Wall clock time and date at job start Fri Apr 10 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47374 * 2 1 4 4 C 1.50703 * 109.46609 * 240.00268 * 2 1 3 5 5 O 1.21277 * 120.00547 * 13.97901 * 4 2 1 6 6 N 1.34783 * 119.99818 * 193.97750 * 4 2 1 7 7 C 1.47079 * 120.87971 * 183.33588 * 6 4 2 8 8 C 1.53696 * 108.27638 * 128.75529 * 7 6 4 9 9 N 1.46899 * 109.25703 * 54.07767 * 8 7 6 10 10 C 1.46905 * 110.99794 * 172.60989 * 9 8 7 11 11 C 1.50701 * 109.46764 * 294.30181 * 10 9 8 12 12 H 1.07998 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99642 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00559 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99849 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47259 * 60.00238 * 15 13 11 17 17 H 1.48503 * 109.47251 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47124 * 299.99908 * 15 13 11 19 19 C 1.46898 * 111.27138 * 296.75317 * 9 8 7 20 20 C 1.47084 * 120.87897 * 3.60817 * 6 4 2 21 21 N 1.46895 * 109.47366 * 120.00644 * 2 1 3 22 22 C 1.47016 * 111.00622 * 63.63026 * 21 2 1 23 23 C 1.53093 * 109.26090 * 177.60951 * 22 21 2 24 24 O 1.43015 * 109.25904 * 56.85292 * 23 22 21 25 25 C 1.43016 * 113.73376 * 301.32711 * 24 23 22 26 26 C 1.47021 * 110.99797 * 299.99444 * 21 2 1 27 27 H 1.08995 * 109.47292 * 59.99135 * 1 2 3 28 28 H 1.08999 * 109.46689 * 299.99532 * 1 2 3 29 29 H 1.08997 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46621 * 60.00059 * 3 2 1 31 31 H 1.08997 * 109.47055 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46875 * 300.00648 * 3 2 1 33 33 H 1.08998 * 109.62095 * 248.51573 * 7 6 4 34 34 H 1.08991 * 109.63232 * 9.10044 * 7 6 4 35 35 H 1.09000 * 109.64580 * 294.07272 * 8 7 6 36 36 H 1.09001 * 109.42304 * 173.94575 * 8 7 6 37 37 H 1.08999 * 109.47038 * 54.29756 * 10 9 8 38 38 H 1.08994 * 109.47211 * 174.30212 * 10 9 8 39 39 H 0.96996 * 120.00357 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.49652 * 303.14885 * 19 9 8 41 41 H 1.08994 * 109.49159 * 183.06347 * 19 9 8 42 42 H 1.08999 * 109.63136 * 350.89660 * 20 6 4 43 43 H 1.08997 * 109.62378 * 111.48198 * 20 6 4 44 44 H 1.09008 * 109.50139 * 297.54889 * 22 21 2 45 45 H 1.09008 * 109.50389 * 57.66951 * 22 21 2 46 46 H 1.09000 * 109.50557 * 296.91341 * 23 22 21 47 47 H 1.09000 * 109.54056 * 176.80408 * 23 22 21 48 48 H 1.08996 * 109.50911 * 298.73510 * 25 24 23 49 49 H 1.09005 * 109.54337 * 178.63033 * 25 24 23 50 50 H 1.08998 * 109.50769 * 302.32995 * 26 21 2 51 51 H 1.09000 * 109.50352 * 62.46298 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 1.2734 -0.9464 -2.1468 6 7 3.3248 -1.0835 -1.3129 7 6 3.8526 -1.7123 -2.5333 8 6 5.1203 -0.9534 -2.9569 9 7 6.0578 -0.9076 -1.8269 10 6 7.3514 -0.3461 -2.2386 11 6 8.0115 -1.2754 -3.2243 12 1 7.5195 -2.1917 -3.5155 13 6 9.2435 -0.9559 -3.7545 14 7 9.8429 0.1596 -3.3996 15 14 10.0614 -2.1075 -4.9769 16 1 9.1887 -2.2662 -6.1678 17 1 11.3691 -1.5400 -5.3930 18 1 10.2771 -3.4321 -4.3411 19 6 5.4941 -0.1573 -0.6968 20 6 4.2433 -0.8780 -0.1827 21 7 2.0197 -0.6926 1.1993 22 6 1.6207 -2.1075 1.1906 23 6 2.2007 -2.8034 2.4247 24 8 1.7571 -2.1231 3.6019 25 6 2.1291 -0.7428 3.6438 26 6 1.5484 -0.0260 2.4220 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 4.0969 -2.7552 -2.3314 34 1 3.1075 -1.6547 -3.3266 35 1 4.8577 0.0622 -3.2530 36 1 5.5874 -1.4682 -3.7964 37 1 7.1934 0.6261 -2.7055 38 1 7.9917 -0.2295 -1.3643 39 1 10.7097 0.3842 -3.7723 40 1 5.2263 0.8472 -1.0244 41 1 6.2323 -0.0949 0.1027 42 1 3.7565 -0.2685 0.5787 43 1 4.5243 -1.8423 0.2406 44 1 0.5331 -2.1790 1.2098 45 1 2.0018 -2.5876 0.2892 46 1 3.2894 -2.7787 2.3785 47 1 1.8609 -3.8387 2.4529 48 1 3.2157 -0.6582 3.6330 49 1 1.7376 -0.2871 4.5533 50 1 1.8768 1.0134 2.4196 51 1 0.4598 -0.0643 2.4609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:36 Heat of formation + Delta-G solvation = -64.870792 kcal Electronic energy + Delta-G solvation = -30512.723771 eV Core-core repulsion = 26640.204785 eV Total energy + Delta-G solvation = -3872.518986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.18219 -40.19964 -39.05247 -37.51720 -35.94857 -34.35359 -33.10345 -32.27651 -31.90015 -30.05464 -28.40876 -27.67388 -27.25201 -25.51465 -24.53165 -24.01469 -23.26776 -21.87881 -20.84867 -19.57016 -18.66675 -18.47886 -17.31004 -17.20676 -16.68672 -16.65397 -16.38895 -16.01612 -15.93874 -15.77779 -15.69875 -15.49422 -15.27254 -15.08891 -14.82703 -14.31370 -13.98953 -13.77616 -13.51098 -13.34425 -13.16903 -13.06668 -12.99955 -12.84642 -12.74390 -12.56093 -12.46844 -12.35967 -12.30347 -12.21607 -12.16282 -12.00748 -11.70990 -11.41058 -11.31926 -10.83409 -10.61648 -10.54597 -9.73034 -9.32556 -9.02651 -8.20388 -6.30281 1.41943 1.44403 1.46685 1.52213 1.97210 2.40459 2.56708 3.00039 3.12005 3.26121 3.30820 3.79746 3.84088 3.93537 4.01884 4.05540 4.10520 4.14444 4.25936 4.29856 4.33906 4.42735 4.46801 4.53589 4.58309 4.60856 4.65275 4.69817 4.75991 4.82049 4.86538 4.89553 4.90528 4.93343 4.98057 5.04528 5.11426 5.15870 5.19285 5.22981 5.30756 5.51406 5.64109 5.71314 5.83193 6.04128 6.23427 6.24008 6.45932 6.61756 6.85049 7.08766 7.39471 8.90435 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003244 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.303453 B = 8628.141175 C = 9084.045287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.142 4.142 4 C 0.523 3.477 5 O -0.586 6.586 6 N -0.595 5.595 7 C 0.123 3.877 8 C 0.060 3.940 9 N -0.538 5.538 10 C 0.210 3.790 11 C -0.524 4.524 12 H 0.064 0.936 13 C 0.004 3.996 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.035 3.965 20 C 0.117 3.883 21 N -0.517 5.517 22 C 0.015 3.985 23 C 0.070 3.930 24 O -0.401 6.401 25 C 0.060 3.940 26 C 0.009 3.991 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.009 0.991 36 H 0.076 0.924 37 H -0.042 1.042 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.018 0.982 41 H 0.083 0.917 42 H 0.151 0.849 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.064 0.936 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.841 0.179 15.096 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.005 3.995 3 C -0.200 4.200 4 C 0.311 3.689 5 O -0.466 6.466 6 N -0.326 5.326 7 C 0.000 4.000 8 C -0.069 4.069 9 N -0.263 5.263 10 C 0.084 3.916 11 C -0.563 4.563 12 H 0.082 0.918 13 C -0.194 4.194 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.093 4.093 20 C -0.005 4.005 21 N -0.243 5.243 22 C -0.113 4.113 23 C -0.007 4.007 24 O -0.320 6.320 25 C -0.016 4.016 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.095 0.905 37 H -0.025 1.025 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.101 0.899 42 H 0.168 0.832 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.082 0.918 49 H 0.136 0.864 50 H 0.131 0.869 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.578 -0.395 14.894 23.815 hybrid contribution 0.148 0.541 -1.716 1.806 sum -18.430 0.147 13.178 22.657 Atomic orbital electron populations 1.22171 0.93447 1.02500 1.03518 1.21232 0.95066 0.95717 0.87505 1.22005 1.02285 0.91542 1.04138 1.20890 0.81329 0.77843 0.88828 1.90658 1.56383 1.57549 1.42016 1.48247 1.09420 1.58830 1.16115 1.21719 0.93890 0.96840 0.87555 1.22292 0.92353 0.97686 0.94543 1.62025 1.03488 1.53399 1.07372 1.19357 0.85958 0.91920 0.94414 1.21434 1.03484 1.06576 1.24776 0.91818 1.25870 0.97840 0.96915 0.98791 1.70067 1.16551 1.25298 1.45501 0.85478 0.77431 0.78955 0.79010 1.19439 1.20937 1.19219 1.22636 0.97511 0.94639 0.94558 1.22550 0.87545 1.02164 0.88229 1.62735 1.57578 1.02335 1.01662 1.22824 0.99343 0.89111 1.00063 1.22644 0.99195 0.96226 0.82627 1.87974 1.78905 1.23822 1.41288 1.22859 1.00212 0.80650 0.97919 1.23085 0.99457 1.00500 0.88786 0.92042 0.89146 0.93089 0.87993 0.91427 0.92118 0.90428 0.89919 0.97272 0.90524 1.02456 0.97212 0.92693 0.96378 0.89879 0.83196 0.91206 0.93442 0.91251 0.91879 0.87554 0.91760 0.86415 0.86914 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 7.17 71.98 0.52 -2.39 16 2 C 0.10 1.92 0.29 2.78 0.00 1.92 16 3 C -0.14 -2.39 7.97 71.98 0.57 -1.81 16 4 C 0.52 14.86 5.06 87.66 0.44 15.31 16 5 O -0.59 -20.78 15.46 -3.02 -0.05 -20.83 16 6 N -0.60 -17.35 2.70 -817.04 -2.20 -19.55 16 7 C 0.12 4.06 6.62 86.50 0.57 4.64 16 8 C 0.06 2.39 5.47 86.54 0.47 2.87 16 9 N -0.54 -22.68 4.62 -898.88 -4.15 -26.83 16 10 C 0.21 11.03 4.72 85.56 0.40 11.43 16 11 C -0.52 -29.36 8.41 25.60 0.22 -29.15 16 12 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 15 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.04 1.19 5.62 86.38 0.49 1.67 16 20 C 0.12 3.05 4.79 86.35 0.41 3.47 16 21 N -0.52 -8.43 1.56 -849.91 -1.32 -9.76 16 22 C 0.01 0.27 4.62 86.31 0.40 0.67 16 23 C 0.07 1.13 7.01 72.01 0.50 1.63 16 24 O -0.40 -6.89 10.83 -148.98 -1.61 -8.50 16 25 C 0.06 0.71 7.01 72.01 0.50 1.21 16 26 C 0.01 0.10 4.87 86.31 0.42 0.52 16 27 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16 28 H 0.09 1.18 6.46 -2.39 -0.02 1.16 16 29 H 0.05 1.06 6.54 -2.39 -0.02 1.04 16 30 H 0.10 1.06 6.35 -2.39 -0.02 1.05 16 31 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.08 2.78 7.08 -2.39 -0.02 2.77 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 37 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 38 H 0.01 0.55 7.97 -2.39 -0.02 0.53 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 42 H 0.15 3.17 3.61 -2.39 -0.01 3.16 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 44 H 0.05 0.89 6.52 -2.38 -0.02 0.88 16 45 H 0.07 1.54 6.56 -2.38 -0.02 1.52 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 49 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.11 0.86 6.19 -2.39 -0.01 0.85 16 51 H 0.05 0.62 6.44 -2.39 -0.02 0.60 16 Total: -1.00 -69.06 374.00 0.27 -68.79 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.91 Total: 13.50 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.39 Total: 12.67 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -7.40 Total: -111.65 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.66 Total: -29.33 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.06 0.27 -68.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.917 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds