Wall clock time and date at job start Fri Apr 10 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 C 1.52995 * 109.47306 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46983 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00283 * 269.99567 * 5 4 3 7 7 C 1.52995 * 109.47480 * 265.22821 * 6 5 4 8 8 C 1.34781 * 120.00247 * 89.99911 * 5 4 3 9 9 O 1.21341 * 119.99845 * 5.17679 * 8 5 4 10 10 C 1.49452 * 120.00058 * 185.17560 * 8 5 4 11 11 O 1.21349 * 120.00127 * 274.73069 * 10 8 5 12 12 N 1.34781 * 119.99823 * 95.00147 * 10 8 5 13 13 C 1.47078 * 120.88155 * 4.59625 * 12 10 8 14 14 C 1.53692 * 108.28152 * 128.74956 * 13 12 10 15 15 N 1.46903 * 109.25658 * 54.08143 * 14 13 12 16 16 C 1.46899 * 111.00050 * 172.60793 * 15 14 13 17 17 C 1.50691 * 109.47464 * 294.30272 * 16 15 14 18 18 H 1.08010 * 119.99991 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00553 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99229 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00142 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47377 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47409 * 120.00090 * 21 19 17 24 24 H 1.48504 * 109.47019 * 240.00000 * 21 19 17 25 25 C 1.46900 * 111.26459 * 296.75867 * 15 14 13 26 26 C 1.47080 * 120.88403 * 184.86609 * 12 10 8 27 27 H 1.09006 * 109.46856 * 299.99870 * 1 2 3 28 28 H 1.09004 * 109.47468 * 59.99625 * 1 2 3 29 29 H 1.08995 * 109.47158 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46889 * 240.00604 * 2 1 3 31 31 H 1.08999 * 109.47495 * 119.99890 * 2 1 3 32 32 H 1.09001 * 109.46895 * 59.99530 * 3 2 1 33 33 H 1.09004 * 109.47165 * 300.00560 * 3 2 1 34 34 H 1.08993 * 109.47391 * 60.00121 * 4 3 2 35 35 H 1.08999 * 109.47169 * 299.99693 * 4 3 2 36 36 H 1.09002 * 109.46599 * 25.22148 * 6 5 4 37 37 H 1.08993 * 109.47739 * 145.22001 * 6 5 4 38 38 H 1.09002 * 109.47236 * 59.98885 * 7 6 5 39 39 H 1.08996 * 109.47579 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.46655 * 299.99292 * 7 6 5 41 41 H 1.09003 * 109.62743 * 248.51938 * 13 12 10 42 42 H 1.09004 * 109.62990 * 9.09168 * 13 12 10 43 43 H 1.09001 * 109.64574 * 294.07940 * 14 13 12 44 44 H 1.09004 * 109.42547 * 173.94686 * 14 13 12 45 45 H 1.09007 * 109.47032 * 54.30261 * 16 15 14 46 46 H 1.08995 * 109.46698 * 174.29635 * 16 15 14 47 47 H 0.97000 * 119.99430 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.49311 * 303.14252 * 25 15 14 49 49 H 1.09008 * 109.48953 * 183.06204 * 25 15 14 50 50 H 1.09006 * 109.62494 * 350.90050 * 26 12 10 51 51 H 1.08996 * 109.63020 * 111.47729 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3020 3.5151 -1.2684 7 6 5.7767 3.3747 -1.6508 8 6 4.2834 3.4584 1.1675 9 8 4.1722 2.8577 2.2159 10 6 4.6699 4.9021 1.1707 11 8 5.8337 5.2189 1.0377 12 7 3.7265 5.8520 1.3270 13 6 2.3268 5.4888 1.5957 14 6 1.8517 6.2780 2.8259 15 7 2.0894 7.7106 2.6040 16 6 1.4919 8.5159 3.6775 17 6 -0.0083 8.3824 3.6301 18 1 -0.4718 7.7617 2.8775 19 6 -0.7896 9.0534 4.5469 20 7 -0.2252 9.8097 5.4630 21 14 -2.6492 8.8873 4.4885 22 1 -3.0308 7.9851 3.3725 23 1 -3.1361 8.3211 5.7721 24 1 -3.2591 10.2242 4.2742 25 6 3.5235 7.9976 2.4663 26 6 4.0682 7.2790 1.2274 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.6810 3.0737 -2.0480 37 1 4.0536 4.5709 -1.1604 38 1 6.0251 2.3189 -1.7588 39 1 5.9580 3.8887 -2.5947 40 1 6.3977 3.8161 -0.8712 41 1 1.7105 5.7430 0.7334 42 1 2.2579 4.4195 1.7960 43 1 2.4031 5.9501 3.7071 44 1 0.7862 6.1054 2.9780 45 1 1.8577 8.1641 4.6422 46 1 1.7681 9.5618 3.5437 47 1 -0.7748 10.2815 6.1082 48 1 4.0516 7.6457 3.3526 49 1 3.6705 9.0722 2.3575 50 1 5.1514 7.3940 1.1841 51 1 3.6162 7.7021 0.3303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:06 Heat of formation + Delta-G solvation = -68.965762 kcal Electronic energy + Delta-G solvation = -29234.304799 eV Core-core repulsion = 25361.608242 eV Total energy + Delta-G solvation = -3872.696557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03173 -39.08164 -37.54467 -36.78648 -35.06585 -34.53889 -32.46985 -31.26206 -30.95969 -29.27206 -28.34957 -26.18076 -24.89420 -23.95078 -23.41612 -22.73280 -21.66239 -21.28342 -20.08785 -18.58244 -17.89660 -17.13369 -16.60098 -16.36138 -15.72399 -15.50099 -15.01049 -14.84933 -14.72553 -14.47545 -14.13935 -14.01382 -13.89478 -13.77033 -13.61432 -13.38608 -13.09523 -12.86125 -12.67544 -12.33903 -12.30211 -11.98266 -11.72890 -11.60946 -11.50146 -11.35716 -11.34475 -11.22457 -11.15036 -10.98410 -10.84617 -10.78528 -10.65935 -10.55064 -9.92890 -9.53914 -9.30620 -9.07451 -8.68072 -8.49103 -7.38727 -6.08320 -4.10441 2.00114 2.08329 2.54888 3.21162 3.27511 3.35213 3.38826 4.04046 4.36838 4.52107 4.57741 4.62962 4.73584 4.80855 4.89915 4.96072 5.07558 5.15360 5.25658 5.26265 5.31335 5.33484 5.37292 5.42212 5.49460 5.53696 5.53939 5.57868 5.63559 5.67125 5.75759 5.86520 5.88475 5.94355 5.96782 6.03620 6.18666 6.21938 6.37086 6.41281 6.51927 6.87029 7.15731 7.21220 7.27193 7.65789 7.70945 7.82226 7.96603 8.07821 8.43600 8.96675 9.54224 11.02585 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.003452 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.036623 B = 8109.473226 C = 9968.361807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.113 3.887 5 N -0.600 5.600 6 C 0.103 3.897 7 C -0.176 4.176 8 C 0.520 3.480 9 O -0.510 6.510 10 C 0.514 3.486 11 O -0.523 6.523 12 N -0.589 5.589 13 C 0.108 3.892 14 C 0.052 3.948 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.039 3.961 26 C 0.117 3.883 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.100 0.900 45 H -0.008 1.008 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.029 0.971 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -16.278 -16.135 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.176 4.176 4 C -0.009 4.009 5 N -0.335 5.335 6 C -0.020 4.020 7 C -0.234 4.234 8 C 0.303 3.697 9 O -0.383 6.383 10 C 0.297 3.703 11 O -0.399 6.399 12 N -0.324 5.324 13 C -0.015 4.015 14 C -0.077 4.077 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.090 4.090 26 C -0.005 4.005 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.118 0.882 45 H 0.010 0.990 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.103 0.897 50 H 0.109 0.891 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.983 -16.169 -15.909 23.734 hybrid contribution -0.665 -0.149 0.886 1.117 sum 6.319 -16.318 -15.024 23.063 Atomic orbital electron populations 1.21763 0.95480 1.01634 1.02157 1.21430 0.96265 0.96040 1.02086 1.22013 0.94884 0.97656 1.03040 1.21612 0.94237 0.81411 1.03664 1.48020 1.64995 1.14693 1.05753 1.21659 0.97509 0.97800 0.84998 1.22264 0.96050 1.02407 1.02691 1.20352 0.76837 0.88185 0.84361 1.90808 1.49659 1.66840 1.31033 1.20134 0.86211 0.86253 0.77739 1.90759 1.17612 1.81532 1.49967 1.48279 1.09038 1.06718 1.68325 1.22198 0.80112 0.99192 0.99966 1.22382 1.02567 0.88965 0.93837 1.62114 1.09971 1.04847 1.49098 1.19737 0.94692 0.92458 0.86257 1.21159 0.90695 1.28674 1.14309 0.91748 1.24997 0.99002 0.95250 0.95326 1.69969 1.35473 1.30475 1.17686 0.86441 0.85209 0.77905 0.77852 1.19632 1.21095 1.20991 1.22418 0.90602 1.00271 0.95738 1.21908 1.01223 0.77928 0.99414 0.92430 0.92709 0.92751 0.92006 0.91727 0.91196 0.91539 0.90136 0.89473 0.89440 0.90428 0.92327 0.91234 0.91032 0.90001 0.90488 0.95274 0.88191 0.98994 0.94909 0.92893 0.95261 0.89692 0.89058 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.14 -1.11 5.54 -26.73 -0.15 -1.26 16 4 C 0.11 0.97 5.43 -4.05 -0.02 0.95 16 5 N -0.60 -6.38 2.48 -174.21 -0.43 -6.82 16 6 C 0.10 0.86 5.94 -4.04 -0.02 0.84 16 7 C -0.18 -1.46 10.21 37.16 0.38 -1.08 16 8 C 0.52 7.61 5.60 -11.58 -0.06 7.54 16 9 O -0.51 -8.95 16.43 5.50 0.09 -8.86 16 10 C 0.51 8.08 5.69 -11.58 -0.07 8.01 16 11 O -0.52 -9.18 15.37 5.50 0.08 -9.10 16 12 N -0.59 -8.93 3.00 -172.69 -0.52 -9.45 16 13 C 0.11 1.61 6.51 -3.37 -0.02 1.59 16 14 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 15 N -0.54 -10.95 4.62 -235.47 -1.09 -12.04 16 16 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 17 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 18 H 0.06 1.70 7.13 -52.48 -0.37 1.32 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 26 C 0.12 1.72 6.61 -3.60 -0.02 1.70 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 35 H 0.09 0.88 7.36 -51.93 -0.38 0.50 16 36 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 37 H 0.08 0.72 6.97 -51.93 -0.36 0.36 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.81 6.93 -51.93 -0.36 0.45 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.10 6.29 -51.93 -0.33 0.77 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 45 H -0.01 -0.21 8.13 -51.93 -0.42 -0.64 16 46 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 1.42 7.99 -51.92 -0.41 1.00 16 50 H 0.09 1.31 7.04 -51.93 -0.37 0.94 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -32.16 405.83 -9.50 -41.66 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -9.23 Total: -2.55 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -0.23 Total: 10.45 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.30 Total: -53.76 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.16 -9.50 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.304 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds