 1.3674 49 1 1.9155 0.9881 2.5557 50 1 0.4155 0.0364 2.4454 51 1 1.5777 -0.3690 4.4923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598652466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:55 Heat of formation + Delta-G solvation = -88.791090 kcal Electronic energy + Delta-G solvation = -29016.304667 eV Core-core repulsion = 25142.748419 eV Total energy + Delta-G solvation = -3873.556248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.65332 -39.87079 -38.82685 -37.33698 -36.05559 -35.11676 -33.84747 -32.49374 -31.73164 -31.20972 -29.16552 -27.29569 -26.46892 -24.56967 -23.96243 -23.45244 -23.04073 -21.27952 -21.19099 -20.46354 -19.19185 -18.54897 -18.29301 -17.55605 -16.80797 -16.56573 -16.19654 -15.85881 -15.48566 -15.42889 -15.28203 -15.25880 -14.82638 -14.78346 -14.61187 -14.38743 -14.19511 -14.00517 -13.76310 -13.24146 -13.14799 -13.11858 -12.73257 -12.64936 -12.61973 -12.58440 -12.19735 -12.10287 -12.04344 -11.87636 -11.83594 -11.55081 -11.43965 -11.35104 -11.32311 -11.08941 -10.80236 -10.53448 -10.15170 -9.47032 -8.78744 -7.92445 -5.30467 1.46367 1.49241 1.58629 1.60860 2.12504 2.51695 2.92028 3.20009 3.29916 3.63872 3.73691 3.74400 3.86845 3.97921 3.99969 4.06667 4.21725 4.32026 4.38308 4.44470 4.49198 4.52754 4.56802 4.62567 4.66827 4.72735 4.77357 4.79392 4.85039 4.92764 4.99082 5.01605 5.06080 5.06706 5.11019 5.12076 5.20106 5.27476 5.34891 5.39341 5.52140 5.55807 5.56887 5.60952 5.69158 5.95500 6.34722 6.94708 6.99331 7.09252 7.57580 7.82016 8.37540 9.14489 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.002485 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.862054 B =11263.637562 C =11694.225793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.103 3.897 6 N -0.628 5.628 7 C 0.698 3.302 8 O -0.640 6.640 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.119 4.119 12 C 0.142 3.858 13 N -0.606 5.606 14 C -0.270 4.270 15 H 0.074 0.926 16 C -0.047 4.047 17 N -0.928 5.928 18 Si 0.959 3.041 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.262 1.262 22 C 0.185 3.815 23 C -0.127 4.127 24 C 0.137 3.863 25 C -0.092 4.092 26 H 0.053 0.947 27 C 0.079 3.921 28 O -0.600 6.600 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.408 0.592 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.009 0.991 42 H 0.250 0.750 43 H -0.010 1.010 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 17.094 -0.664 31.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.162 4.162 5 C -0.019 4.019 6 N -0.364 5.364 7 C 0.399 3.601 8 O -0.522 6.522 9 N -0.382 5.382 10 C 0.073 3.927 11 C -0.158 4.158 12 C 0.016 3.984 13 N -0.329 5.329 14 C -0.399 4.399 15 H 0.091 0.909 16 C -0.243 4.243 17 N -0.573 5.573 18 Si 0.787 3.213 19 H -0.214 1.214 20 H -0.225 1.225 21 H -0.186 1.186 22 C 0.058 3.942 23 C -0.168 4.168 24 C 0.014 3.986 25 C -0.112 4.112 26 H 0.072 0.928 27 C 0.002 3.998 28 O -0.409 6.409 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.059 0.941 43 H 0.008 0.992 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -26.147 16.320 -0.317 30.824 hybrid contribution 1.000 0.212 0.371 1.088 sum -25.147 16.533 0.054 30.095 Atomic orbital electron populations 1.21896 0.93686 1.01896 1.02979 1.21081 0.96679 0.99767 0.92295 0.89152 1.22048 0.93648 1.01306 0.99170 1.22056 0.95411 1.00121 0.84349 1.47366 1.44687 1.35608 1.08789 1.16158 0.79540 0.80340 0.84040 1.90893 1.67043 1.61463 1.32784 1.45263 1.41190 1.44468 1.07279 1.20515 0.85113 0.88414 0.98652 1.22119 0.99760 0.98547 0.95391 1.21041 0.85255 0.93310 0.98825 1.44402 1.06987 1.55178 1.26363 1.19480 0.84981 1.44851 0.90611 0.90873 1.25775 1.00259 1.00896 0.97410 1.70344 1.21615 1.48725 1.16596 0.85384 0.78762 0.77795 0.79377 1.21443 1.22511 1.18568 1.20473 0.96002 0.90408 0.87312 1.22357 0.95695 0.98509 1.00202 1.21432 0.93957 0.98238 0.84971 1.21525 0.93988 1.00189 0.95448 0.92829 1.22353 0.99230 0.94212 0.84048 1.86520 1.80968 1.55469 1.17932 0.91535 0.90961 0.93473 0.92588 0.87593 0.89336 0.89388 0.75274 0.93035 0.90279 0.89254 0.91175 0.97348 0.94100 0.99171 0.93806 0.91575 0.94019 0.92342 0.90554 0.91880 0.91070 0.75401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.81 71.98 0.63 -0.47 16 2 C -0.08 -0.80 2.22 -10.77 -0.02 -0.83 16 3 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.12 -1.28 5.38 30.82 0.17 -1.11 16 5 C 0.10 1.43 6.42 86.51 0.56 1.98 16 6 N -0.63 -15.09 2.97 -836.09 -2.48 -17.57 16 7 C 0.70 23.31 8.26 179.05 1.48 24.79 16 8 O -0.64 -28.54 15.39 -3.99 -0.06 -28.60 16 9 N -0.72 -21.09 4.99 -457.67 -2.28 -23.38 16 10 C 0.18 6.46 2.46 45.02 0.11 6.57 16 11 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 12 C 0.14 5.86 6.51 86.36 0.56 6.43 16 13 N -0.61 -31.11 2.98 -698.24 -2.08 -33.19 16 14 C -0.27 -14.96 9.48 84.03 0.80 -14.16 16 15 H 0.07 3.89 7.98 -2.91 -0.02 3.87 16 16 C -0.05 -2.67 4.56 84.86 0.39 -2.28 16 17 N -0.93 -57.32 12.02 21.65 0.26 -57.06 16 18 Si 0.96 45.30 29.64 68.60 2.03 47.33 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.18 9.56 5.46 86.51 0.47 10.04 16 23 C -0.13 -5.31 5.67 30.82 0.17 -5.14 16 24 C 0.14 3.19 5.56 86.36 0.48 3.67 16 25 C -0.09 -1.55 2.12 -10.71 -0.02 -1.57 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 C 0.08 1.03 6.18 71.98 0.45 1.48 16 28 O -0.60 -10.86 13.30 -148.98 -1.98 -12.84 16 29 H 0.07 0.39 6.30 -2.38 -0.02 0.38 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.05 5.64 -2.39 -0.01 1.04 16 36 H 0.41 8.66 6.09 -92.71 -0.56 8.10 16 37 H 0.05 2.22 7.51 -2.39 -0.02 2.20 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.04 2.51 6.43 -2.38 -0.02 2.49 16 45 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.06 1.89 6.84 -2.39 -0.02 1.87 16 48 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.64 6.15 -2.39 -0.01 0.63 16 51 H 0.40 3.24 9.12 -74.06 -0.68 2.56 16 Total: -1.00 -80.48 387.67 -0.52 -81.00 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.32 Total: 18.52 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 6.39 Total: 25.78 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.58 Total: -131.19 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.04 Total: -41.44 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -80.48 -0.52 -81.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.793 kcal (2) G-P(sol) polarization free energy of solvation -80.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds