Wall clock time and date at job start Fri Apr 10 2020 18:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 O 1.42900 * 109.46799 * 240.00552 * 2 1 3 5 5 C 1.52993 * 109.47390 * 120.00581 * 2 1 3 6 6 N 1.46503 * 109.47468 * 185.00262 * 5 2 1 7 7 C 1.34765 * 120.00105 * 89.99640 * 6 5 2 8 8 O 1.21588 * 119.99856 * 176.84604 * 7 6 5 9 9 N 1.34776 * 120.00484 * 356.84562 * 7 6 5 10 10 C 1.46499 * 120.00392 * 185.11290 * 9 7 6 11 11 C 1.53043 * 109.46082 * 155.00087 * 10 9 7 12 12 C 1.53193 * 109.31336 * 181.38455 * 11 10 9 13 13 N 1.46927 * 108.89278 * 305.29698 * 12 11 10 14 14 C 1.36941 * 120.62775 * 233.67254 * 13 12 11 15 15 H 1.08001 * 119.99528 * 30.93506 * 14 13 12 16 16 C 1.38806 * 119.99942 * 210.93336 * 14 13 12 17 17 N 1.31614 * 120.00159 * 10.20103 * 16 14 13 18 18 Si 1.86804 * 120.00078 * 190.20248 * 16 14 13 19 19 H 1.48505 * 109.47071 * 89.99527 * 18 16 14 20 20 H 1.48493 * 109.47289 * 210.00157 * 18 16 14 21 21 H 1.48502 * 109.47045 * 330.00031 * 18 16 14 22 22 C 1.47197 * 118.55660 * 53.53693 * 13 12 11 23 23 C 1.53043 * 109.46027 * 275.06863 * 10 9 7 24 24 C 1.46502 * 119.99332 * 269.99665 * 6 5 2 25 25 C 1.52999 * 117.49522 * 196.90200 * 24 6 5 26 26 C 1.53006 * 60.00187 * 252.51527 * 25 24 6 27 27 H 1.08996 * 109.47328 * 299.99718 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99382 * 1 2 3 29 29 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46978 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47656 * 300.00309 * 3 2 1 32 32 H 1.09004 * 109.46949 * 60.00280 * 3 2 1 33 33 H 0.96703 * 114.00157 * 299.99693 * 4 2 1 34 34 H 1.09005 * 109.47538 * 64.99458 * 5 2 1 35 35 H 1.09008 * 109.47049 * 304.99914 * 5 2 1 36 36 H 0.97004 * 119.99516 * 5.11517 * 9 7 6 37 37 H 1.08998 * 109.44937 * 35.03504 * 10 9 7 38 38 H 1.08999 * 109.49605 * 61.43656 * 11 10 9 39 39 H 1.09003 * 109.49660 * 301.33714 * 11 10 9 40 40 H 1.09001 * 109.58212 * 65.15154 * 12 11 10 41 41 H 1.09003 * 109.58833 * 185.43361 * 12 11 10 42 42 H 0.97007 * 120.00323 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.53290 * 186.67490 * 22 13 12 44 44 H 1.08996 * 109.68134 * 66.37205 * 22 13 12 45 45 H 1.09004 * 109.49417 * 298.56584 * 23 10 9 46 46 H 1.09002 * 109.49650 * 58.63135 * 23 10 9 47 47 H 1.08999 * 115.55349 * 342.61284 * 24 6 5 48 48 H 1.09006 * 117.49985 * 0.02562 * 25 24 6 49 49 H 1.08996 * 117.49967 * 145.02619 * 25 24 6 50 50 H 1.08995 * 117.49503 * 252.51399 * 26 25 24 51 51 H 1.08995 * 117.51677 * 107.47932 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7213 1.2491 6 7 3.5001 -0.6179 1.3109 7 6 4.0757 0.4195 1.9500 8 8 5.2861 0.4755 2.0509 9 7 3.3098 1.3951 2.4774 10 6 3.9369 2.5775 3.0731 11 6 2.9586 3.7533 3.0231 12 6 3.6298 4.9965 3.6152 13 7 4.1169 4.6773 4.9641 14 6 3.7604 5.4515 6.0360 15 1 2.8020 5.9493 6.0474 16 6 4.6307 5.5963 7.1075 17 7 5.8693 5.1615 7.0128 18 14 4.0440 6.4084 8.6842 19 1 3.4882 5.3760 9.5956 20 1 5.1863 7.0891 9.3452 21 1 2.9909 7.4056 8.3652 22 6 4.9926 3.5069 5.1374 23 6 4.3060 2.2803 4.5283 24 6 4.3343 -1.6424 0.6777 25 6 5.8045 -1.7135 1.0954 26 6 5.4265 -1.1691 -0.2836 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.7209 -1.5951 -1.2331 34 1 1.7516 -1.7716 1.2054 35 1 1.6054 -0.2619 2.1369 36 1 2.3433 1.3143 2.4625 37 1 4.8379 2.8308 2.5144 38 1 2.0677 3.5102 3.6023 39 1 2.6780 3.9494 1.9882 40 1 4.4679 5.2943 2.9851 41 1 2.9071 5.8106 3.6707 42 1 6.4777 5.2630 7.7615 43 1 5.1683 3.3373 6.1998 44 1 5.9430 3.6816 4.6332 45 1 3.4024 2.0511 5.0932 46 1 4.9841 1.4277 4.5648 47 1 3.8309 -2.5807 0.4449 48 1 6.1509 -0.9984 1.8416 49 1 6.2686 -2.6988 1.1376 50 1 5.6419 -1.7963 -1.1486 51 1 5.5240 -0.0956 -0.4452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614711823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:16 Heat of formation + Delta-G solvation = -8.382809 kcal Electronic energy + Delta-G solvation = -30130.895100 eV Core-core repulsion = 26260.825616 eV Total energy + Delta-G solvation = -3870.069483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.87085 -38.41464 -37.79606 -36.22410 -34.77325 -33.75422 -32.10626 -31.76474 -29.97078 -29.29251 -27.62441 -26.49860 -25.03897 -23.10971 -22.25360 -22.14523 -21.47517 -20.91647 -19.77590 -19.15357 -18.04857 -16.96829 -16.42010 -16.37474 -15.74326 -15.27619 -15.23702 -14.82202 -14.41937 -14.24988 -13.96364 -13.64808 -13.46976 -13.14962 -12.97524 -12.85217 -12.64915 -12.50317 -12.38799 -12.23618 -12.12791 -11.94827 -11.54010 -11.44158 -11.31819 -11.00716 -10.91894 -10.84712 -10.75108 -10.42917 -10.32930 -10.20943 -10.17602 -10.02136 -9.74644 -9.62826 -9.24645 -8.68085 -8.44407 -8.18142 -6.60983 -5.75242 -3.23805 2.61828 3.27661 3.38417 3.44683 3.46265 3.86937 3.91113 4.09746 4.43647 4.49996 4.50885 4.64744 4.86472 4.94994 5.04060 5.13892 5.23524 5.28214 5.33892 5.44385 5.45303 5.48939 5.56749 5.61060 5.66741 5.68836 5.81350 5.84917 5.86662 6.06730 6.12129 6.15931 6.26991 6.37129 6.43287 6.52322 6.61906 6.68825 6.82613 6.85994 6.95340 7.00172 7.12605 7.38721 7.45293 7.75894 7.81502 8.09559 8.50027 8.81594 9.24372 9.85872 10.44408 11.32662 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003216 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.635599 B = 8703.974715 C = 9587.767482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 C -0.142 4.142 4 O -0.547 6.547 5 C 0.089 3.911 6 N -0.598 5.598 7 C 0.708 3.292 8 O -0.576 6.576 9 N -0.740 5.740 10 C 0.169 3.831 11 C -0.139 4.139 12 C 0.149 3.851 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.174 3.826 23 C -0.146 4.146 24 C 0.096 3.904 25 C -0.201 4.201 26 C -0.181 4.181 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.369 0.631 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.388 0.612 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.020 0.980 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.119 0.881 48 H 0.149 0.851 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 -15.082 -15.173 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.199 4.199 4 O -0.352 6.352 5 C -0.036 4.036 6 N -0.332 5.332 7 C 0.410 3.590 8 O -0.454 6.454 9 N -0.397 5.397 10 C 0.065 3.935 11 C -0.179 4.179 12 C 0.022 3.978 13 N -0.316 5.316 14 C -0.384 4.384 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.048 3.952 23 C -0.187 4.187 24 C -0.009 4.009 25 C -0.239 4.239 26 C -0.219 4.219 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.216 0.784 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.224 0.776 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.137 0.863 48 H 0.167 0.833 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.508 -14.381 -15.054 22.888 hybrid contribution -1.163 -0.339 0.876 1.494 sum -10.670 -14.721 -14.178 23.056 Atomic orbital electron populations 1.22473 0.95269 1.02521 1.03400 1.21750 0.92410 0.93868 0.85312 1.21935 1.02830 0.92771 1.02358 1.86657 1.77092 1.28241 1.43216 1.22247 0.81036 1.01764 0.98545 1.46320 1.04924 1.24632 1.57303 1.15946 0.85387 0.79507 0.78118 1.90699 1.12023 1.77617 1.65062 1.45962 1.09028 1.21270 1.63390 1.20897 0.95973 0.82253 0.94364 1.22355 0.98740 0.96994 0.99781 1.20832 0.96144 0.93204 0.87648 1.44120 1.57236 1.28549 1.01656 1.19169 0.98458 1.24732 0.96010 0.91797 1.25167 0.94778 0.99610 0.99869 1.69973 1.03856 1.50033 1.30869 0.86264 0.77609 0.79115 0.83567 1.21479 1.21686 1.20451 1.20823 0.90503 0.82729 1.01194 1.22577 1.00770 1.00809 0.94531 1.21274 0.87254 0.91064 1.01310 1.24173 0.95819 1.03296 1.00574 1.23134 1.03567 1.01833 0.93409 0.91259 0.91346 0.92233 0.91272 0.92001 0.90923 0.78422 0.89947 0.89960 0.77636 0.90187 0.92076 0.92722 0.96219 0.92453 0.93564 0.89160 0.96166 0.93043 0.92701 0.86292 0.83334 0.90052 0.89331 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 8.81 37.16 0.33 -0.71 16 2 C 0.11 0.86 1.18 -90.62 -0.11 0.75 16 3 C -0.14 -1.44 7.33 37.16 0.27 -1.16 16 4 O -0.55 -4.71 12.54 -35.23 -0.44 -5.15 16 5 C 0.09 0.71 4.69 -4.04 -0.02 0.70 16 6 N -0.60 -6.96 2.50 -171.80 -0.43 -7.39 16 7 C 0.71 10.77 6.36 -86.93 -0.55 10.22 16 8 O -0.58 -10.88 11.87 5.29 0.06 -10.82 16 9 N -0.74 -10.42 3.53 -58.64 -0.21 -10.63 16 10 C 0.17 2.93 2.38 -67.89 -0.16 2.77 16 11 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 12 C 0.15 3.06 6.50 -3.71 -0.02 3.03 16 13 N -0.59 -14.79 3.00 -172.10 -0.52 -15.31 16 14 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 15 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 16 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 17 N -0.90 -26.44 11.01 55.49 0.61 -25.83 16 18 Si 0.90 21.68 29.57 -169.99 -5.03 16.65 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.17 4.26 5.27 -3.56 -0.02 4.24 16 23 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 24 C 0.10 1.07 6.22 -67.93 -0.42 0.64 16 25 C -0.20 -2.61 9.64 -26.73 -0.26 -2.87 16 26 C -0.18 -2.21 9.90 -26.72 -0.26 -2.48 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.91 6.20 -51.93 -0.32 0.59 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.68 6.31 -51.93 -0.33 0.35 16 33 H 0.37 1.77 9.05 45.56 0.41 2.18 16 34 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.08 0.63 6.42 -51.92 -0.33 0.29 16 36 H 0.39 4.47 4.66 -40.82 -0.19 4.28 16 37 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.09 2.48 6.08 -51.92 -0.32 2.17 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.13 8.08 -51.93 -0.42 0.72 16 47 H 0.12 0.97 8.09 -51.93 -0.42 0.55 16 48 H 0.15 2.49 4.96 -53.41 -0.26 2.22 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 51 H 0.09 1.39 7.82 -51.93 -0.41 0.98 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -32.38 386.49 -9.89 -42.28 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.01 Total: 7.79 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.76 Total: 2.58 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.54 Total: -59.15 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.38 Total: -15.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.38 -9.89 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614711823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.893 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds