Wall clock time and date at job start Fri Apr 10 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47374 * 2 1 4 4 C 1.50703 * 109.46609 * 240.00268 * 2 1 3 5 5 O 1.21277 * 120.00547 * 13.97901 * 4 2 1 6 6 N 1.34783 * 119.99818 * 193.97750 * 4 2 1 7 7 C 1.47079 * 120.87971 * 183.33588 * 6 4 2 8 8 C 1.53696 * 108.27638 * 128.75529 * 7 6 4 9 9 N 1.46899 * 109.25703 * 54.07767 * 8 7 6 10 10 C 1.46905 * 110.99794 * 172.60989 * 9 8 7 11 11 C 1.50701 * 109.46764 * 294.30181 * 10 9 8 12 12 H 1.07998 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99642 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00559 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99849 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47259 * 60.00238 * 15 13 11 17 17 H 1.48503 * 109.47251 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47124 * 299.99908 * 15 13 11 19 19 C 1.46898 * 111.27138 * 296.75317 * 9 8 7 20 20 C 1.47084 * 120.87897 * 3.60817 * 6 4 2 21 21 N 1.46895 * 109.47366 * 120.00644 * 2 1 3 22 22 C 1.47016 * 111.00622 * 63.63026 * 21 2 1 23 23 C 1.53093 * 109.26090 * 177.60951 * 22 21 2 24 24 O 1.43015 * 109.25904 * 56.85292 * 23 22 21 25 25 C 1.43016 * 113.73376 * 301.32711 * 24 23 22 26 26 C 1.47021 * 110.99797 * 299.99444 * 21 2 1 27 27 H 1.08995 * 109.47292 * 59.99135 * 1 2 3 28 28 H 1.08999 * 109.46689 * 299.99532 * 1 2 3 29 29 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46621 * 60.00059 * 3 2 1 31 31 H 1.08997 * 109.47055 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46875 * 300.00648 * 3 2 1 33 33 H 1.08998 * 109.62095 * 248.51573 * 7 6 4 34 34 H 1.08991 * 109.63232 * 9.10044 * 7 6 4 35 35 H 1.09000 * 109.64580 * 294.07272 * 8 7 6 36 36 H 1.09001 * 109.42304 * 173.94575 * 8 7 6 37 37 H 1.08999 * 109.47038 * 54.29756 * 10 9 8 38 38 H 1.08994 * 109.47211 * 174.30212 * 10 9 8 39 39 H 0.96996 * 120.00357 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.49652 * 303.14885 * 19 9 8 41 41 H 1.08994 * 109.49159 * 183.06347 * 19 9 8 42 42 H 1.08999 * 109.63136 * 350.89660 * 20 6 4 43 43 H 1.08997 * 109.62378 * 111.48198 * 20 6 4 44 44 H 1.09008 * 109.50139 * 297.54889 * 22 21 2 45 45 H 1.09008 * 109.50389 * 57.66951 * 22 21 2 46 46 H 1.09000 * 109.50557 * 296.91341 * 23 22 21 47 47 H 1.09000 * 109.54056 * 176.80408 * 23 22 21 48 48 H 1.08996 * 109.50911 * 298.73510 * 25 24 23 49 49 H 1.09005 * 109.54337 * 178.63033 * 25 24 23 50 50 H 1.08998 * 109.50769 * 302.32995 * 26 21 2 51 51 H 1.09000 * 109.50352 * 62.46298 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 1.2734 -0.9464 -2.1468 6 7 3.3248 -1.0835 -1.3129 7 6 3.8526 -1.7123 -2.5333 8 6 5.1203 -0.9534 -2.9569 9 7 6.0578 -0.9076 -1.8269 10 6 7.3514 -0.3461 -2.2386 11 6 8.0115 -1.2754 -3.2243 12 1 7.5195 -2.1917 -3.5155 13 6 9.2435 -0.9559 -3.7545 14 7 9.8429 0.1596 -3.3996 15 14 10.0614 -2.1075 -4.9769 16 1 9.1887 -2.2662 -6.1678 17 1 11.3691 -1.5400 -5.3930 18 1 10.2771 -3.4321 -4.3411 19 6 5.4941 -0.1573 -0.6968 20 6 4.2433 -0.8780 -0.1827 21 7 2.0197 -0.6926 1.1993 22 6 1.6207 -2.1075 1.1906 23 6 2.2007 -2.8034 2.4247 24 8 1.7571 -2.1231 3.6019 25 6 2.1291 -0.7428 3.6438 26 6 1.5484 -0.0260 2.4220 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 4.0969 -2.7552 -2.3314 34 1 3.1075 -1.6547 -3.3266 35 1 4.8577 0.0622 -3.2530 36 1 5.5874 -1.4682 -3.7964 37 1 7.1934 0.6261 -2.7055 38 1 7.9917 -0.2295 -1.3643 39 1 10.7097 0.3842 -3.7723 40 1 5.2263 0.8472 -1.0244 41 1 6.2323 -0.0949 0.1027 42 1 3.7565 -0.2685 0.5787 43 1 4.5243 -1.8423 0.2406 44 1 0.5331 -2.1790 1.2098 45 1 2.0018 -2.5876 0.2892 46 1 3.2894 -2.7787 2.3785 47 1 1.8609 -3.8387 2.4529 48 1 3.2157 -0.6582 3.6330 49 1 1.7376 -0.2871 4.5533 50 1 1.8768 1.0134 2.4196 51 1 0.4598 -0.0643 2.4609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:38 Heat of formation + Delta-G solvation = -43.374663 kcal Electronic energy + Delta-G solvation = -30511.791629 eV Core-core repulsion = 26640.204785 eV Total energy + Delta-G solvation = -3871.586844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19300 -39.23675 -37.64886 -36.60736 -34.34022 -32.37713 -32.29456 -31.51127 -30.62334 -28.32050 -27.59793 -26.86975 -25.60953 -24.52521 -23.40259 -22.58674 -21.81761 -20.72336 -19.80474 -18.43476 -17.66137 -16.51540 -16.37920 -16.09208 -15.74971 -15.46445 -15.28928 -14.87737 -14.82458 -14.64405 -14.63172 -14.21065 -13.87614 -13.65354 -13.51031 -13.20541 -12.74443 -12.55101 -12.38049 -12.24065 -12.14361 -12.11393 -11.80234 -11.70298 -11.59077 -11.29826 -11.22757 -11.05561 -10.82271 -10.75636 -10.69906 -10.58860 -10.51457 -9.99253 -9.86197 -9.57915 -9.28049 -8.53006 -8.45926 -8.36237 -7.28574 -6.05399 -4.07160 2.59756 3.15828 3.32151 3.36305 3.36497 3.39188 3.61735 4.28163 4.40417 4.56395 4.62194 4.72948 4.74823 4.83482 4.90265 4.94083 5.02068 5.20215 5.30212 5.32645 5.33978 5.37894 5.42168 5.47819 5.52263 5.53958 5.55858 5.59870 5.67790 5.72045 5.78178 5.88457 5.89039 5.97571 6.01287 6.26617 6.32152 6.47179 6.51777 6.53859 6.56700 6.80251 6.86847 7.24804 7.29955 7.62618 7.76496 8.03856 8.14531 8.28159 8.50340 8.99958 9.57375 11.05373 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003244 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.303453 B = 8628.141175 C = 9084.045287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 C -0.144 4.144 4 C 0.525 3.475 5 O -0.552 6.552 6 N -0.592 5.592 7 C 0.112 3.888 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.037 3.963 20 C 0.101 3.899 21 N -0.515 5.515 22 C 0.010 3.990 23 C 0.066 3.934 24 O -0.386 6.386 25 C 0.064 3.936 26 C 0.008 3.992 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.095 0.905 37 H -0.010 1.010 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.022 0.978 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 0.425 13.522 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.002 4.002 3 C -0.202 4.202 4 C 0.312 3.688 5 O -0.430 6.430 6 N -0.324 5.324 7 C -0.010 4.010 8 C -0.075 4.075 9 N -0.260 5.260 10 C 0.069 3.931 11 C -0.548 4.548 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.092 4.092 20 C -0.022 4.022 21 N -0.241 5.241 22 C -0.118 4.118 23 C -0.011 4.011 24 O -0.304 6.304 25 C -0.013 4.013 26 C -0.120 4.120 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.113 0.887 37 H 0.008 0.992 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.111 0.889 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.569 -0.149 13.290 22.030 hybrid contribution -0.115 0.428 -1.268 1.344 sum -17.683 0.279 12.022 21.385 Atomic orbital electron populations 1.22208 0.94158 1.03000 1.02835 1.21301 0.94685 0.95528 0.88692 1.21986 1.02875 0.92420 1.02876 1.20173 0.82037 0.78671 0.87954 1.90677 1.55651 1.56331 1.40346 1.48188 1.08850 1.58860 1.16493 1.21964 0.95535 0.96953 0.86588 1.22384 0.91561 0.98281 0.95312 1.62095 1.04551 1.53181 1.06195 1.19708 0.83905 0.93522 0.95938 1.21112 1.03057 1.06322 1.24302 0.91901 1.24981 0.97189 0.95377 0.96956 1.69942 1.16106 1.23537 1.44215 0.86567 0.78506 0.80981 0.81390 1.20263 1.21370 1.20141 1.22492 0.96042 0.94768 0.95915 1.22539 0.89225 1.01931 0.88499 1.62805 1.57479 1.02456 1.01352 1.22908 0.99585 0.88875 1.00450 1.22658 0.99395 0.95818 0.83201 1.87986 1.78682 1.22560 1.41199 1.22670 0.99930 0.81645 0.97073 1.22973 0.99161 0.99736 0.90143 0.90814 0.91804 0.91966 0.91184 0.90577 0.91339 0.91057 0.89755 0.95918 0.88728 0.99249 0.95120 0.92847 0.95955 0.90431 0.85775 0.91589 0.93167 0.89339 0.91730 0.88414 0.91893 0.88479 0.88900 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 7.17 37.16 0.27 -1.40 16 2 C 0.09 0.98 0.29 -132.75 -0.04 0.94 16 3 C -0.14 -1.39 7.97 37.16 0.30 -1.09 16 4 C 0.53 7.65 5.06 -10.98 -0.06 7.60 16 5 O -0.55 -9.79 15.46 5.56 0.09 -9.71 16 6 N -0.59 -8.80 2.70 -172.18 -0.46 -9.26 16 7 C 0.11 1.84 6.62 -3.36 -0.02 1.82 16 8 C 0.05 1.04 5.47 -3.46 -0.02 1.02 16 9 N -0.54 -11.07 4.62 -235.47 -1.09 -12.16 16 10 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 11 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 12 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 20 C 0.10 1.38 4.79 -3.60 -0.02 1.36 16 21 N -0.51 -4.84 1.56 -219.99 -0.34 -5.18 16 22 C 0.01 0.10 4.62 -3.71 -0.02 0.08 16 23 C 0.07 0.60 7.01 37.21 0.26 0.86 16 24 O -0.39 -3.80 10.83 -35.23 -0.38 -4.18 16 25 C 0.06 0.48 7.01 37.21 0.26 0.74 16 26 C 0.01 0.06 4.87 -3.71 -0.02 0.04 16 27 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 28 H 0.06 0.52 6.46 -51.93 -0.34 0.19 16 29 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 30 H 0.07 0.51 6.35 -51.93 -0.33 0.18 16 31 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 1.96 6.67 -51.93 -0.35 1.61 16 37 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 38 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 42 H 0.12 1.46 3.61 -51.93 -0.19 1.27 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.51 6.52 -51.92 -0.34 0.17 16 45 H 0.09 1.02 6.56 -51.92 -0.34 0.68 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.58 6.19 -51.93 -0.32 0.26 16 51 H 0.05 0.39 6.44 -51.93 -0.33 0.05 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -31.37 374.00 -8.93 -40.30 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.55 Total: -0.87 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.47 Total: 4.68 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -1.16 Total: -52.23 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.30 Total: -13.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.37 -8.93 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.073 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds