Wall clock time and date at job start Fri Apr 10 2020 18:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.44769 * 2 1 4 4 C 1.53036 * 109.43076 * 119.97745 * 2 1 3 5 5 C 1.53189 * 109.34529 * 58.68697 * 4 2 1 6 6 N 1.46933 * 108.77139 * 54.61692 * 5 4 2 7 7 C 1.34773 * 120.62964 * 126.37129 * 6 5 4 8 8 O 1.21582 * 120.00198 * 174.95320 * 7 6 5 9 9 N 1.34778 * 120.00078 * 354.94979 * 7 6 5 10 10 C 1.46504 * 120.00313 * 184.71031 * 9 7 6 11 11 C 1.53035 * 109.45969 * 275.03013 * 10 9 7 12 12 C 1.53196 * 109.31014 * 178.59780 * 11 10 9 13 13 N 1.46922 * 108.76556 * 54.65861 * 12 11 10 14 14 C 1.36938 * 120.63399 * 126.36003 * 13 12 11 15 15 H 1.08000 * 120.00151 * 216.71950 * 14 13 12 16 16 C 1.38806 * 119.99904 * 36.72475 * 14 13 12 17 17 N 1.31620 * 120.00058 * 11.45141 * 16 14 13 18 18 Si 1.86798 * 120.00263 * 191.46015 * 16 14 13 19 19 H 1.48499 * 109.47430 * 89.99389 * 18 16 14 20 20 H 1.48499 * 109.47379 * 210.00020 * 18 16 14 21 21 H 1.48507 * 109.46750 * 329.99534 * 18 16 14 22 22 C 1.46931 * 118.73642 * 306.38018 * 13 12 11 23 23 C 1.53041 * 109.45997 * 154.97275 * 10 9 7 24 24 C 1.46920 * 118.73792 * 306.39392 * 6 5 4 25 25 C 1.53037 * 109.46140 * 240.03008 * 2 1 3 26 26 H 1.09001 * 109.49913 * 181.36365 * 25 2 1 27 27 C 1.52994 * 109.49735 * 61.29429 * 25 2 1 28 28 O 1.42904 * 109.47015 * 175.06298 * 27 25 2 29 29 H 1.09006 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47225 * 299.96959 * 1 2 3 31 31 H 1.09003 * 109.47114 * 59.97575 * 1 2 3 32 32 H 1.09001 * 109.49664 * 298.71871 * 4 2 1 33 33 H 1.09005 * 109.47337 * 178.64471 * 4 2 1 34 34 H 1.08994 * 109.58870 * 294.83574 * 5 4 2 35 35 H 1.08998 * 109.70677 * 174.47555 * 5 4 2 36 36 H 0.97000 * 120.00008 * 4.71826 * 9 7 6 37 37 H 1.08999 * 109.45831 * 35.00245 * 10 9 7 38 38 H 1.08998 * 109.49986 * 298.56236 * 11 10 9 39 39 H 1.09001 * 109.49910 * 58.66135 * 11 10 9 40 40 H 1.09002 * 109.59856 * 294.86523 * 12 11 10 41 41 H 1.09001 * 109.58838 * 174.43692 * 12 11 10 42 42 H 0.97001 * 119.99964 * 180.02562 * 17 16 14 43 43 H 1.08991 * 109.59048 * 293.82206 * 22 13 12 44 44 H 1.09001 * 109.58470 * 173.39481 * 22 13 12 45 45 H 1.09005 * 109.49809 * 301.34029 * 23 10 9 46 46 H 1.09000 * 109.49390 * 61.40358 * 23 10 9 47 47 H 1.08993 * 109.58950 * 293.81986 * 24 6 5 48 48 H 1.09005 * 109.58399 * 173.39269 * 24 6 5 49 49 H 1.08999 * 109.47325 * 295.06346 * 27 25 2 50 50 H 1.09000 * 109.47152 * 55.06781 * 27 25 2 51 51 H 0.96704 * 114.00198 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0391 -0.7211 1.2501 5 6 1.4995 -2.1547 1.2641 6 7 1.8632 -2.8092 -0.0002 7 6 2.5176 -3.9874 -0.0001 8 8 2.7319 -4.5638 -1.0489 9 7 2.9345 -4.5266 1.1626 10 6 3.7350 -5.7536 1.1557 11 6 2.8059 -6.9681 1.0941 12 6 3.6471 -8.2477 1.0518 13 7 4.5651 -8.2482 2.1989 14 6 4.6043 -9.3115 3.0608 15 1 4.7575 -9.1453 4.1169 16 6 4.4471 -10.6031 2.5772 17 7 4.4865 -10.8299 1.2813 18 14 4.1796 -12.0193 3.7655 19 1 2.7247 -12.1975 4.0038 20 1 4.7425 -13.2652 3.1856 21 1 4.8591 -11.7212 5.0519 22 6 5.4400 -7.0857 2.4039 23 6 4.5788 -5.8190 2.4309 24 6 1.5002 -2.1545 -1.2644 25 6 2.0399 -0.7208 -1.2500 26 1 3.1296 -0.7424 -1.2385 27 6 1.5569 0.0192 -2.4989 28 8 2.1269 -0.5858 -3.6613 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6945 -0.1940 2.1398 33 1 3.1289 -0.7426 1.2388 34 1 0.4146 -2.1359 1.3668 35 1 1.9361 -2.7036 2.0985 36 1 2.7045 -4.1023 2.0040 37 1 4.3914 -5.7540 0.2856 38 1 2.1663 -6.9820 1.9766 39 1 2.1886 -6.9089 0.1977 40 1 4.2202 -8.2780 0.1250 41 1 2.9924 -9.1174 1.1074 42 1 4.3763 -11.7324 0.9433 43 1 6.1593 -7.0212 1.5876 44 1 5.9682 -7.1886 3.3519 45 1 5.2235 -4.9418 2.4860 46 1 3.9222 -5.8433 3.3006 47 1 0.4154 -2.1356 -1.3678 48 1 1.9394 -2.7018 -2.0985 49 1 0.4698 -0.0362 -2.5565 50 1 1.8652 1.0633 -2.4446 51 1 1.8631 -0.1672 -4.4922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598652469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:01 Heat of formation + Delta-G solvation = -88.099780 kcal Electronic energy + Delta-G solvation = -29176.148832 eV Core-core repulsion = 25302.622562 eV Total energy + Delta-G solvation = -3873.526271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74056 -39.98743 -38.82415 -37.39460 -36.04073 -34.91317 -33.76286 -32.50115 -31.71676 -31.12538 -28.72923 -27.35477 -26.42158 -25.61706 -23.90168 -23.58919 -23.01304 -21.33228 -21.07180 -19.68856 -19.01234 -18.52408 -18.25695 -17.54147 -16.85183 -16.46782 -16.41698 -16.08383 -15.64302 -15.37629 -15.36992 -15.16510 -14.92929 -14.77478 -14.68752 -14.44935 -14.08638 -13.98833 -13.70128 -13.17155 -13.02098 -12.90343 -12.74578 -12.66203 -12.62623 -12.52883 -12.15780 -12.07020 -12.01207 -11.89058 -11.76002 -11.56518 -11.47422 -11.38855 -11.36816 -11.05496 -10.82128 -10.59482 -10.12867 -9.42119 -8.59752 -7.87611 -5.45283 1.47228 1.48290 1.57973 1.61433 2.13240 2.50430 2.91879 3.28990 3.30600 3.67086 3.72618 3.78015 3.87451 4.01354 4.03600 4.08954 4.22013 4.32742 4.37155 4.44073 4.47240 4.51498 4.57878 4.63377 4.66861 4.70868 4.77710 4.80634 4.87740 4.92923 5.00811 5.04259 5.07824 5.10531 5.14360 5.15560 5.25744 5.31460 5.35149 5.40546 5.55058 5.57254 5.60768 5.64234 5.66143 5.96110 6.42954 6.94535 6.99975 7.14554 7.58374 7.81428 8.40180 9.18834 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.002492 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.645430 B =11235.192903 C =11646.207363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.101 3.899 6 N -0.626 5.626 7 C 0.697 3.303 8 O -0.640 6.640 9 N -0.725 5.725 10 C 0.181 3.819 11 C -0.129 4.129 12 C 0.190 3.810 13 N -0.608 5.608 14 C -0.268 4.268 15 H 0.071 0.929 16 C -0.048 4.048 17 N -0.938 5.938 18 Si 0.972 3.028 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.262 1.262 22 C 0.143 3.857 23 C -0.119 4.119 24 C 0.139 3.861 25 C -0.094 4.094 26 H 0.055 0.945 27 C 0.082 3.918 28 O -0.601 6.601 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.040 0.960 40 H -0.012 1.012 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.008 0.992 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 29.792 0.412 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.163 4.163 5 C -0.020 4.020 6 N -0.363 5.363 7 C 0.399 3.601 8 O -0.521 6.521 9 N -0.382 5.382 10 C 0.075 3.925 11 C -0.170 4.170 12 C 0.063 3.937 13 N -0.331 5.331 14 C -0.398 4.398 15 H 0.088 0.912 16 C -0.244 4.244 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.186 1.186 22 C 0.017 3.983 23 C -0.158 4.158 24 C 0.016 3.984 25 C -0.114 4.114 26 H 0.074 0.926 27 C 0.004 3.996 28 O -0.409 6.409 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.006 0.994 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.497 28.858 0.058 30.381 hybrid contribution -0.241 -0.969 -0.291 1.040 sum -9.738 27.889 -0.233 29.541 Atomic orbital electron populations 1.22013 0.93866 1.02118 1.03102 1.21048 0.96898 0.99505 0.92216 0.89046 1.21943 1.00799 0.94310 0.99241 1.21982 1.01488 0.94195 0.84375 1.47330 1.60069 1.20162 1.08719 1.16160 0.78594 0.81352 0.84024 1.90896 1.64362 1.64000 1.32847 1.45280 1.57438 1.28216 1.07290 1.20498 0.91191 0.82069 0.98701 1.22310 0.98368 0.96115 1.00165 1.20343 0.90872 0.94224 0.88240 1.44237 1.41519 1.17636 1.29744 1.19495 1.45405 0.85242 0.89651 0.91165 1.26162 1.00563 1.00480 0.97203 1.70186 1.54164 1.20384 1.13494 0.85211 0.77754 0.78326 0.78778 1.21100 1.22302 1.18622 1.21041 0.91744 0.86501 0.99017 1.22133 0.98818 0.98914 0.95985 1.21416 0.99579 0.92555 0.84821 1.21518 1.00191 0.94130 0.95527 0.92636 1.22307 0.97444 0.95824 0.84046 1.86522 1.74755 1.61700 1.17957 0.93016 0.90813 0.91666 0.87569 0.92292 0.89464 0.89552 0.75316 0.93224 0.91931 0.94101 0.99400 0.93813 0.94109 0.97366 0.91191 0.89204 0.90433 0.90605 0.92589 0.91655 0.91431 0.75377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.11 71.98 0.58 -0.57 16 2 C -0.08 -0.78 2.71 -10.77 -0.03 -0.81 16 3 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.12 -1.28 5.62 30.67 0.17 -1.10 16 5 C 0.10 1.45 5.97 86.36 0.52 1.97 16 6 N -0.63 -15.17 2.97 -836.92 -2.49 -17.66 16 7 C 0.70 23.56 8.26 179.05 1.48 25.03 16 8 O -0.64 -28.79 15.45 -3.98 -0.06 -28.85 16 9 N -0.73 -21.46 4.99 -457.69 -2.28 -23.75 16 10 C 0.18 6.66 2.38 45.02 0.11 6.77 16 11 C -0.13 -5.54 5.65 30.67 0.17 -5.37 16 12 C 0.19 10.02 5.23 86.36 0.45 10.47 16 13 N -0.61 -31.59 2.95 -699.10 -2.06 -33.65 16 14 C -0.27 -14.92 9.51 84.03 0.80 -14.12 16 15 H 0.07 3.73 7.85 -2.91 -0.02 3.70 16 16 C -0.05 -2.76 5.00 84.86 0.42 -2.33 16 17 N -0.94 -58.08 11.52 21.65 0.25 -57.83 16 18 Si 0.97 45.49 29.57 68.60 2.03 47.52 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 C 0.14 5.99 6.52 86.36 0.56 6.55 16 23 C -0.12 -3.84 5.55 30.67 0.17 -3.67 16 24 C 0.14 3.26 5.07 86.37 0.44 3.70 16 25 C -0.09 -1.58 2.35 -10.72 -0.03 -1.60 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 C 0.08 1.05 5.96 71.98 0.43 1.48 16 28 O -0.60 -10.82 13.31 -148.98 -1.98 -12.80 16 29 H 0.05 0.52 4.98 -2.38 -0.01 0.51 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.40 6.57 -2.39 -0.02 0.38 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 34 H 0.09 1.01 6.69 -2.39 -0.02 0.99 16 35 H 0.09 1.08 5.56 -2.39 -0.01 1.07 16 36 H 0.41 8.87 6.06 -92.71 -0.56 8.31 16 37 H 0.05 2.16 7.65 -2.39 -0.02 2.14 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.04 2.56 6.56 -2.39 -0.02 2.55 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 45 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.08 1.52 6.70 -2.39 -0.02 1.51 16 48 H 0.06 1.82 6.88 -2.38 -0.02 1.80 16 49 H 0.07 0.63 6.73 -2.39 -0.02 0.61 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.40 3.21 9.12 -74.05 -0.68 2.54 16 Total: -1.00 -80.74 381.23 -0.65 -81.39 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.30 Total: 19.24 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 6.25 Total: 26.39 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -6.58 Total: -132.89 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.04 Total: -41.65 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -80.74 -0.65 -81.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598652469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.711 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds