Wall clock time and date at job start Fri Apr 10 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44769 * 2 1 4 4 C 1.53036 * 109.43076 * 119.97745 * 2 1 3 5 5 C 1.53189 * 109.34529 * 58.68697 * 4 2 1 6 6 N 1.46933 * 108.77139 * 54.61692 * 5 4 2 7 7 C 1.34773 * 120.62964 * 126.37129 * 6 5 4 8 8 O 1.21582 * 120.00198 * 174.95320 * 7 6 5 9 9 N 1.34778 * 120.00078 * 354.94979 * 7 6 5 10 10 C 1.46504 * 120.00313 * 184.71031 * 9 7 6 11 11 C 1.53035 * 109.45969 * 275.03013 * 10 9 7 12 12 C 1.53196 * 109.31014 * 178.59780 * 11 10 9 13 13 N 1.46922 * 108.76556 * 54.65861 * 12 11 10 14 14 C 1.36938 * 120.63399 * 126.36003 * 13 12 11 15 15 H 1.08000 * 120.00151 * 216.71950 * 14 13 12 16 16 C 1.38806 * 119.99904 * 36.72475 * 14 13 12 17 17 N 1.31620 * 120.00058 * 11.45141 * 16 14 13 18 18 Si 1.86798 * 120.00263 * 191.46015 * 16 14 13 19 19 H 1.48499 * 109.47430 * 89.99389 * 18 16 14 20 20 H 1.48499 * 109.47379 * 210.00020 * 18 16 14 21 21 H 1.48507 * 109.46750 * 329.99534 * 18 16 14 22 22 C 1.46931 * 118.73642 * 306.38018 * 13 12 11 23 23 C 1.53041 * 109.45997 * 154.97275 * 10 9 7 24 24 C 1.46920 * 118.73792 * 306.39392 * 6 5 4 25 25 C 1.53037 * 109.46140 * 240.03008 * 2 1 3 26 26 H 1.09001 * 109.49913 * 181.36365 * 25 2 1 27 27 C 1.52994 * 109.49735 * 61.29429 * 25 2 1 28 28 O 1.42904 * 109.47015 * 175.06298 * 27 25 2 29 29 H 1.09006 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47225 * 299.96959 * 1 2 3 31 31 H 1.09003 * 109.47114 * 59.97575 * 1 2 3 32 32 H 1.09001 * 109.49664 * 298.71871 * 4 2 1 33 33 H 1.09005 * 109.47337 * 178.64471 * 4 2 1 34 34 H 1.08994 * 109.58870 * 294.83574 * 5 4 2 35 35 H 1.08998 * 109.70677 * 174.47555 * 5 4 2 36 36 H 0.97000 * 120.00008 * 4.71826 * 9 7 6 37 37 H 1.08999 * 109.45831 * 35.00245 * 10 9 7 38 38 H 1.08998 * 109.49986 * 298.56236 * 11 10 9 39 39 H 1.09001 * 109.49910 * 58.66135 * 11 10 9 40 40 H 1.09002 * 109.59856 * 294.86523 * 12 11 10 41 41 H 1.09001 * 109.58838 * 174.43692 * 12 11 10 42 42 H 0.97001 * 119.99964 * 180.02562 * 17 16 14 43 43 H 1.08991 * 109.59048 * 293.82206 * 22 13 12 44 44 H 1.09001 * 109.58470 * 173.39481 * 22 13 12 45 45 H 1.09005 * 109.49809 * 301.34029 * 23 10 9 46 46 H 1.09000 * 109.49390 * 61.40358 * 23 10 9 47 47 H 1.08993 * 109.58950 * 293.81986 * 24 6 5 48 48 H 1.09005 * 109.58399 * 173.39269 * 24 6 5 49 49 H 1.08999 * 109.47325 * 295.06346 * 27 25 2 50 50 H 1.09000 * 109.47152 * 55.06781 * 27 25 2 51 51 H 0.96704 * 114.00198 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7211 1.2501 5 6 1.4995 -2.1547 1.2641 6 7 1.8632 -2.8092 -0.0002 7 6 2.5176 -3.9874 -0.0001 8 8 2.7319 -4.5638 -1.0489 9 7 2.9345 -4.5266 1.1626 10 6 3.7350 -5.7536 1.1557 11 6 2.8059 -6.9681 1.0941 12 6 3.6471 -8.2477 1.0518 13 7 4.5651 -8.2482 2.1989 14 6 4.6043 -9.3115 3.0608 15 1 4.7575 -9.1453 4.1169 16 6 4.4471 -10.6031 2.5772 17 7 4.4865 -10.8299 1.2813 18 14 4.1796 -12.0193 3.7655 19 1 2.7247 -12.1975 4.0038 20 1 4.7425 -13.2652 3.1856 21 1 4.8591 -11.7212 5.0519 22 6 5.4400 -7.0857 2.4039 23 6 4.5788 -5.8190 2.4309 24 6 1.5002 -2.1545 -1.2644 25 6 2.0399 -0.7208 -1.2500 26 1 3.1296 -0.7424 -1.2385 27 6 1.5569 0.0192 -2.4989 28 8 2.1269 -0.5858 -3.6613 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6945 -0.1940 2.1398 33 1 3.1289 -0.7426 1.2388 34 1 0.4146 -2.1359 1.3668 35 1 1.9361 -2.7036 2.0985 36 1 2.7045 -4.1023 2.0040 37 1 4.3914 -5.7540 0.2856 38 1 2.1663 -6.9820 1.9766 39 1 2.1886 -6.9089 0.1977 40 1 4.2202 -8.2780 0.1250 41 1 2.9924 -9.1174 1.1074 42 1 4.3763 -11.7324 0.9433 43 1 6.1593 -7.0212 1.5876 44 1 5.9682 -7.1886 3.3519 45 1 5.2235 -4.9418 2.4860 46 1 3.9222 -5.8433 3.3006 47 1 0.4154 -2.1356 -1.3678 48 1 1.9394 -2.7018 -2.0985 49 1 0.4698 -0.0362 -2.5565 50 1 1.8652 1.0633 -2.4446 51 1 1.8631 -0.1672 -4.4922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598652469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:02 Heat of formation + Delta-G solvation = -62.484202 kcal Electronic energy + Delta-G solvation = -29175.038058 eV Core-core repulsion = 25302.622562 eV Total energy + Delta-G solvation = -3872.415496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.68355 -38.88253 -37.28746 -36.63650 -34.39490 -33.85914 -32.10277 -31.60531 -29.93526 -29.39026 -28.14072 -26.18811 -25.19824 -24.42242 -22.34088 -22.13786 -21.87803 -20.10402 -19.48282 -18.67274 -17.89265 -17.64357 -16.68303 -16.32282 -15.68525 -15.37542 -15.16499 -14.77934 -14.55177 -14.38045 -14.11365 -13.82604 -13.65587 -13.49599 -13.43431 -13.01131 -12.91420 -12.51583 -12.40533 -12.22513 -12.06160 -11.89259 -11.48200 -11.37387 -11.17801 -11.04826 -10.88744 -10.76559 -10.74488 -10.67042 -10.31416 -10.24288 -10.14816 -10.05134 -9.86028 -9.72163 -9.46003 -8.75412 -8.46779 -8.29566 -6.50120 -5.74353 -3.27435 2.75465 3.39736 3.43861 3.46067 3.47589 3.80451 4.03375 4.32468 4.41980 4.51897 4.63687 4.65021 4.87013 4.96000 5.03353 5.09439 5.15793 5.22433 5.25324 5.38592 5.45371 5.46301 5.53484 5.54481 5.57910 5.66079 5.73617 5.75733 5.82512 5.91747 5.96110 6.09978 6.17247 6.31866 6.41762 6.50340 6.54086 6.69558 6.74385 6.87031 6.99097 7.04055 7.17160 7.33283 7.43210 7.71635 7.84932 8.17410 8.55554 8.85891 9.27185 9.87160 10.49851 11.33661 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002492 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.645430 B =11235.192903 C =11646.207363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.129 4.129 5 C 0.110 3.890 6 N -0.634 5.634 7 C 0.705 3.295 8 O -0.584 6.584 9 N -0.741 5.741 10 C 0.169 3.831 11 C -0.147 4.147 12 C 0.179 3.821 13 N -0.591 5.591 14 C -0.260 4.260 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.898 5.898 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.149 3.851 23 C -0.138 4.138 24 C 0.140 3.860 25 C -0.099 4.099 26 H 0.082 0.918 27 C 0.083 3.917 28 O -0.569 6.569 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.049 0.951 50 H 0.046 0.954 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 26.600 -2.321 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.014 4.014 6 N -0.372 5.372 7 C 0.407 3.593 8 O -0.461 6.461 9 N -0.396 5.396 10 C 0.065 3.935 11 C -0.187 4.187 12 C 0.052 3.948 13 N -0.314 5.314 14 C -0.390 4.390 15 H 0.079 0.921 16 C -0.190 4.190 17 N -0.541 5.541 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.022 3.978 23 C -0.178 4.178 24 C 0.017 3.983 25 C -0.118 4.118 26 H 0.100 0.900 27 C 0.004 3.996 28 O -0.374 6.374 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.224 0.776 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.118 0.882 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.271 25.565 -2.727 27.008 hybrid contribution -0.618 -0.044 0.623 0.878 sum -8.889 25.521 -2.104 27.106 Atomic orbital electron populations 1.22033 0.95004 1.02536 1.01813 1.21041 0.96095 0.99116 0.93967 0.90849 1.21935 1.01468 0.95470 0.97855 1.21621 1.00153 0.93221 0.86388 1.47268 1.61645 1.21565 1.06739 1.15910 0.78371 0.80381 0.84678 1.90928 1.62197 1.62125 1.30859 1.45703 1.57984 1.29356 1.06594 1.20884 0.91796 0.81876 0.98923 1.22571 0.98761 0.96898 1.00480 1.20661 0.91303 0.93385 0.89413 1.43996 1.40481 1.16655 1.30259 1.19086 1.46546 0.84510 0.88876 0.92120 1.25314 1.00226 0.97719 0.95694 1.70004 1.52404 1.20252 1.11406 0.86305 0.77928 0.82064 0.80481 1.21387 1.21674 1.20351 1.20853 0.91634 0.86324 0.98966 1.22347 0.99016 0.99857 0.96588 1.21383 0.99004 0.91437 0.86500 1.21543 1.01863 0.95519 0.92910 0.89996 1.22204 0.96643 0.95323 0.85400 1.86560 1.74021 1.60479 1.16387 0.91827 0.92412 0.92525 0.90496 0.91206 0.91257 0.90423 0.77644 0.90231 0.92939 0.92737 0.95937 0.90471 0.93542 0.96198 0.92379 0.92789 0.92058 0.92087 0.88226 0.93265 0.93561 0.77476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 8.11 37.16 0.30 -0.58 16 2 C -0.08 -0.55 2.71 -90.58 -0.25 -0.79 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.13 -0.89 5.62 -26.62 -0.15 -1.03 16 5 C 0.11 0.95 5.97 -3.71 -0.02 0.92 16 6 N -0.63 -7.90 2.97 -178.50 -0.53 -8.43 16 7 C 0.71 11.79 8.26 -86.92 -0.72 11.07 16 8 O -0.58 -12.46 15.45 5.29 0.08 -12.37 16 9 N -0.74 -11.37 4.99 -58.64 -0.29 -11.67 16 10 C 0.17 3.13 2.38 -67.89 -0.16 2.96 16 11 C -0.15 -3.07 5.65 -26.61 -0.15 -3.23 16 12 C 0.18 4.49 5.23 -3.71 -0.02 4.47 16 13 N -0.59 -15.14 2.95 -172.32 -0.51 -15.64 16 14 C -0.26 -7.23 9.51 -15.06 -0.14 -7.37 16 15 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 16 C 0.01 0.30 5.00 -17.43 -0.09 0.21 16 17 N -0.90 -26.77 11.52 55.49 0.64 -26.13 16 18 Si 0.90 21.91 29.57 -169.99 -5.03 16.88 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 23 C -0.14 -2.39 5.55 -26.61 -0.15 -2.53 16 24 C 0.14 1.63 5.07 -3.71 -0.02 1.61 16 25 C -0.10 -0.88 2.35 -90.50 -0.21 -1.10 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 C 0.08 0.60 5.96 37.15 0.22 0.82 16 28 O -0.57 -5.16 13.31 -35.23 -0.47 -5.63 16 29 H 0.06 0.43 4.98 -51.93 -0.26 0.17 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 35 H 0.08 0.62 5.56 -51.93 -0.29 0.33 16 36 H 0.39 4.78 6.06 -40.82 -0.25 4.53 16 37 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 2.14 6.56 -51.93 -0.34 1.80 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.63 6.70 -51.93 -0.35 0.29 16 48 H 0.10 1.51 6.88 -51.93 -0.36 1.15 16 49 H 0.05 0.30 6.73 -51.93 -0.35 -0.05 16 50 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.38 1.62 9.12 45.56 0.42 2.04 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -34.71 381.23 -9.83 -44.54 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.89 Total: 4.11 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.58 Total: 8.59 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.69 Total: -61.87 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.39 Total: -18.00 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.71 -9.83 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.943 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds