Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46779 * 2 1 4 4 N 1.46499 * 109.47163 * 119.99906 * 2 1 3 5 5 C 1.34779 * 119.99872 * 85.00260 * 4 2 1 6 6 O 1.21286 * 120.00040 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00201 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47592 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47103 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.47379 * 210.00314 * 21 19 17 24 24 H 1.48497 * 109.46980 * 330.00281 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.47441 * 59.99932 * 1 2 3 28 28 H 1.08995 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46854 * 299.99729 * 1 2 3 30 30 H 1.09001 * 109.46854 * 240.00271 * 2 1 3 31 31 H 1.09002 * 109.47015 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47151 * 299.99696 * 3 2 1 33 33 H 1.08993 * 109.47790 * 60.00232 * 3 2 1 34 34 H 0.96992 * 119.99793 * 264.99891 * 4 2 1 35 35 H 1.09002 * 109.47210 * 59.99599 * 7 5 4 36 36 H 1.09001 * 109.46665 * 299.99857 * 7 5 4 37 37 H 1.09002 * 109.47103 * 59.99616 * 8 7 5 38 38 H 1.08998 * 109.46862 * 300.00428 * 8 7 5 39 39 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 40 40 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 41 41 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 42 42 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 43 43 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 44 44 H 1.08999 * 109.42153 * 173.94686 * 14 13 12 45 45 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 46 46 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 47 47 H 0.96998 * 120.00461 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 49 49 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 50 50 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 51 51 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1472 -2.0322 1.1944 6 8 1.8583 -2.6678 0.2026 7 6 2.6500 -2.7426 2.4246 8 6 2.7009 -4.2485 2.1591 9 6 3.2120 -4.9696 3.4079 10 6 3.2615 -6.4530 3.1465 11 8 2.9218 -6.8902 2.0675 12 7 3.6841 -7.2935 4.1116 13 6 4.1073 -6.7837 5.4246 14 6 3.3549 -7.5679 6.5114 15 7 3.5686 -9.0068 6.3062 16 6 3.0138 -9.7857 7.4212 17 6 3.7821 -9.4778 8.6805 18 1 4.6005 -8.7734 8.6552 19 6 3.4396 -10.0943 9.8652 20 7 2.4427 -10.9515 9.8962 21 14 4.3916 -9.7120 11.4264 22 1 3.7553 -8.5672 12.1263 23 1 4.3836 -10.9018 12.3149 24 1 5.7925 -9.3631 11.0789 25 6 3.0079 -9.4510 5.0232 26 6 3.7407 -8.7444 3.8772 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 2.2491 -0.1823 1.9894 35 1 1.9779 -2.5437 3.2593 36 1 3.6494 -2.3825 2.6690 37 1 3.3728 -4.4477 1.3242 38 1 1.7014 -4.6082 1.9148 39 1 2.5404 -4.7704 4.2430 40 1 4.2116 -4.6097 3.6516 41 1 5.1814 -6.9254 5.5437 42 1 3.8642 -5.7239 5.5015 43 1 2.2894 -7.3464 6.4521 44 1 3.7325 -7.2805 7.4927 45 1 1.9654 -9.5229 7.5618 46 1 3.0947 -10.8493 7.1972 47 1 2.2020 -11.3856 10.7296 48 1 1.9471 -9.2033 4.9846 49 1 3.1338 -10.5293 4.9252 50 1 3.2551 -8.9817 2.9306 51 1 4.7803 -9.0708 3.8507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -110.286063 kcal Electronic energy + Delta-G solvation = -27394.424213 eV Core-core repulsion = 23519.935872 eV Total energy + Delta-G solvation = -3874.488340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26392 -40.76658 -39.00657 -37.06037 -35.94784 -35.26849 -34.37252 -32.67269 -32.12650 -30.19401 -29.17126 -28.10433 -27.11580 -24.81110 -24.32615 -23.44186 -22.11946 -21.64273 -21.25544 -19.80131 -18.47817 -18.29424 -17.90873 -17.20925 -17.00953 -16.69917 -16.64683 -16.28068 -15.99736 -15.52994 -15.31098 -15.29003 -15.04617 -14.82810 -14.41492 -14.22216 -14.02197 -13.79162 -13.60651 -13.35255 -13.07741 -13.07556 -12.79093 -12.78137 -12.70771 -12.59492 -12.48541 -12.31634 -12.29260 -12.20190 -12.09055 -11.91603 -11.74562 -11.70095 -11.26728 -10.93031 -10.70927 -10.60643 -10.08151 -9.73643 -9.04885 -8.18621 -6.29386 1.44912 1.46799 1.58102 1.64628 1.70661 1.97506 2.31472 2.42718 3.14025 3.24469 3.53118 3.75399 3.94953 4.01619 4.05580 4.08354 4.08745 4.15545 4.24774 4.31409 4.32469 4.46900 4.48096 4.61637 4.63372 4.71977 4.72605 4.74195 4.75207 4.81093 4.88388 4.93464 4.96812 5.04611 5.05786 5.18368 5.21857 5.24271 5.26451 5.31571 5.38988 5.50354 5.61257 5.65349 6.03332 6.25578 6.48481 6.56818 6.63841 6.86848 7.18219 7.35688 7.40891 8.92753 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021112 B = 0.001884 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.944363 B =14857.153474 C =15654.384781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.716 5.716 5 C 0.503 3.497 6 O -0.594 6.594 7 C -0.130 4.130 8 C -0.083 4.083 9 C -0.130 4.130 10 C 0.505 3.495 11 O -0.594 6.594 12 N -0.614 5.614 13 C 0.120 3.880 14 C 0.046 3.954 15 N -0.538 5.538 16 C 0.207 3.793 17 C -0.520 4.520 18 H 0.073 0.927 19 C -0.001 4.001 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.045 3.955 26 C 0.125 3.875 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.015 0.985 44 H 0.090 0.910 45 H -0.042 1.042 46 H 0.002 0.998 47 H 0.263 0.737 48 H 0.012 0.988 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 27.477 -13.047 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.292 3.708 6 O -0.474 6.474 7 C -0.169 4.169 8 C -0.122 4.122 9 C -0.169 4.169 10 C 0.295 3.705 11 O -0.475 6.475 12 N -0.347 5.347 13 C -0.002 4.002 14 C -0.083 4.083 15 N -0.263 5.263 16 C 0.080 3.920 17 C -0.558 4.558 18 H 0.091 0.909 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.185 1.185 25 C -0.084 4.084 26 C 0.002 3.998 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.255 0.745 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.033 0.967 44 H 0.108 0.892 45 H -0.024 1.024 46 H 0.020 0.980 47 H 0.072 0.928 48 H 0.030 0.970 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.492 26.632 -14.216 30.291 hybrid contribution -1.032 -0.673 0.999 1.587 sum 1.459 25.959 -13.217 29.166 Atomic orbital electron populations 1.22153 0.95355 1.01038 1.03311 1.20978 0.94211 0.94219 0.88171 1.22008 1.01817 0.92894 1.04114 1.46079 1.66975 1.06461 1.17431 1.21375 0.76544 0.82805 0.90108 1.90725 1.52003 1.67165 1.37514 1.21699 1.05792 0.93755 0.95686 1.20926 1.01050 0.93738 0.96507 1.21769 1.06455 0.88164 1.00502 1.21543 0.75292 0.90768 0.82860 1.90678 1.50733 1.79724 1.26374 1.48394 1.64611 1.06957 1.14726 1.22186 0.99858 0.99247 0.78946 1.22520 0.97447 0.88004 1.00298 1.62016 1.58343 1.04355 1.01596 1.19390 0.91526 0.92138 0.88897 1.21456 1.16251 1.25242 0.92842 0.90931 1.25972 0.96178 0.94805 1.02953 1.70105 1.30067 1.29566 1.28078 0.85326 0.79239 0.77566 0.78134 1.19629 1.21417 1.18460 1.22412 0.95420 1.00116 0.90500 1.21550 1.01226 0.79864 0.97150 0.90626 0.95125 0.91013 0.92321 0.91675 0.90277 0.90393 0.74495 0.85668 0.85093 0.93362 0.94046 0.86060 0.84974 0.89485 0.85393 0.96666 0.89225 1.02386 0.98028 0.92810 0.96969 0.90461 0.89973 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 71.98 0.68 -1.33 16 2 C 0.13 1.57 3.18 44.99 0.14 1.71 16 3 C -0.15 -0.81 9.38 71.98 0.68 -0.13 16 4 N -0.72 -7.88 5.08 -442.53 -2.25 -10.12 16 5 C 0.50 9.14 7.79 87.66 0.68 9.82 16 6 O -0.59 -17.81 15.65 -3.05 -0.05 -17.86 16 7 C -0.13 -1.42 5.70 29.84 0.17 -1.25 16 8 C -0.08 -1.69 3.79 30.59 0.12 -1.57 16 9 C -0.13 -2.12 4.06 29.85 0.12 -2.00 16 10 C 0.50 14.08 7.71 87.66 0.68 14.76 16 11 O -0.59 -22.22 15.43 -3.03 -0.05 -22.27 16 12 N -0.61 -17.13 3.00 -816.99 -2.45 -19.58 16 13 C 0.12 2.80 6.53 86.50 0.57 3.36 16 14 C 0.05 1.56 5.47 86.54 0.47 2.03 16 15 N -0.54 -22.24 4.62 -898.81 -4.15 -26.39 16 16 C 0.21 10.80 4.72 85.56 0.40 11.20 16 17 C -0.52 -28.07 8.41 25.60 0.22 -27.86 16 18 H 0.07 3.72 7.13 -2.91 -0.02 3.70 16 19 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 20 N -0.94 -55.67 13.29 21.44 0.28 -55.38 16 21 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 C 0.04 1.65 5.62 86.40 0.49 2.14 16 26 C 0.13 3.94 6.60 86.36 0.57 4.51 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 1.06 7.58 -2.39 -0.02 1.04 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.42 1.45 8.60 -92.71 -0.80 0.65 16 35 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16 38 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 39 H 0.12 1.41 7.67 -2.39 -0.02 1.39 16 40 H 0.13 1.23 7.99 -2.39 -0.02 1.21 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.13 1.81 6.02 -2.39 -0.01 1.80 16 43 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 3.17 6.67 -2.39 -0.02 3.15 16 45 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 46 H 0.00 0.09 7.97 -2.39 -0.02 0.07 16 47 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 2.85 7.99 -2.39 -0.02 2.83 16 50 H 0.08 2.69 7.06 -2.39 -0.02 2.67 16 51 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -82.15 406.77 -0.09 -82.24 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.10 Total: 9.14 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.44 Total: 15.79 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -8.57 Total: -111.49 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.09 Total: -40.12 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -82.15 -0.09 -82.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.044 kcal (2) G-P(sol) polarization free energy of solvation -82.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds