Wall clock time and date at job start Fri Apr 10 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46498 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00255 * 90.00116 * 4 3 2 6 6 C 1.53004 * 109.47303 * 95.98499 * 5 4 3 7 7 C 1.52994 * 109.47458 * 180.02562 * 6 5 4 8 8 C 1.34785 * 119.99996 * 269.72476 * 4 3 2 9 9 O 1.21345 * 120.00019 * 5.42762 * 8 4 3 10 10 C 1.49452 * 119.99782 * 185.42356 * 8 4 3 11 11 O 1.21341 * 120.00296 * 3.37008 * 10 8 4 12 12 N 1.34780 * 119.99787 * 183.37560 * 10 8 4 13 13 C 1.47071 * 120.88128 * 172.92804 * 12 10 8 14 14 C 1.53703 * 108.27797 * 128.75272 * 13 12 10 15 15 N 1.46897 * 109.25246 * 54.08305 * 14 13 12 16 16 C 1.46901 * 110.99773 * 172.61031 * 15 14 13 17 17 C 1.50700 * 109.47063 * 294.30102 * 16 15 14 18 18 H 1.08002 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99734 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99689 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47070 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47184 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.47414 * 240.00082 * 21 19 17 25 25 C 1.46906 * 111.26908 * 296.75660 * 15 14 13 26 26 C 1.47079 * 120.87983 * 353.20721 * 12 10 8 27 27 H 1.08995 * 109.47498 * 299.99873 * 1 2 3 28 28 H 1.09005 * 109.47266 * 60.00068 * 1 2 3 29 29 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47498 * 240.00127 * 2 1 3 31 31 H 1.08997 * 109.46964 * 119.99994 * 2 1 3 32 32 H 1.09009 * 109.47122 * 60.00214 * 3 2 1 33 33 H 1.08997 * 109.47236 * 299.99827 * 3 2 1 34 34 H 1.09002 * 109.47823 * 215.98727 * 5 4 3 35 35 H 1.09000 * 109.46915 * 335.99019 * 5 4 3 36 36 H 1.08998 * 109.47110 * 300.00373 * 6 5 4 37 37 H 1.09000 * 109.46711 * 60.00394 * 6 5 4 38 38 H 1.09000 * 109.47092 * 60.00317 * 7 6 5 39 39 H 1.09005 * 109.47565 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47492 * 300.00120 * 7 6 5 41 41 H 1.09005 * 109.63069 * 248.51940 * 13 12 10 42 42 H 1.09007 * 109.62959 * 9.10535 * 13 12 10 43 43 H 1.09005 * 109.64644 * 294.08579 * 14 13 12 44 44 H 1.08994 * 109.42391 * 173.94920 * 14 13 12 45 45 H 1.08994 * 109.47253 * 54.30088 * 16 15 14 46 46 H 1.09003 * 109.47117 * 174.30035 * 16 15 14 47 47 H 0.97006 * 119.99855 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.49213 * 303.14729 * 25 15 14 49 49 H 1.09000 * 109.49261 * 183.06513 * 25 15 14 50 50 H 1.09004 * 109.62949 * 350.89580 * 26 12 10 51 51 H 1.09001 * 109.63271 * 111.47547 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2380 1.4423 -1.2677 6 6 4.6235 2.8770 -1.6342 7 6 5.3885 2.8769 -2.9592 8 6 4.1784 1.4483 1.1682 9 8 3.5753 1.3541 2.2169 10 6 5.6679 1.5707 1.1710 11 8 6.2659 1.7262 0.1267 12 7 6.3469 1.5081 2.3336 13 6 7.8171 1.4710 2.3480 14 6 8.3174 2.5601 3.3103 15 7 7.6791 2.3790 4.6209 16 6 8.2583 3.2884 5.6186 17 6 9.6992 2.9184 5.8591 18 1 10.1405 2.0902 5.3245 19 6 10.4538 3.6365 6.7623 20 7 9.9164 4.6447 7.4136 21 14 12.2398 3.1774 7.0609 22 1 12.6011 2.0154 6.2097 23 1 13.1111 4.3304 6.7194 24 1 12.4271 2.8217 8.4904 25 6 6.2230 2.5523 4.5330 26 6 5.6371 1.4690 3.6212 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 5.1398 0.8385 -1.1662 35 1 3.6070 1.0241 -2.0520 36 1 3.7217 3.4808 -1.7358 37 1 5.2544 3.2952 -0.8500 38 1 4.7572 2.4588 -3.7432 39 1 5.6635 3.8989 -3.2201 40 1 6.2903 2.2730 -2.8581 41 1 8.1554 0.4927 2.6898 42 1 8.1981 1.6635 1.3450 43 1 8.0631 3.5436 2.9147 44 1 9.3990 2.4795 3.4181 45 1 8.2027 4.3132 5.2517 46 1 7.7013 3.2060 6.5520 47 1 10.4474 5.1501 8.0488 48 1 5.9980 3.5358 4.1205 49 1 5.7857 2.4660 5.5277 50 1 4.5761 1.6603 3.4604 51 1 5.7698 0.4906 4.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:09 Heat of formation + Delta-G solvation = -45.253472 kcal Electronic energy + Delta-G solvation = -29122.320678 eV Core-core repulsion = 25250.652362 eV Total energy + Delta-G solvation = -3871.668315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13728 -38.95754 -37.77989 -36.82256 -34.55567 -34.19580 -32.43177 -32.34581 -30.73637 -28.53241 -27.44741 -26.58361 -25.45263 -24.00917 -22.88753 -22.15265 -21.97646 -21.36131 -20.05481 -18.93561 -17.25777 -17.20096 -16.38598 -16.21047 -15.98084 -15.41263 -14.87317 -14.82028 -14.70429 -14.58541 -14.46782 -14.13911 -13.72817 -13.56359 -13.52000 -13.39336 -12.88484 -12.59556 -12.46777 -12.31907 -12.21442 -12.04841 -11.94065 -11.69812 -11.43368 -11.33350 -11.24106 -11.03186 -10.88235 -10.78140 -10.73762 -10.69527 -10.53634 -10.38870 -9.87301 -9.31693 -9.09311 -8.85322 -8.52329 -8.43850 -7.29590 -6.05022 -4.06795 1.38808 2.23529 3.16814 3.29807 3.32017 3.37412 3.41868 4.12103 4.40675 4.58953 4.61059 4.73563 4.89346 4.91724 4.93765 5.08093 5.17597 5.23911 5.30604 5.34010 5.36827 5.42977 5.46880 5.56756 5.63791 5.66703 5.69359 5.71881 5.77820 5.80724 5.85323 5.91455 5.94682 6.01154 6.10873 6.20675 6.31514 6.39820 6.46727 6.52075 6.63857 6.87315 7.24434 7.30225 7.37501 7.66116 7.76485 8.00554 8.04012 8.14489 8.50002 9.00779 9.57739 11.05847 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002699 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.691012 B =10371.077065 C =11257.979070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.112 3.888 4 N -0.586 5.586 5 C 0.107 3.893 6 C -0.134 4.134 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.509 6.509 10 C 0.500 3.500 11 O -0.523 6.523 12 N -0.571 5.571 13 C 0.111 3.889 14 C 0.053 3.947 15 N -0.537 5.537 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.042 3.958 26 C 0.065 3.935 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.098 0.902 45 H -0.009 1.009 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.024 0.976 49 H 0.082 0.918 50 H 0.144 0.856 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.532 -7.274 -19.163 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.010 4.010 4 N -0.318 5.318 5 C -0.015 4.015 6 C -0.172 4.172 7 C -0.201 4.201 8 C 0.294 3.706 9 O -0.386 6.386 10 C 0.282 3.718 11 O -0.401 6.401 12 N -0.303 5.303 13 C -0.011 4.011 14 C -0.076 4.076 15 N -0.263 5.263 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.087 4.087 26 C -0.056 4.056 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.043 0.957 44 H 0.116 0.884 45 H 0.009 0.991 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.042 0.958 49 H 0.100 0.900 50 H 0.160 0.840 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.394 -7.584 -18.857 26.112 hybrid contribution 0.895 0.763 0.137 1.184 sum -15.498 -6.821 -18.720 25.242 Atomic orbital electron populations 1.21686 0.94917 1.02057 1.01992 1.21881 0.96320 0.96836 1.02798 1.21674 0.78211 0.97522 1.03572 1.47939 1.06836 1.70774 1.06254 1.22038 0.97282 0.98730 0.83427 1.21878 1.00089 0.96351 0.98922 1.21607 1.00472 1.01854 0.96158 1.20421 0.88925 0.77342 0.83923 1.90408 1.69716 1.48804 1.29700 1.19875 0.87987 0.79463 0.84471 1.90683 1.69979 1.48944 1.30525 1.48173 1.07873 1.68182 1.06066 1.22134 0.77434 1.00671 1.00854 1.22394 1.01079 0.95038 0.89119 1.62119 1.01381 1.55975 1.06798 1.19729 0.95134 0.88871 0.89450 1.21184 0.95222 1.15010 1.23262 0.91759 1.24999 0.98742 0.95029 0.95869 1.69968 1.36604 1.20068 1.27090 0.86441 0.84600 0.78320 0.78054 1.19628 1.21128 1.21000 1.22414 0.90878 0.96049 0.99364 1.23251 1.00583 1.00216 0.81576 0.92321 0.92666 0.92385 0.91832 0.91217 0.89562 0.90118 0.87949 0.91007 0.92895 0.90487 0.93244 0.92761 0.92055 0.90378 0.89150 0.95694 0.88401 0.99150 0.95011 0.92944 0.95785 0.89999 0.83954 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.06 6.26 -26.73 -0.17 -1.22 16 3 C 0.11 0.93 5.34 -4.04 -0.02 0.91 16 4 N -0.59 -6.15 2.49 -174.19 -0.43 -6.59 16 5 C 0.11 1.00 4.98 -4.04 -0.02 0.98 16 6 C -0.13 -1.30 5.63 -26.73 -0.15 -1.46 16 7 C -0.14 -1.21 9.91 37.15 0.37 -0.85 16 8 C 0.51 6.82 7.61 -11.58 -0.09 6.73 16 9 O -0.51 -7.49 12.66 5.50 0.07 -7.42 16 10 C 0.50 7.39 7.46 -11.58 -0.09 7.30 16 11 O -0.52 -7.85 10.76 5.50 0.06 -7.79 16 12 N -0.57 -9.02 3.00 -172.69 -0.52 -9.54 16 13 C 0.11 1.79 6.64 -3.37 -0.02 1.77 16 14 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 15 N -0.54 -11.54 4.62 -235.46 -1.09 -12.63 16 16 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 17 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 18 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 26 C 0.07 1.03 6.26 -3.60 -0.02 1.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.80 7.49 -51.92 -0.39 0.41 16 33 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.10 1.11 5.93 -51.93 -0.31 0.81 16 35 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.97 6.27 -51.93 -0.33 0.65 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.37 7.04 -51.92 -0.37 1.01 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 45 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 46 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 50 H 0.14 2.22 4.09 -55.98 -0.23 1.99 16 51 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -30.45 396.33 -9.57 -40.02 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -9.06 Total: -1.09 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.29 Total: 8.47 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -1.30 Total: -54.64 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.13 Total: -15.21 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.45 -9.57 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.235 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds