Wall clock time and date at job start Fri Apr 10 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 N 1.46493 * 109.47360 * 120.00258 * 2 1 3 5 5 C 1.34778 * 120.00178 * 85.00017 * 4 2 1 6 6 O 1.21281 * 119.99984 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00407 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47582 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47480 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47093 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00358 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99939 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99994 * 179.97438 * 12 10 9 14 14 C 1.53076 * 109.43981 * 84.79590 * 13 12 10 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 204.99610 * 13 12 10 27 27 H 1.08997 * 109.46758 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47091 * 299.99503 * 1 2 3 29 29 H 1.08995 * 109.47426 * 59.99954 * 1 2 3 30 30 H 1.09003 * 109.47091 * 240.00497 * 2 1 3 31 31 H 1.08999 * 109.46841 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47372 * 300.00326 * 3 2 1 33 33 H 1.09003 * 109.46858 * 60.00354 * 3 2 1 34 34 H 0.96997 * 120.00332 * 265.00048 * 4 2 1 35 35 H 1.09007 * 109.47057 * 59.99648 * 7 5 4 36 36 H 1.09000 * 109.47401 * 300.00123 * 7 5 4 37 37 H 1.09007 * 109.47112 * 59.99805 * 8 7 5 38 38 H 1.09000 * 109.47379 * 300.00194 * 8 7 5 39 39 H 1.09003 * 109.46651 * 60.00427 * 9 8 7 40 40 H 1.09000 * 109.47238 * 300.00606 * 9 8 7 41 41 H 0.97007 * 119.99982 * 359.97438 * 12 10 9 42 42 H 1.08994 * 109.45870 * 324.97548 * 13 12 10 43 43 H 1.09005 * 109.39190 * 61.35477 * 14 13 12 44 44 H 1.09004 * 109.62337 * 301.25270 * 14 13 12 45 45 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 46 46 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 49 49 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 50 50 H 1.09003 * 109.49897 * 58.68032 * 26 13 12 51 51 H 1.09000 * 109.52987 * 298.59684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8583 -2.6678 0.2025 7 6 2.6490 -2.7428 2.4248 8 6 2.7000 -4.2486 2.1591 9 6 3.2101 -4.9699 3.4083 10 6 3.2609 -6.4531 3.1463 11 8 2.9230 -6.8902 2.0667 12 7 3.6820 -7.2939 4.1119 13 6 3.7309 -8.7358 3.8574 14 6 5.0535 -9.0876 3.1716 15 6 5.0879 -10.5909 2.8793 16 7 4.8388 -11.3242 4.1279 17 6 5.7082 -12.2928 4.5536 18 1 5.8074 -12.5037 5.6081 19 6 6.4621 -13.0034 3.6298 20 7 6.1207 -12.9986 2.3586 21 14 7.9613 -13.9664 4.1905 22 1 8.1288 -13.8112 5.6579 23 1 7.7776 -15.4032 3.8630 24 1 9.1688 -13.4509 3.4967 25 6 3.6388 -10.9989 4.9108 26 6 3.6218 -9.4916 5.1837 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 2.2491 -0.1824 1.9894 35 1 1.9761 -2.5439 3.2590 36 1 3.6481 -2.3827 2.6702 37 1 3.3727 -4.4478 1.3248 38 1 1.7007 -4.6084 1.9140 39 1 2.5377 -4.7708 4.2428 40 1 4.2094 -4.6101 3.6530 41 1 3.9527 -6.9443 4.9753 42 1 2.9016 -9.0184 3.2091 43 1 5.8828 -8.8256 3.8287 44 1 5.1400 -8.5332 2.2371 45 1 6.0664 -10.8640 2.4842 46 1 4.3170 -10.8390 2.1498 47 1 6.6473 -13.4954 1.7131 48 1 2.7483 -11.2783 4.3478 49 1 3.6598 -11.5431 5.8549 50 1 2.6896 -9.2223 5.6803 51 1 4.4640 -9.2282 5.8235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:03 Heat of formation + Delta-G solvation = -81.145816 kcal Electronic energy + Delta-G solvation = -27290.595984 eV Core-core repulsion = 23417.371260 eV Total energy + Delta-G solvation = -3873.224724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.19371 -39.60113 -37.37248 -36.42931 -34.51066 -34.19393 -32.17197 -31.90068 -30.11570 -29.62289 -28.30208 -27.68531 -25.04605 -23.39469 -22.21203 -21.84653 -21.22683 -20.59048 -20.05205 -19.20948 -17.53227 -16.91565 -16.64428 -16.35654 -16.16271 -15.67231 -15.21740 -14.75605 -14.63981 -14.24490 -13.90868 -13.77044 -13.49840 -13.40384 -13.28239 -12.98954 -12.89103 -12.71690 -12.59138 -12.43531 -12.06243 -12.04529 -11.81746 -11.59817 -11.45448 -11.40443 -11.10491 -10.92352 -10.88625 -10.72307 -10.35826 -10.19609 -10.09277 -10.03009 -9.74525 -9.72489 -9.45668 -9.36805 -8.65087 -8.39208 -6.65708 -5.76125 -3.19472 2.40135 2.79942 2.88991 3.38247 3.46106 3.46533 3.48411 4.30878 4.48925 4.51203 4.58498 4.66911 4.78617 4.79212 4.89760 5.09801 5.17511 5.22005 5.24086 5.31112 5.31820 5.36914 5.41811 5.47181 5.48751 5.53782 5.67038 5.67761 5.81974 5.86710 5.99172 6.11838 6.13592 6.26957 6.29427 6.41451 6.48021 6.65145 6.68050 6.81282 6.95487 6.99714 7.16062 7.41117 7.71159 7.80245 7.82007 7.96851 8.47327 8.51513 9.23333 9.86732 10.43709 11.32376 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.001735 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.272550 B =16134.269968 C =16437.105414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.511 3.489 6 O -0.531 6.531 7 C -0.140 4.140 8 C -0.090 4.090 9 C -0.141 4.141 10 C 0.506 3.494 11 O -0.537 6.537 12 N -0.728 5.728 13 C 0.150 3.850 14 C -0.146 4.146 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.394 0.606 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 29.785 3.474 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.386 5.386 5 C 0.297 3.703 6 O -0.406 6.406 7 C -0.180 4.180 8 C -0.128 4.128 9 C -0.181 4.181 10 C 0.292 3.708 11 O -0.413 6.413 12 N -0.378 5.378 13 C 0.046 3.954 14 C -0.186 4.186 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.227 0.773 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.039 0.961 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.413 28.880 1.815 30.135 hybrid contribution 1.053 0.026 1.091 1.516 sum -7.360 28.906 2.906 29.970 Atomic orbital electron populations 1.22186 0.95296 1.02761 1.01983 1.20933 0.94216 0.92790 0.89135 1.22075 1.01721 0.95069 1.02906 1.46180 1.68470 1.07224 1.16741 1.20816 0.77332 0.82020 0.90091 1.90753 1.48987 1.65763 1.35147 1.21711 1.02990 0.97116 0.96228 1.21069 1.03973 0.90717 0.97031 1.21685 1.03479 0.92681 1.00252 1.20593 0.77122 0.88621 0.84497 1.90739 1.47854 1.78587 1.24135 1.46355 1.67155 1.08172 1.16108 1.21023 0.99443 0.77517 0.97373 1.22552 0.95733 1.01018 0.99296 1.20753 1.01978 0.85094 0.87514 1.44101 1.22254 1.40987 1.24179 1.19211 1.15879 1.11659 0.91622 0.91621 1.25070 1.00731 0.97992 0.95857 1.70047 1.38820 1.44149 1.01477 0.86236 0.83098 0.79434 0.78065 1.20272 1.21725 1.21583 1.20840 0.90325 0.90923 0.95849 1.22315 1.00559 0.99110 0.95780 0.91973 0.92562 0.91673 0.89439 0.91965 0.90944 0.92102 0.76755 0.88865 0.88817 0.90300 0.90379 0.89160 0.89075 0.77320 0.90161 0.92794 0.92851 0.89321 0.96145 0.93621 0.96241 0.92375 0.92708 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.13 0.87 3.18 -67.93 -0.22 0.66 16 3 C -0.16 -0.62 9.38 37.16 0.35 -0.27 16 4 N -0.73 -4.65 5.08 -53.81 -0.27 -4.92 16 5 C 0.51 4.87 7.79 -10.99 -0.09 4.79 16 6 O -0.53 -7.72 15.64 5.56 0.09 -7.63 16 7 C -0.14 -0.96 5.70 -27.89 -0.16 -1.12 16 8 C -0.09 -0.96 3.79 -26.73 -0.10 -1.06 16 9 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 10 C 0.51 7.36 7.79 -10.98 -0.09 7.27 16 11 O -0.54 -10.52 15.64 5.56 0.09 -10.44 16 12 N -0.73 -10.05 5.08 -53.75 -0.27 -10.32 16 13 C 0.15 2.65 2.41 -67.87 -0.16 2.49 16 14 C -0.15 -2.98 5.66 -26.60 -0.15 -3.13 16 15 C 0.17 4.30 5.30 -3.71 -0.02 4.29 16 16 N -0.59 -14.99 3.00 -172.33 -0.52 -15.50 16 17 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 18 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -26.69 11.20 55.49 0.62 -26.07 16 21 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 26 C -0.14 -2.30 5.55 -26.62 -0.15 -2.45 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.40 1.29 8.60 -40.82 -0.35 0.94 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 4.10 8.60 -40.82 -0.35 3.74 16 42 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -35.98 408.24 -9.35 -45.33 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -9.37 Total: 1.41 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.84 Total: 5.20 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.44 Total: -56.81 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.98 -9.35 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.814 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds