Wall clock time and date at job start Fri Apr 10 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 N 1.46493 * 109.47360 * 120.00258 * 2 1 3 5 5 C 1.34778 * 120.00178 * 85.00017 * 4 2 1 6 6 O 1.21281 * 119.99984 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00407 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47582 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47480 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47093 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00358 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99939 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99994 * 179.97438 * 12 10 9 14 14 C 1.53076 * 109.43981 * 84.79590 * 13 12 10 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 204.99610 * 13 12 10 27 27 H 1.08997 * 109.46758 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47091 * 299.99503 * 1 2 3 29 29 H 1.08995 * 109.47426 * 59.99954 * 1 2 3 30 30 H 1.09003 * 109.47091 * 240.00497 * 2 1 3 31 31 H 1.08999 * 109.46841 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47372 * 300.00326 * 3 2 1 33 33 H 1.09003 * 109.46858 * 60.00354 * 3 2 1 34 34 H 0.96997 * 120.00332 * 265.00048 * 4 2 1 35 35 H 1.09007 * 109.47057 * 59.99648 * 7 5 4 36 36 H 1.09000 * 109.47401 * 300.00123 * 7 5 4 37 37 H 1.09007 * 109.47112 * 59.99805 * 8 7 5 38 38 H 1.09000 * 109.47379 * 300.00194 * 8 7 5 39 39 H 1.09003 * 109.46651 * 60.00427 * 9 8 7 40 40 H 1.09000 * 109.47238 * 300.00606 * 9 8 7 41 41 H 0.97007 * 119.99982 * 359.97438 * 12 10 9 42 42 H 1.08994 * 109.45870 * 324.97548 * 13 12 10 43 43 H 1.09005 * 109.39190 * 61.35477 * 14 13 12 44 44 H 1.09004 * 109.62337 * 301.25270 * 14 13 12 45 45 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 46 46 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 49 49 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 50 50 H 1.09003 * 109.49897 * 58.68032 * 26 13 12 51 51 H 1.09000 * 109.52987 * 298.59684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8583 -2.6678 0.2025 7 6 2.6490 -2.7428 2.4248 8 6 2.7000 -4.2486 2.1591 9 6 3.2101 -4.9699 3.4083 10 6 3.2609 -6.4531 3.1463 11 8 2.9230 -6.8902 2.0667 12 7 3.6820 -7.2939 4.1119 13 6 3.7309 -8.7358 3.8574 14 6 5.0535 -9.0876 3.1716 15 6 5.0879 -10.5909 2.8793 16 7 4.8388 -11.3242 4.1279 17 6 5.7082 -12.2928 4.5536 18 1 5.8074 -12.5037 5.6081 19 6 6.4621 -13.0034 3.6298 20 7 6.1207 -12.9986 2.3586 21 14 7.9613 -13.9664 4.1905 22 1 8.1288 -13.8112 5.6579 23 1 7.7776 -15.4032 3.8630 24 1 9.1688 -13.4509 3.4967 25 6 3.6388 -10.9989 4.9108 26 6 3.6218 -9.4916 5.1837 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 2.2491 -0.1824 1.9894 35 1 1.9761 -2.5439 3.2590 36 1 3.6481 -2.3827 2.6702 37 1 3.3727 -4.4478 1.3248 38 1 1.7007 -4.6084 1.9140 39 1 2.5377 -4.7708 4.2428 40 1 4.2094 -4.6101 3.6530 41 1 3.9527 -6.9443 4.9753 42 1 2.9016 -9.0184 3.2091 43 1 5.8828 -8.8256 3.8287 44 1 5.1400 -8.5332 2.2371 45 1 6.0664 -10.8640 2.4842 46 1 4.3170 -10.8390 2.1498 47 1 6.6473 -13.4954 1.7131 48 1 2.7483 -11.2783 4.3478 49 1 3.6598 -11.5431 5.8549 50 1 2.6896 -9.2223 5.6803 51 1 4.4640 -9.2282 5.8235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:02 Heat of formation + Delta-G solvation = -107.819600 kcal Electronic energy + Delta-G solvation = -27291.752646 eV Core-core repulsion = 23417.371260 eV Total energy + Delta-G solvation = -3874.381386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.07419 -40.71150 -38.98997 -37.06937 -36.02411 -35.16775 -33.90238 -32.59993 -31.80640 -31.30081 -29.21099 -28.10800 -26.87265 -24.51719 -23.91745 -23.22475 -21.93576 -21.35239 -21.25644 -20.77246 -18.87203 -18.24272 -17.66362 -17.18465 -17.10087 -16.90547 -16.60764 -16.11409 -15.64159 -15.36903 -15.26276 -15.09171 -14.80366 -14.76838 -14.38980 -14.23005 -14.09795 -13.80994 -13.42435 -13.19641 -13.07937 -13.05727 -12.79729 -12.76631 -12.64639 -12.56150 -12.39407 -12.29827 -12.12459 -12.01584 -11.92104 -11.85918 -11.69150 -11.53330 -11.38388 -10.93011 -10.68404 -10.60145 -10.08809 -9.94688 -8.72603 -7.88191 -5.35293 1.46735 1.47973 1.59280 1.70304 1.76254 2.15679 2.41824 2.51022 3.27839 3.63951 3.73055 3.83205 3.91232 3.99173 4.06769 4.10576 4.12358 4.16125 4.31901 4.34276 4.46827 4.63203 4.65774 4.66693 4.71605 4.73152 4.74521 4.79889 4.80867 4.91364 4.93118 5.05015 5.07325 5.09507 5.13406 5.20146 5.25726 5.31041 5.31248 5.42031 5.45215 5.60283 5.62390 5.64194 5.68173 6.37525 6.63892 6.71499 7.11984 7.36155 7.42939 7.83046 8.36353 9.19116 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.001735 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.272550 B =16134.269968 C =16437.105414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 C -0.150 4.150 4 N -0.715 5.715 5 C 0.501 3.499 6 O -0.595 6.595 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.124 4.124 10 C 0.497 3.503 11 O -0.598 6.598 12 N -0.711 5.711 13 C 0.159 3.841 14 C -0.129 4.129 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.076 0.924 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.971 3.029 22 H -0.260 1.260 23 H -0.294 1.294 24 H -0.292 1.292 25 C 0.139 3.861 26 C -0.119 4.119 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.418 0.582 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.054 0.946 46 H -0.016 1.016 47 H 0.249 0.751 48 H 0.007 0.993 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 33.144 7.669 34.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.289 3.711 6 O -0.476 6.476 7 C -0.166 4.166 8 C -0.127 4.127 9 C -0.163 4.163 10 C 0.286 3.714 11 O -0.479 6.479 12 N -0.363 5.363 13 C 0.054 3.946 14 C -0.170 4.170 15 C 0.055 3.945 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.587 5.587 21 Si 0.799 3.201 22 H -0.184 1.184 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.013 3.987 26 C -0.158 4.158 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.002 0.998 47 H 0.058 0.942 48 H 0.025 0.975 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.936 32.328 6.120 33.845 hybrid contribution 0.819 -1.006 -0.259 1.323 sum -7.116 31.322 5.861 32.650 Atomic orbital electron populations 1.22144 0.95209 1.01047 1.03369 1.20978 0.94332 0.94220 0.88150 1.22008 1.01757 0.92863 1.04172 1.46063 1.67003 1.06420 1.17400 1.21450 0.76558 0.82840 0.90218 1.90738 1.51982 1.67225 1.37624 1.21689 1.05738 0.93561 0.95658 1.20955 1.01025 0.93966 0.96765 1.21704 1.06535 0.87655 1.00432 1.21686 0.75415 0.90952 0.83354 1.90734 1.50372 1.79952 1.26794 1.46052 1.66792 1.06175 1.17247 1.20607 0.96313 0.80355 0.97313 1.22290 0.98045 0.97255 0.99360 1.20455 0.98723 0.88189 0.87136 1.44346 1.23690 1.40895 1.24281 1.19633 1.15938 1.11404 0.92084 0.90631 1.25919 1.03689 0.99621 0.95905 1.70229 1.40103 1.45636 1.02759 0.85153 0.79134 0.77421 0.78409 1.18352 1.22135 1.21931 1.21071 0.88021 0.94257 0.95337 1.22104 1.03208 0.95320 0.95191 0.95147 0.90772 0.90709 0.92626 0.91792 0.90327 0.90189 0.74431 0.85101 0.85322 0.94262 0.93900 0.84873 0.85401 0.74499 0.93329 0.91701 0.94081 0.92744 0.99798 0.94221 0.97457 0.91230 0.88959 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 71.98 0.68 -1.32 16 2 C 0.13 1.61 3.18 44.99 0.14 1.75 16 3 C -0.15 -0.84 9.38 71.98 0.68 -0.16 16 4 N -0.72 -7.90 5.08 -442.54 -2.25 -10.15 16 5 C 0.50 9.30 7.79 87.65 0.68 9.98 16 6 O -0.60 -18.60 15.64 -3.03 -0.05 -18.65 16 7 C -0.13 -1.35 5.70 29.84 0.17 -1.18 16 8 C -0.09 -1.83 3.79 30.59 0.12 -1.71 16 9 C -0.12 -1.83 5.70 29.85 0.17 -1.66 16 10 C 0.50 13.79 7.79 87.66 0.68 14.47 16 11 O -0.60 -24.41 15.64 -3.01 -0.05 -24.45 16 12 N -0.71 -17.72 5.08 -442.36 -2.25 -19.97 16 13 C 0.16 5.51 2.41 45.03 0.11 5.62 16 14 C -0.13 -5.36 5.66 30.68 0.17 -5.19 16 15 C 0.18 9.50 5.30 86.36 0.46 9.95 16 16 N -0.61 -31.22 3.00 -699.11 -2.09 -33.31 16 17 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 18 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 19 C -0.06 -3.22 4.92 84.86 0.42 -2.81 16 20 N -0.94 -58.14 11.20 21.65 0.24 -57.90 16 21 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 C 0.14 5.68 6.52 86.36 0.56 6.24 16 26 C -0.12 -3.64 5.55 30.67 0.17 -3.47 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.06 7.58 -2.39 -0.02 1.05 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.42 1.26 8.60 -92.71 -0.80 0.47 16 35 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.13 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.04 1.10 8.06 -2.38 -0.02 1.09 16 38 H 0.04 1.17 8.06 -2.39 -0.02 1.15 16 39 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.42 6.63 8.60 -92.70 -0.80 5.83 16 42 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 43 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.05 3.19 6.06 -2.38 -0.01 3.18 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 50 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -88.44 408.24 0.92 -87.52 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.69 Total: 12.54 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.02 Total: 16.94 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.34 Total: -121.33 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.09 Total: -43.10 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -88.44 0.92 -87.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.301 kcal (2) G-P(sol) polarization free energy of solvation -88.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds