Wall clock time and date at job start Fri Apr 10 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46779 * 2 1 4 4 N 1.46499 * 109.47163 * 119.99906 * 2 1 3 5 5 C 1.34779 * 119.99872 * 85.00260 * 4 2 1 6 6 O 1.21286 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00201 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47592 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47103 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.47379 * 210.00314 * 21 19 17 24 24 H 1.48497 * 109.46980 * 330.00281 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.47441 * 59.99932 * 1 2 3 28 28 H 1.08995 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46854 * 299.99729 * 1 2 3 30 30 H 1.09001 * 109.46854 * 240.00271 * 2 1 3 31 31 H 1.09002 * 109.47015 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47151 * 299.99696 * 3 2 1 33 33 H 1.08993 * 109.47790 * 60.00232 * 3 2 1 34 34 H 0.96992 * 119.99793 * 264.99891 * 4 2 1 35 35 H 1.09002 * 109.47210 * 59.99599 * 7 5 4 36 36 H 1.09001 * 109.46665 * 299.99857 * 7 5 4 37 37 H 1.09002 * 109.47103 * 59.99616 * 8 7 5 38 38 H 1.08998 * 109.46862 * 300.00428 * 8 7 5 39 39 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 40 40 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 41 41 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 42 42 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 43 43 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 44 44 H 1.08999 * 109.42153 * 173.94686 * 14 13 12 45 45 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 46 46 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 47 47 H 0.96998 * 120.00461 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 49 49 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 50 50 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 51 51 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -2.0322 1.1944 6 8 1.8583 -2.6678 0.2026 7 6 2.6500 -2.7426 2.4246 8 6 2.7009 -4.2485 2.1591 9 6 3.2120 -4.9696 3.4079 10 6 3.2615 -6.4530 3.1465 11 8 2.9218 -6.8902 2.0675 12 7 3.6841 -7.2935 4.1116 13 6 4.1073 -6.7837 5.4246 14 6 3.3549 -7.5679 6.5114 15 7 3.5686 -9.0068 6.3062 16 6 3.0138 -9.7857 7.4212 17 6 3.7821 -9.4778 8.6805 18 1 4.6005 -8.7734 8.6552 19 6 3.4396 -10.0943 9.8652 20 7 2.4427 -10.9515 9.8962 21 14 4.3916 -9.7120 11.4264 22 1 3.7553 -8.5672 12.1263 23 1 4.3836 -10.9018 12.3149 24 1 5.7925 -9.3631 11.0789 25 6 3.0079 -9.4510 5.0232 26 6 3.7407 -8.7444 3.8772 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 2.2491 -0.1823 1.9894 35 1 1.9779 -2.5437 3.2593 36 1 3.6494 -2.3825 2.6690 37 1 3.3728 -4.4477 1.3242 38 1 1.7014 -4.6082 1.9148 39 1 2.5404 -4.7704 4.2430 40 1 4.2116 -4.6097 3.6516 41 1 5.1814 -6.9254 5.5437 42 1 3.8642 -5.7239 5.5015 43 1 2.2894 -7.3464 6.4521 44 1 3.7325 -7.2805 7.4927 45 1 1.9654 -9.5229 7.5618 46 1 3.0947 -10.8493 7.1972 47 1 2.2020 -11.3856 10.7296 48 1 1.9471 -9.2033 4.9846 49 1 3.1338 -10.5293 4.9252 50 1 3.2551 -8.9817 2.9306 51 1 4.7803 -9.0708 3.8507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:44 Heat of formation + Delta-G solvation = -84.841888 kcal Electronic energy + Delta-G solvation = -27393.320870 eV Core-core repulsion = 23519.935872 eV Total energy + Delta-G solvation = -3873.384998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24891 -39.84837 -37.57451 -36.43456 -34.40636 -34.38077 -32.45824 -31.98066 -30.87331 -28.91354 -27.87971 -27.68249 -25.49317 -23.64951 -23.03616 -21.93465 -21.34147 -20.64687 -20.33194 -18.61060 -17.38150 -16.95598 -16.47108 -16.40329 -16.23741 -15.56614 -15.38054 -14.78445 -14.70893 -14.43836 -14.25431 -14.08874 -13.80605 -13.63456 -13.40637 -13.27610 -12.91744 -12.81974 -12.64589 -12.38717 -12.14903 -12.05198 -11.85100 -11.81473 -11.56532 -11.40645 -11.29778 -11.06794 -10.96454 -10.91161 -10.75720 -10.63850 -10.54528 -10.09098 -9.91043 -9.56923 -9.45678 -9.29542 -8.52112 -8.41263 -7.34208 -6.08403 -4.10714 2.39746 2.77473 2.79271 3.19237 3.26968 3.34052 3.37496 4.30844 4.36427 4.46177 4.51261 4.59257 4.76772 4.78442 4.80290 4.86071 5.10174 5.17013 5.18523 5.22955 5.26247 5.29306 5.31949 5.34143 5.39020 5.46838 5.48326 5.55194 5.64857 5.66653 5.77829 5.82382 5.90078 5.98426 6.05159 6.13345 6.27066 6.28748 6.44151 6.44884 6.71002 7.16214 7.20486 7.26083 7.59159 7.72288 7.96254 7.99755 8.10272 8.32913 8.45280 8.96419 9.53889 11.02340 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.001884 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.944363 B =14857.153474 C =15654.384781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.512 3.488 6 O -0.534 6.534 7 C -0.141 4.141 8 C -0.088 4.088 9 C -0.140 4.140 10 C 0.512 3.488 11 O -0.548 6.548 12 N -0.610 5.610 13 C 0.109 3.891 14 C 0.050 3.950 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.041 3.959 26 C 0.117 3.883 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.097 0.903 45 H -0.009 1.009 46 H 0.032 0.968 47 H 0.262 0.738 48 H 0.026 0.974 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 23.747 -14.726 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.386 5.386 5 C 0.299 3.701 6 O -0.409 6.409 7 C -0.181 4.181 8 C -0.126 4.126 9 C -0.180 4.180 10 C 0.300 3.700 11 O -0.426 6.426 12 N -0.344 5.344 13 C -0.014 4.014 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.233 0.767 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.115 0.885 45 H 0.009 0.991 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.099 0.901 50 H 0.105 0.895 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.538 22.830 -15.919 27.837 hybrid contribution -0.367 0.501 1.600 1.716 sum 0.170 23.331 -14.319 27.375 Atomic orbital electron populations 1.22189 0.95287 1.02763 1.02019 1.20930 0.94228 0.92788 0.89092 1.22074 1.01703 0.95069 1.02939 1.46183 1.68390 1.07227 1.16766 1.20812 0.77255 0.82016 0.90042 1.90740 1.49189 1.65795 1.35199 1.21716 1.03110 0.97010 0.96308 1.21064 1.03843 0.90846 0.96876 1.21699 1.03630 0.92337 1.00337 1.20610 0.76794 0.88809 0.83803 1.90688 1.48957 1.78609 1.24389 1.48269 1.64631 1.07533 1.13944 1.22105 1.00035 0.97631 0.81629 1.22416 0.97250 0.89619 0.98684 1.62072 1.58843 1.02822 1.02331 1.19732 0.93203 0.93096 0.87161 1.21131 1.16167 1.25313 0.92242 0.91799 1.24999 0.95282 0.95133 0.99183 1.69955 1.28267 1.28309 1.27098 0.86494 0.80321 0.77741 0.82825 1.20752 1.21254 1.19752 1.22412 0.95946 0.99795 0.90669 1.21745 1.01272 0.78717 0.98774 0.91685 0.91985 0.92510 0.89490 0.91974 0.90960 0.92050 0.76677 0.88706 0.88739 0.90455 0.90445 0.88831 0.88883 0.90604 0.90155 0.95702 0.88516 0.99113 0.95006 0.92856 0.95576 0.90110 0.89456 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.48 37.16 0.35 -0.72 16 2 C 0.13 0.87 3.18 -67.93 -0.22 0.65 16 3 C -0.16 -0.62 9.38 37.15 0.35 -0.27 16 4 N -0.73 -4.70 5.08 -53.81 -0.27 -4.98 16 5 C 0.51 4.88 7.79 -10.99 -0.09 4.79 16 6 O -0.53 -7.60 15.65 5.55 0.09 -7.51 16 7 C -0.14 -1.00 5.70 -27.89 -0.16 -1.16 16 8 C -0.09 -0.94 3.79 -26.74 -0.10 -1.05 16 9 C -0.14 -1.40 4.06 -27.88 -0.11 -1.52 16 10 C 0.51 7.54 7.71 -10.98 -0.08 7.46 16 11 O -0.55 -10.11 15.43 5.56 0.09 -10.02 16 12 N -0.61 -9.10 3.00 -172.16 -0.52 -9.62 16 13 C 0.11 1.47 6.53 -3.37 -0.02 1.45 16 14 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 15 N -0.54 -10.99 4.62 -235.44 -1.09 -12.08 16 16 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 17 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 18 H 0.06 1.67 7.13 -52.48 -0.37 1.30 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.04 0.74 5.62 -3.68 -0.02 0.72 16 26 C 0.12 1.87 6.60 -3.58 -0.02 1.84 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.75 7.58 -51.93 -0.39 0.35 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.40 1.39 8.60 -40.82 -0.35 1.04 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 38 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 40 H 0.09 0.72 7.99 -51.93 -0.41 0.30 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 0.81 6.02 -51.93 -0.31 0.49 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 45 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 50 H 0.09 1.40 7.06 -51.93 -0.37 1.04 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -34.70 406.77 -9.67 -44.37 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -9.25 Total: -2.14 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.55 Total: 5.32 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -1.14 Total: -52.03 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.70 -9.67 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.470 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds