Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.45898 * 2 1 4 4 C 1.53036 * 109.46185 * 119.96032 * 2 1 3 5 5 C 1.52766 * 109.38345 * 181.26167 * 4 2 1 6 6 N 1.46918 * 109.00766 * 305.58725 * 5 4 2 7 7 C 1.34778 * 120.63171 * 233.58923 * 6 5 4 8 8 O 1.21586 * 120.00379 * 185.33576 * 7 6 5 9 9 N 1.34777 * 119.99964 * 5.32735 * 7 6 5 10 10 C 1.46496 * 120.00242 * 185.41760 * 9 7 6 11 11 C 1.53046 * 109.46014 * 155.00434 * 10 9 7 12 12 C 1.53194 * 109.31120 * 181.38873 * 11 10 9 13 13 N 1.46919 * 108.77667 * 305.36345 * 12 11 10 14 14 C 1.36939 * 120.63219 * 233.33552 * 13 12 11 15 15 H 1.07999 * 119.99711 * 145.78139 * 14 13 12 16 16 C 1.38811 * 119.99912 * 325.77892 * 14 13 12 17 17 N 1.31620 * 119.99958 * 353.81090 * 16 14 13 18 18 Si 1.86799 * 119.99979 * 173.80054 * 16 14 13 19 19 H 1.48499 * 109.46958 * 90.00656 * 18 16 14 20 20 H 1.48499 * 109.46996 * 210.00314 * 18 16 14 21 21 H 1.48500 * 109.47226 * 330.00479 * 18 16 14 22 22 C 1.46927 * 118.73952 * 53.61228 * 13 12 11 23 23 C 1.53034 * 109.46506 * 275.07277 * 10 9 7 24 24 C 1.46926 * 118.73902 * 53.30869 * 6 5 4 25 25 C 1.53042 * 109.46173 * 240.02898 * 2 1 3 26 26 H 1.08997 * 109.49706 * 298.56675 * 25 2 1 27 27 C 1.53006 * 109.52097 * 58.64473 * 25 2 1 28 28 O 1.42904 * 109.46529 * 184.85677 * 27 25 2 29 29 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46968 * 299.97671 * 1 2 3 31 31 H 1.09001 * 109.47075 * 59.97111 * 1 2 3 32 32 H 1.09007 * 109.49868 * 301.33597 * 4 2 1 33 33 H 1.08990 * 109.49833 * 61.40255 * 4 2 1 34 34 H 1.09005 * 109.50635 * 185.70417 * 5 4 2 35 35 H 1.09004 * 109.43390 * 65.42274 * 5 4 2 36 36 H 0.97006 * 119.99799 * 5.42661 * 9 7 6 37 37 H 1.09004 * 109.44671 * 35.03974 * 10 9 7 38 38 H 1.08988 * 109.49745 * 61.43500 * 11 10 9 39 39 H 1.08997 * 109.49613 * 301.33632 * 11 10 9 40 40 H 1.09005 * 109.58280 * 185.57574 * 12 11 10 41 41 H 1.09007 * 109.58632 * 65.15468 * 12 11 10 42 42 H 0.97001 * 120.00156 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.59268 * 66.17375 * 22 13 12 44 44 H 1.08997 * 109.58983 * 186.60842 * 22 13 12 45 45 H 1.09003 * 109.49666 * 298.56967 * 23 10 9 46 46 H 1.09008 * 109.49624 * 58.65804 * 23 10 9 47 47 H 1.08996 * 109.58615 * 66.43231 * 24 6 5 48 48 H 1.09003 * 109.58478 * 186.71003 * 24 6 5 49 49 H 1.08994 * 109.47344 * 304.85526 * 27 25 2 50 50 H 1.08998 * 109.46966 * 64.86025 * 27 25 2 51 51 H 0.96702 * 113.99605 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5672 -0.6921 1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9614 -2.2578 0.0002 8 8 5.4414 -2.6448 -1.0477 9 7 5.3229 -2.8376 1.1618 10 6 6.3799 -3.8519 1.1765 11 6 7.0252 -3.8959 2.5636 12 6 8.1528 -4.9329 2.5651 13 7 7.6114 -6.2208 2.1103 14 6 7.7794 -7.3529 2.8623 15 1 7.0076 -8.1081 2.8810 16 6 8.9417 -7.5297 3.6003 17 7 9.9324 -6.6711 3.4836 18 14 9.0995 -8.9861 4.7595 19 1 9.6838 -10.1392 4.0287 20 1 9.9832 -8.6209 5.8956 21 1 7.7570 -9.3558 5.2755 22 6 6.8917 -6.2723 0.8305 23 6 5.7782 -5.2202 0.8483 24 6 3.5714 -0.6886 -1.2642 25 6 2.0399 -0.7209 -1.2500 26 1 1.6979 -1.7557 -1.2382 27 6 1.5027 -0.0197 -2.4994 28 8 1.8854 -0.7582 -3.6615 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2205 2.1399 33 1 1.6974 -1.7552 1.2387 34 1 3.9347 -1.2905 2.0980 35 1 3.9098 0.3371 1.3714 36 1 4.8832 -2.5835 1.9883 37 1 7.1354 -3.5995 0.4323 38 1 6.2756 -4.1724 3.3049 39 1 7.4331 -2.9147 2.8063 40 1 8.5498 -5.0394 3.5746 41 1 8.9461 -4.6112 1.8902 42 1 10.7445 -6.7945 3.9996 43 1 7.5820 -6.0598 0.0142 44 1 6.4565 -7.2625 0.6955 45 1 5.0403 -5.4842 1.6059 46 1 5.2984 -5.1816 -0.1297 47 1 3.9143 0.3408 -1.3674 48 1 3.9438 -1.2832 -2.0984 49 1 0.4155 0.0357 -2.4458 50 1 1.9156 0.9874 -2.5567 51 1 1.5778 -0.3709 -4.4925 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598652467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -64.938893 kcal Electronic energy + Delta-G solvation = -29037.959391 eV Core-core repulsion = 25165.437452 eV Total energy + Delta-G solvation = -3872.521939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.56359 -38.80176 -37.30008 -36.57708 -34.41744 -34.13243 -32.16470 -31.60761 -30.03175 -29.38686 -28.41624 -26.26367 -24.86302 -23.59004 -22.39385 -22.12700 -21.80245 -20.38785 -19.69975 -19.17681 -17.95584 -17.67839 -16.67891 -16.31837 -15.49082 -15.25217 -14.88166 -14.78539 -14.62513 -14.37324 -13.95085 -13.85025 -13.63693 -13.52557 -13.43733 -13.03008 -12.90737 -12.59366 -12.48288 -12.23533 -12.14859 -11.99828 -11.48440 -11.36414 -11.25518 -10.97444 -10.84554 -10.73002 -10.66581 -10.63970 -10.40717 -10.25551 -10.19829 -9.99232 -9.87528 -9.72473 -9.45510 -8.79667 -8.47867 -8.34601 -6.53039 -5.75812 -3.26349 2.74907 3.39001 3.41741 3.45331 3.46894 3.79782 4.03400 4.32480 4.39785 4.51205 4.58335 4.62942 4.86553 5.03886 5.05192 5.08958 5.18498 5.23674 5.26084 5.41693 5.45796 5.47370 5.49811 5.55773 5.59573 5.63687 5.71036 5.76635 5.83897 5.91653 5.98138 6.09475 6.17215 6.38040 6.42873 6.46714 6.60394 6.68863 6.71343 6.89582 6.99188 7.08073 7.17558 7.32630 7.40203 7.71213 7.82407 8.16828 8.53791 8.83897 9.26979 9.87030 10.47707 11.32598 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.002449 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.580681 B =11432.495620 C =11757.356765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.635 5.635 7 C 0.705 3.295 8 O -0.586 6.586 9 N -0.740 5.740 10 C 0.169 3.831 11 C -0.147 4.147 12 C 0.177 3.823 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.906 5.906 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.148 3.852 23 C -0.139 4.139 24 C 0.140 3.860 25 C -0.099 4.099 26 H 0.082 0.918 27 C 0.081 3.919 28 O -0.569 6.569 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.389 0.611 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.254 0.746 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.100 0.900 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.552 18.689 -6.207 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.013 4.013 6 N -0.373 5.373 7 C 0.407 3.593 8 O -0.464 6.464 9 N -0.396 5.396 10 C 0.065 3.935 11 C -0.187 4.187 12 C 0.050 3.950 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.179 4.179 24 C 0.017 3.983 25 C -0.118 4.118 26 H 0.101 0.899 27 C 0.002 3.998 28 O -0.374 6.374 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.119 0.881 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.694 17.989 -6.421 26.726 hybrid contribution -0.460 -0.123 0.693 0.841 sum -19.154 17.866 -5.729 26.812 Atomic orbital electron populations 1.21926 0.94912 1.02201 1.01785 1.21072 0.95763 0.99470 0.93975 0.90804 1.21917 0.95328 1.01718 0.97871 1.21513 0.94066 0.99267 0.86407 1.47293 1.46177 1.37039 1.06777 1.15924 0.79491 0.79222 0.84669 1.90913 1.58276 1.66445 1.30749 1.45728 1.42113 1.43716 1.08006 1.20901 0.87651 0.86175 0.98771 1.22568 1.00967 1.00536 0.94598 1.20744 0.90296 0.82555 1.01360 1.44033 1.64555 1.04876 1.18160 1.19159 0.98966 0.97778 1.22308 0.91948 1.25273 0.95018 0.97934 1.01089 1.69943 1.05287 1.36820 1.42948 0.86266 0.77520 0.82523 0.80258 1.21310 1.21632 1.20477 1.20899 0.92067 0.95995 0.88965 1.22381 0.99575 0.95601 1.00358 1.21365 0.91767 0.98628 0.86535 1.21575 0.96270 1.01073 0.92896 0.89941 1.22247 0.98098 0.94042 0.85372 1.86558 1.80312 1.54187 1.16387 0.92431 0.92409 0.92424 0.90413 0.91186 0.90263 0.91450 0.77535 0.90277 0.92389 0.92918 0.89046 0.96136 0.93570 0.96188 0.92676 0.92658 0.92596 0.92326 0.88139 0.93042 0.93605 0.77497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.81 37.16 0.33 -0.51 16 2 C -0.08 -0.56 2.23 -90.58 -0.20 -0.76 16 3 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 4 C -0.13 -0.92 5.35 -26.83 -0.14 -1.06 16 5 C 0.11 0.96 6.40 -3.93 -0.03 0.94 16 6 N -0.63 -7.91 2.98 -178.76 -0.53 -8.44 16 7 C 0.71 11.70 8.25 -86.92 -0.72 10.98 16 8 O -0.59 -12.26 15.42 5.29 0.08 -12.18 16 9 N -0.74 -11.44 4.97 -58.64 -0.29 -11.73 16 10 C 0.17 3.14 2.37 -67.89 -0.16 2.98 16 11 C -0.15 -2.78 5.55 -26.61 -0.15 -2.93 16 12 C 0.18 4.25 5.22 -3.71 -0.02 4.23 16 13 N -0.59 -15.22 2.98 -172.32 -0.51 -15.73 16 14 C -0.25 -7.00 9.56 -15.06 -0.14 -7.15 16 15 H 0.06 1.71 7.84 -52.49 -0.41 1.30 16 16 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 17 N -0.91 -26.37 11.02 55.49 0.61 -25.76 16 18 Si 0.90 21.77 29.56 -169.99 -5.02 16.75 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.33 6.52 -3.71 -0.02 3.31 16 23 C -0.14 -2.72 5.65 -26.61 -0.15 -2.87 16 24 C 0.14 1.62 5.54 -3.71 -0.02 1.60 16 25 C -0.10 -0.88 2.12 -90.50 -0.19 -1.07 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 C 0.08 0.58 6.19 37.16 0.23 0.81 16 28 O -0.57 -5.09 13.31 -35.23 -0.47 -5.56 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 6.30 -51.93 -0.33 -0.05 16 32 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.65 5.58 -51.93 -0.29 0.36 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.39 4.92 6.10 -40.82 -0.25 4.68 16 37 H 0.08 1.66 7.66 -51.93 -0.40 1.26 16 38 H 0.06 1.08 8.14 -51.94 -0.42 0.65 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 1.21 7.93 -51.93 -0.41 0.80 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.11 8.06 -51.92 -0.42 0.69 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.50 6.88 -51.93 -0.36 1.14 16 49 H 0.05 0.30 6.15 -51.93 -0.32 -0.02 16 50 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.38 1.58 9.12 45.56 0.42 1.99 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -34.07 386.57 -9.93 -44.00 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.14 Total: 4.26 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.48 Total: 8.57 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.73 Total: -61.67 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.39 Total: -17.74 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.07 -9.93 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.938 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds