Wall clock time and date at job start Fri Apr 10 2020 18:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 O 1.42900 * 109.46799 * 240.00552 * 2 1 3 5 5 C 1.52993 * 109.47390 * 120.00581 * 2 1 3 6 6 N 1.46503 * 109.47468 * 185.00262 * 5 2 1 7 7 C 1.34765 * 120.00105 * 89.99640 * 6 5 2 8 8 O 1.21588 * 119.99856 * 176.84604 * 7 6 5 9 9 N 1.34776 * 120.00484 * 356.84562 * 7 6 5 10 10 C 1.46499 * 120.00392 * 185.11290 * 9 7 6 11 11 C 1.53043 * 109.46082 * 155.00087 * 10 9 7 12 12 C 1.53193 * 109.31336 * 181.38455 * 11 10 9 13 13 N 1.46927 * 108.89278 * 305.29698 * 12 11 10 14 14 C 1.36941 * 120.62775 * 233.67254 * 13 12 11 15 15 H 1.08001 * 119.99528 * 30.93506 * 14 13 12 16 16 C 1.38806 * 119.99942 * 210.93336 * 14 13 12 17 17 N 1.31614 * 120.00159 * 10.20103 * 16 14 13 18 18 Si 1.86804 * 120.00078 * 190.20248 * 16 14 13 19 19 H 1.48505 * 109.47071 * 89.99527 * 18 16 14 20 20 H 1.48493 * 109.47289 * 210.00157 * 18 16 14 21 21 H 1.48502 * 109.47045 * 330.00031 * 18 16 14 22 22 C 1.47197 * 118.55660 * 53.53693 * 13 12 11 23 23 C 1.53043 * 109.46027 * 275.06863 * 10 9 7 24 24 C 1.46502 * 119.99332 * 269.99665 * 6 5 2 25 25 C 1.52999 * 117.49522 * 196.90200 * 24 6 5 26 26 C 1.53006 * 60.00187 * 252.51527 * 25 24 6 27 27 H 1.08996 * 109.47328 * 299.99718 * 1 2 3 28 28 H 1.09002 * 109.47152 * 59.99382 * 1 2 3 29 29 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46978 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47656 * 300.00309 * 3 2 1 32 32 H 1.09004 * 109.46949 * 60.00280 * 3 2 1 33 33 H 0.96703 * 114.00157 * 299.99693 * 4 2 1 34 34 H 1.09005 * 109.47538 * 64.99458 * 5 2 1 35 35 H 1.09008 * 109.47049 * 304.99914 * 5 2 1 36 36 H 0.97004 * 119.99516 * 5.11517 * 9 7 6 37 37 H 1.08998 * 109.44937 * 35.03504 * 10 9 7 38 38 H 1.08999 * 109.49605 * 61.43656 * 11 10 9 39 39 H 1.09003 * 109.49660 * 301.33714 * 11 10 9 40 40 H 1.09001 * 109.58212 * 65.15154 * 12 11 10 41 41 H 1.09003 * 109.58833 * 185.43361 * 12 11 10 42 42 H 0.97007 * 120.00323 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.53290 * 186.67490 * 22 13 12 44 44 H 1.08996 * 109.68134 * 66.37205 * 22 13 12 45 45 H 1.09004 * 109.49417 * 298.56584 * 23 10 9 46 46 H 1.09002 * 109.49650 * 58.63135 * 23 10 9 47 47 H 1.08999 * 115.55349 * 342.61284 * 24 6 5 48 48 H 1.09006 * 117.49985 * 0.02562 * 25 24 6 49 49 H 1.08996 * 117.49967 * 145.02619 * 25 24 6 50 50 H 1.08995 * 117.49503 * 252.51399 * 26 25 24 51 51 H 1.08995 * 117.51677 * 107.47932 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7213 1.2491 6 7 3.5001 -0.6179 1.3109 7 6 4.0757 0.4195 1.9500 8 8 5.2861 0.4755 2.0509 9 7 3.3098 1.3951 2.4774 10 6 3.9369 2.5775 3.0731 11 6 2.9586 3.7533 3.0231 12 6 3.6298 4.9965 3.6152 13 7 4.1169 4.6773 4.9641 14 6 3.7604 5.4515 6.0360 15 1 2.8020 5.9493 6.0474 16 6 4.6307 5.5963 7.1075 17 7 5.8693 5.1615 7.0128 18 14 4.0440 6.4084 8.6842 19 1 3.4882 5.3760 9.5956 20 1 5.1863 7.0891 9.3452 21 1 2.9909 7.4056 8.3652 22 6 4.9926 3.5069 5.1374 23 6 4.3060 2.2803 4.5283 24 6 4.3343 -1.6424 0.6777 25 6 5.8045 -1.7135 1.0954 26 6 5.4265 -1.1691 -0.2836 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.7209 -1.5951 -1.2331 34 1 1.7516 -1.7716 1.2054 35 1 1.6054 -0.2619 2.1369 36 1 2.3433 1.3143 2.4625 37 1 4.8379 2.8308 2.5144 38 1 2.0677 3.5102 3.6023 39 1 2.6780 3.9494 1.9882 40 1 4.4679 5.2943 2.9851 41 1 2.9071 5.8106 3.6707 42 1 6.4777 5.2630 7.7615 43 1 5.1683 3.3373 6.1998 44 1 5.9430 3.6816 4.6332 45 1 3.4024 2.0511 5.0932 46 1 4.9841 1.4277 4.5648 47 1 3.8309 -2.5807 0.4449 48 1 6.1509 -0.9984 1.8416 49 1 6.2686 -2.6988 1.1376 50 1 5.6419 -1.7963 -1.1486 51 1 5.5240 -0.0956 -0.4452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614711823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:15 Heat of formation + Delta-G solvation = -30.587973 kcal Electronic energy + Delta-G solvation = -30131.857988 eV Core-core repulsion = 26260.825616 eV Total energy + Delta-G solvation = -3871.032372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93138 -39.50791 -38.95702 -37.48640 -35.98496 -35.09465 -33.53549 -32.74127 -31.69749 -30.99069 -28.29616 -27.30342 -26.79012 -24.44739 -23.88691 -23.20377 -22.96261 -21.72660 -21.02174 -20.58605 -19.06399 -18.67725 -17.62109 -17.26014 -16.84606 -16.55574 -16.37892 -15.93928 -15.71031 -15.37942 -15.32391 -15.20337 -14.84700 -14.66927 -14.28639 -14.12472 -13.87970 -13.46771 -13.33863 -13.15666 -12.99600 -12.94297 -12.77515 -12.67976 -12.63443 -12.53126 -12.41542 -12.27328 -12.06319 -11.98426 -11.84563 -11.59230 -11.52562 -11.33376 -11.20401 -10.97948 -10.58676 -10.50261 -9.97691 -9.17217 -8.65830 -7.85356 -5.37643 1.48185 1.48858 1.58420 1.59291 2.11864 2.51532 2.85057 3.13633 3.31646 3.39079 3.67192 3.80665 3.84804 3.89551 4.05775 4.07860 4.11308 4.13088 4.24528 4.34096 4.36202 4.48588 4.61346 4.67148 4.69099 4.77089 4.79818 4.84953 4.90352 4.90807 4.99185 5.04829 5.06852 5.08720 5.11971 5.18309 5.30326 5.32546 5.37643 5.43590 5.47774 5.64044 5.67284 5.72621 5.90355 5.95051 6.41358 6.97463 7.05623 7.14897 7.66373 7.84039 8.38835 9.21072 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003216 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.635599 B = 8703.974715 C = 9587.767482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 C -0.143 4.143 4 O -0.567 6.567 5 C 0.081 3.919 6 N -0.592 5.592 7 C 0.700 3.300 8 O -0.619 6.619 9 N -0.726 5.726 10 C 0.184 3.816 11 C -0.120 4.120 12 C 0.142 3.858 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.074 0.926 16 C -0.053 4.053 17 N -0.941 5.941 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.264 1.264 22 C 0.184 3.816 23 C -0.128 4.128 24 C 0.110 3.890 25 C -0.219 4.219 26 C -0.182 4.182 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.388 0.612 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.009 0.991 41 H 0.068 0.932 42 H 0.249 0.751 43 H 0.055 0.945 44 H -0.014 1.014 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.164 0.836 48 H 0.108 0.892 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -16.841 -16.246 27.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.073 3.927 3 C -0.200 4.200 4 O -0.375 6.375 5 C -0.042 4.042 6 N -0.325 5.325 7 C 0.403 3.597 8 O -0.501 6.501 9 N -0.383 5.383 10 C 0.078 3.922 11 C -0.160 4.160 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.248 4.248 17 N -0.587 5.587 18 Si 0.800 3.200 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.188 1.188 22 C 0.058 3.942 23 C -0.169 4.169 24 C 0.006 3.994 25 C -0.256 4.256 26 C -0.221 4.221 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.004 0.996 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.181 0.819 48 H 0.126 0.874 49 H 0.121 0.879 50 H 0.131 0.869 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.439 -16.175 -16.177 26.532 hybrid contribution 0.080 0.202 1.115 1.136 sum -13.360 -15.973 -15.062 25.700 Atomic orbital electron populations 1.22404 0.93080 1.04032 1.03472 1.21639 0.93763 0.92209 0.85040 1.21926 1.00484 0.95038 1.02585 1.86628 1.77588 1.29850 1.43386 1.22607 0.78287 1.04273 0.98992 1.46386 1.06777 1.23333 1.55958 1.16205 0.84889 0.80329 0.78325 1.90728 1.14175 1.78671 1.66527 1.45535 1.09666 1.20128 1.63011 1.20447 0.95689 0.84046 0.91981 1.22140 0.98047 0.94095 1.01695 1.21027 0.96180 0.95706 0.85457 1.44351 1.57201 1.28586 1.03140 1.19585 0.98690 1.24169 0.96693 0.90814 1.25991 0.94860 1.00767 1.03211 1.70172 1.05167 1.51852 1.31485 0.85195 0.77039 0.78276 0.79480 1.21150 1.22472 1.18819 1.20500 0.89950 0.84870 0.98915 1.22304 1.00123 0.97967 0.96476 1.21667 0.86622 0.91984 0.99150 1.23988 0.98269 1.03349 1.00012 1.23046 1.04991 1.00018 0.94052 0.90477 0.92018 0.90043 0.94765 0.92327 0.90164 0.76314 0.86360 0.89105 0.75628 0.93159 0.90523 0.89303 0.97334 0.91310 0.94228 0.92613 0.99618 0.92255 0.93934 0.81859 0.87407 0.87894 0.86877 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.81 71.98 0.63 -0.63 16 2 C 0.12 1.43 1.18 -10.80 -0.01 1.42 16 3 C -0.14 -2.63 7.33 71.98 0.53 -2.10 16 4 O -0.57 -7.88 12.54 -148.98 -1.87 -9.74 16 5 C 0.08 0.98 4.69 86.38 0.41 1.39 16 6 N -0.59 -12.61 2.50 -815.71 -2.04 -14.65 16 7 C 0.70 21.24 6.36 179.06 1.14 22.38 16 8 O -0.62 -24.70 11.87 -3.99 -0.05 -24.75 16 9 N -0.73 -19.72 3.53 -457.69 -1.62 -21.34 16 10 C 0.18 6.40 2.38 45.02 0.11 6.51 16 11 C -0.12 -3.72 5.55 30.67 0.17 -3.55 16 12 C 0.14 5.78 6.50 86.36 0.56 6.35 16 13 N -0.61 -30.99 3.00 -698.39 -2.09 -33.09 16 14 C -0.26 -14.33 9.59 84.03 0.81 -13.53 16 15 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 16 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 17 N -0.94 -57.43 11.01 21.65 0.24 -57.19 16 18 Si 0.97 45.09 29.57 68.60 2.03 47.12 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 C 0.18 9.53 5.27 86.31 0.46 9.98 16 23 C -0.13 -5.31 5.65 30.67 0.17 -5.14 16 24 C 0.11 2.19 6.22 44.99 0.28 2.47 16 25 C -0.22 -5.64 9.64 30.60 0.29 -5.34 16 26 C -0.18 -4.38 9.90 30.60 0.30 -4.08 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.03 0.87 6.20 -2.39 -0.01 0.86 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.28 6.31 -2.39 -0.02 1.27 16 33 H 0.39 1.99 9.05 -74.06 -0.67 1.32 16 34 H 0.12 0.67 8.03 -2.38 -0.02 0.66 16 35 H 0.09 0.99 6.42 -2.38 -0.02 0.97 16 36 H 0.40 8.23 4.66 -92.71 -0.43 7.79 16 37 H 0.05 2.08 7.66 -2.39 -0.02 2.07 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 42 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 43 H 0.06 3.25 6.08 -2.38 -0.01 3.24 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.04 1.84 8.08 -2.39 -0.02 1.83 16 47 H 0.16 1.84 8.09 -2.39 -0.02 1.82 16 48 H 0.11 3.84 4.96 -25.95 -0.13 3.71 16 49 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 51 H 0.05 1.76 7.82 -2.39 -0.02 1.74 16 Total: -1.00 -76.61 386.49 0.59 -76.02 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.29 Total: 24.08 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.28 Total: 13.54 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.51 Total: -126.26 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.92 Total: -34.49 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.61 0.59 -76.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614711823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.433 kcal (2) G-P(sol) polarization free energy of solvation -76.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds