Wall clock time and date at job start Fri Apr 10 2020 18:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46498 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.46495 * 120.00255 * 90.00116 * 4 3 2 6 6 C 1.53004 * 109.47303 * 95.98499 * 5 4 3 7 7 C 1.52994 * 109.47458 * 180.02562 * 6 5 4 8 8 C 1.34785 * 119.99996 * 269.72476 * 4 3 2 9 9 O 1.21345 * 120.00019 * 5.42762 * 8 4 3 10 10 C 1.49452 * 119.99782 * 185.42356 * 8 4 3 11 11 O 1.21341 * 120.00296 * 3.37008 * 10 8 4 12 12 N 1.34780 * 119.99787 * 183.37560 * 10 8 4 13 13 C 1.47071 * 120.88128 * 172.92804 * 12 10 8 14 14 C 1.53703 * 108.27797 * 128.75272 * 13 12 10 15 15 N 1.46897 * 109.25246 * 54.08305 * 14 13 12 16 16 C 1.46901 * 110.99773 * 172.61031 * 15 14 13 17 17 C 1.50700 * 109.47063 * 294.30102 * 16 15 14 18 18 H 1.08002 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99734 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00190 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99689 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47070 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47184 * 120.00071 * 21 19 17 24 24 H 1.48498 * 109.47414 * 240.00082 * 21 19 17 25 25 C 1.46906 * 111.26908 * 296.75660 * 15 14 13 26 26 C 1.47079 * 120.87983 * 353.20721 * 12 10 8 27 27 H 1.08995 * 109.47498 * 299.99873 * 1 2 3 28 28 H 1.09005 * 109.47266 * 60.00068 * 1 2 3 29 29 H 1.09004 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47498 * 240.00127 * 2 1 3 31 31 H 1.08997 * 109.46964 * 119.99994 * 2 1 3 32 32 H 1.09009 * 109.47122 * 60.00214 * 3 2 1 33 33 H 1.08997 * 109.47236 * 299.99827 * 3 2 1 34 34 H 1.09002 * 109.47823 * 215.98727 * 5 4 3 35 35 H 1.09000 * 109.46915 * 335.99019 * 5 4 3 36 36 H 1.08998 * 109.47110 * 300.00373 * 6 5 4 37 37 H 1.09000 * 109.46711 * 60.00394 * 6 5 4 38 38 H 1.09000 * 109.47092 * 60.00317 * 7 6 5 39 39 H 1.09005 * 109.47565 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47492 * 300.00120 * 7 6 5 41 41 H 1.09005 * 109.63069 * 248.51940 * 13 12 10 42 42 H 1.09007 * 109.62959 * 9.10535 * 13 12 10 43 43 H 1.09005 * 109.64644 * 294.08579 * 14 13 12 44 44 H 1.08994 * 109.42391 * 173.94920 * 14 13 12 45 45 H 1.08994 * 109.47253 * 54.30088 * 16 15 14 46 46 H 1.09003 * 109.47117 * 174.30035 * 16 15 14 47 47 H 0.97006 * 119.99855 * 180.02562 * 20 19 17 48 48 H 1.08997 * 109.49213 * 303.14729 * 25 15 14 49 49 H 1.09000 * 109.49261 * 183.06513 * 25 15 14 50 50 H 1.09004 * 109.62949 * 350.89580 * 26 12 10 51 51 H 1.09001 * 109.63271 * 111.47547 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2380 1.4423 -1.2677 6 6 4.6235 2.8770 -1.6342 7 6 5.3885 2.8769 -2.9592 8 6 4.1784 1.4483 1.1682 9 8 3.5753 1.3541 2.2169 10 6 5.6679 1.5707 1.1710 11 8 6.2659 1.7262 0.1267 12 7 6.3469 1.5081 2.3336 13 6 7.8171 1.4710 2.3480 14 6 8.3174 2.5601 3.3103 15 7 7.6791 2.3790 4.6209 16 6 8.2583 3.2884 5.6186 17 6 9.6992 2.9184 5.8591 18 1 10.1405 2.0902 5.3245 19 6 10.4538 3.6365 6.7623 20 7 9.9164 4.6447 7.4136 21 14 12.2398 3.1774 7.0609 22 1 12.6011 2.0154 6.2097 23 1 13.1111 4.3304 6.7194 24 1 12.4271 2.8217 8.4904 25 6 6.2230 2.5523 4.5330 26 6 5.6371 1.4690 3.6212 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 5.1398 0.8385 -1.1662 35 1 3.6070 1.0241 -2.0520 36 1 3.7217 3.4808 -1.7358 37 1 5.2544 3.2952 -0.8500 38 1 4.7572 2.4588 -3.7432 39 1 5.6635 3.8989 -3.2201 40 1 6.2903 2.2730 -2.8581 41 1 8.1554 0.4927 2.6898 42 1 8.1981 1.6635 1.3450 43 1 8.0631 3.5436 2.9147 44 1 9.3990 2.4795 3.4181 45 1 8.2027 4.3132 5.2517 46 1 7.7013 3.2060 6.5520 47 1 10.4474 5.1501 8.0488 48 1 5.9980 3.5358 4.1205 49 1 5.7857 2.4660 5.5277 50 1 4.5761 1.6603 3.4604 51 1 5.7698 0.4906 4.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:08 Heat of formation + Delta-G solvation = -64.111343 kcal Electronic energy + Delta-G solvation = -29123.138416 eV Core-core repulsion = 25250.652362 eV Total energy + Delta-G solvation = -3872.486054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23648 -40.17102 -39.07542 -37.90023 -35.90932 -35.08658 -34.37649 -33.14469 -32.18200 -30.23992 -28.30910 -27.67744 -26.91700 -25.30494 -24.21261 -23.57438 -22.82971 -22.49932 -21.29127 -20.11425 -18.61237 -18.34023 -18.13673 -17.42500 -17.06840 -16.64338 -16.26200 -16.08455 -15.83117 -15.67478 -15.57319 -15.47290 -15.30556 -15.00765 -14.41114 -14.24050 -14.17555 -14.10456 -13.62577 -13.20625 -13.19785 -13.02000 -12.90690 -12.81163 -12.76599 -12.62499 -12.54755 -12.36654 -12.32921 -12.23611 -12.08392 -11.84470 -11.64549 -11.56955 -11.48872 -11.30310 -10.64613 -10.11004 -9.97680 -9.74689 -9.10060 -8.21974 -6.32391 0.27799 1.20849 1.41427 1.42040 1.55673 2.04854 2.25491 2.40055 3.01785 3.10302 3.22781 3.90149 3.95641 3.99798 4.01178 4.05410 4.18875 4.20073 4.29106 4.35516 4.39154 4.45281 4.50666 4.52976 4.59151 4.72625 4.78153 4.80021 4.85414 4.89373 4.90307 4.97310 4.99088 5.09638 5.16233 5.17826 5.20717 5.22355 5.24898 5.35345 5.40997 5.46025 5.58089 5.62362 5.90765 6.00467 6.13409 6.26068 6.53666 6.58198 6.83172 6.87772 7.37543 8.89633 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002699 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.691012 B =10371.077065 C =11257.979070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.109 3.891 4 N -0.575 5.575 5 C 0.107 3.893 6 C -0.131 4.131 7 C -0.139 4.139 8 C 0.507 3.493 9 O -0.528 6.528 10 C 0.498 3.502 11 O -0.524 6.524 12 N -0.581 5.581 13 C 0.124 3.876 14 C 0.056 3.944 15 N -0.540 5.540 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.042 3.958 26 C 0.080 3.920 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.011 0.989 44 H 0.085 0.915 45 H -0.042 1.042 46 H 0.007 0.993 47 H 0.264 0.736 48 H 0.014 0.986 49 H 0.083 0.917 50 H 0.153 0.847 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 -8.645 -21.423 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.012 4.012 4 N -0.305 5.305 5 C -0.015 4.015 6 C -0.169 4.169 7 C -0.197 4.197 8 C 0.290 3.710 9 O -0.407 6.407 10 C 0.282 3.718 11 O -0.402 6.402 12 N -0.314 5.314 13 C 0.002 3.998 14 C -0.073 4.073 15 N -0.265 5.265 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.796 3.204 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.087 4.087 26 C -0.041 4.041 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.029 0.971 44 H 0.104 0.896 45 H -0.024 1.024 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.102 0.898 50 H 0.169 0.831 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.127 -8.969 -21.177 28.675 hybrid contribution 1.028 1.228 0.738 1.763 sum -16.099 -7.741 -20.439 27.145 Atomic orbital electron populations 1.21666 0.93621 1.02518 1.02528 1.21823 0.97368 0.95948 1.02136 1.21907 0.76495 0.98348 1.04476 1.48057 1.07880 1.68883 1.05721 1.22125 0.97411 0.98391 0.83543 1.21821 1.00105 0.96514 0.98481 1.21577 1.00227 1.01820 0.96094 1.20163 0.88146 0.77970 0.84715 1.90377 1.69575 1.50255 1.30463 1.20200 0.88866 0.78803 0.83975 1.90691 1.70409 1.48568 1.30485 1.48196 1.07661 1.69121 1.06424 1.21953 0.77962 0.99600 1.00297 1.22367 1.00397 0.95792 0.88730 1.62063 1.03066 1.54286 1.07087 1.19385 0.94845 0.88014 0.89561 1.21480 0.96046 1.15104 1.23372 0.91435 1.25946 1.03582 0.94788 0.95467 1.70099 1.38553 1.21206 1.27762 0.85299 0.78634 0.78369 0.78103 1.18421 1.20561 1.20462 1.22497 0.89077 0.96763 1.00327 1.23132 1.00692 0.99166 0.81098 0.92856 0.91067 0.92005 0.90788 0.93569 0.90689 0.87181 0.89478 0.87585 0.91653 0.93816 0.90959 0.92825 0.93257 0.89427 0.87976 0.97090 0.89633 1.02420 0.97464 0.92682 0.96778 0.89836 0.83082 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.13 -1.73 6.26 30.59 0.19 -1.54 16 3 C 0.11 1.54 5.34 86.38 0.46 2.00 16 4 N -0.57 -10.98 2.49 -823.39 -2.05 -13.03 16 5 C 0.11 1.72 4.98 86.38 0.43 2.15 16 6 C -0.13 -2.30 5.63 30.59 0.17 -2.13 16 7 C -0.14 -2.08 9.91 71.98 0.71 -1.36 16 8 C 0.51 13.11 7.61 87.27 0.66 13.77 16 9 O -0.53 -15.22 12.66 -3.23 -0.04 -15.26 16 10 C 0.50 14.44 7.46 87.27 0.65 15.09 16 11 O -0.52 -15.34 10.76 -3.22 -0.03 -15.37 16 12 N -0.58 -18.17 3.00 -818.62 -2.46 -20.63 16 13 C 0.12 3.94 6.64 86.51 0.57 4.52 16 14 C 0.06 2.23 5.47 86.54 0.47 2.70 16 15 N -0.54 -23.90 4.62 -898.86 -4.15 -28.06 16 16 C 0.21 11.30 4.72 85.56 0.40 11.70 16 17 C -0.52 -29.56 8.41 25.60 0.22 -29.35 16 18 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 19 C 0.00 0.01 5.46 84.66 0.46 0.47 16 20 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 21 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.04 1.61 5.62 86.38 0.49 2.09 16 26 C 0.08 2.55 6.26 86.35 0.54 3.09 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.28 7.49 -2.38 -0.02 1.26 16 33 H 0.11 0.95 8.07 -2.39 -0.02 0.94 16 34 H 0.09 1.74 5.93 -2.39 -0.01 1.72 16 35 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.04 1.07 6.27 -2.39 -0.01 1.06 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 2.64 8.14 -2.38 -0.02 2.63 16 42 H 0.10 3.02 7.04 -2.38 -0.02 3.01 16 43 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.09 3.58 6.67 -2.39 -0.02 3.56 16 45 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 46 H 0.01 0.42 7.97 -2.39 -0.02 0.40 16 47 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 48 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.08 3.10 7.99 -2.39 -0.02 3.08 16 50 H 0.15 4.68 4.09 -66.51 -0.27 4.40 16 51 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -67.14 396.33 1.36 -65.78 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.63 Total: 14.25 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 7.15 Total: 22.52 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -8.37 Total: -118.22 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.08 Total: -30.64 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.14 1.36 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.673 kcal (2) G-P(sol) polarization free energy of solvation -67.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds