Wall clock time and date at job start Fri Apr 10 2020 18:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47523 * 120.00213 * 2 1 3 5 5 O 1.21281 * 119.99718 * 264.99892 * 4 2 1 6 6 N 1.34770 * 120.00104 * 84.99914 * 4 2 1 7 7 C 1.46500 * 120.00090 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45870 * 204.99554 * 7 6 4 9 9 C 1.53197 * 109.31035 * 178.61223 * 8 7 6 10 10 N 1.46921 * 108.89220 * 54.56963 * 9 8 7 11 11 C 1.36934 * 120.63409 * 126.46494 * 10 9 8 12 12 H 1.08000 * 119.99464 * 331.92132 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92408 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48499 * 109.47320 * 89.99982 * 15 13 11 17 17 H 1.48500 * 109.47299 * 209.99808 * 15 13 11 18 18 H 1.48507 * 109.47261 * 329.99989 * 15 13 11 19 19 C 1.46963 * 118.71124 * 306.63494 * 10 9 8 20 20 C 1.53042 * 109.46253 * 84.93146 * 7 6 4 21 21 N 1.46907 * 109.47267 * 240.00146 * 2 1 3 22 22 C 1.47010 * 110.99960 * 183.63301 * 21 2 1 23 23 C 1.53101 * 109.25268 * 177.60966 * 22 21 2 24 24 O 1.43010 * 109.26319 * 56.84889 * 23 22 21 25 25 C 1.43020 * 113.73674 * 301.33174 * 24 23 22 26 26 C 1.47014 * 110.99571 * 59.99580 * 21 2 1 27 27 H 1.09004 * 109.46652 * 299.99893 * 1 2 3 28 28 H 1.08996 * 109.47380 * 59.99487 * 1 2 3 29 29 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47693 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47327 * 300.00545 * 3 2 1 32 32 H 1.09004 * 109.47064 * 59.99890 * 3 2 1 33 33 H 0.97004 * 119.99852 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46112 * 324.96788 * 7 6 4 35 35 H 1.09005 * 109.49645 * 58.66588 * 8 7 6 36 36 H 1.08998 * 109.50347 * 298.56326 * 8 7 6 37 37 H 1.09000 * 109.58445 * 174.42964 * 9 8 7 38 38 H 1.09004 * 109.58739 * 294.70519 * 9 8 7 39 39 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47297 * 293.57143 * 19 10 9 41 41 H 1.09005 * 109.70555 * 173.29008 * 19 10 9 42 42 H 1.09004 * 109.49452 * 301.34025 * 20 7 6 43 43 H 1.08997 * 109.50129 * 61.39864 * 20 7 6 44 44 H 1.08994 * 109.50884 * 297.54124 * 22 21 2 45 45 H 1.08996 * 109.50698 * 57.67510 * 22 21 2 46 46 H 1.09005 * 109.50304 * 296.91355 * 23 22 21 47 47 H 1.09004 * 109.53898 * 176.80776 * 23 22 21 48 48 H 1.09007 * 109.50269 * 298.73350 * 25 24 23 49 49 H 1.09001 * 109.54090 * 178.62432 * 25 24 23 50 50 H 1.08998 * 109.50784 * 302.33177 * 26 21 2 51 51 H 1.09000 * 109.50984 * 62.41993 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3209 -0.0749 2.2223 6 7 2.1612 -2.0520 1.2286 7 6 2.6491 -2.7427 2.4249 8 6 3.2844 -4.0750 2.0209 9 6 3.8242 -4.7784 3.2702 10 7 2.7393 -4.9010 4.2533 11 6 2.4224 -6.1183 4.7945 12 1 2.6050 -7.0227 4.2332 13 6 1.8663 -6.1898 6.0643 14 7 1.9441 -5.1565 6.8759 15 14 1.0077 -7.7524 6.6212 16 1 1.9924 -8.6533 7.2723 17 1 -0.0651 -7.4097 7.5892 18 1 0.4130 -8.4367 5.4450 19 6 1.9986 -3.6925 4.6417 20 6 1.4792 -3.0015 3.3771 21 7 2.0197 -0.6925 -1.1995 22 6 3.4867 -0.7879 -1.1907 23 6 3.9493 -1.5665 -2.4251 24 8 3.4557 -0.9216 -3.6022 25 6 2.0303 -0.8121 -3.6439 26 6 1.5482 -0.0258 -2.4220 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.9301 -2.5603 0.4354 34 1 3.3931 -2.1222 2.9244 35 1 4.1027 -3.8916 1.3245 36 1 2.5345 -4.7059 1.5437 37 1 4.1886 -5.7702 3.0025 38 1 4.6389 -4.1926 3.6961 39 1 1.5558 -5.2066 7.7634 40 1 2.6626 -3.0169 5.1809 41 1 1.1584 -3.9658 5.2801 42 1 1.0125 -2.0538 3.6459 43 1 0.7459 -3.6419 2.8869 44 1 3.9166 0.2135 -1.2099 45 1 3.8123 -1.3073 -0.2895 46 1 3.5631 -2.5848 -2.3789 47 1 5.0387 -1.5914 -2.4533 48 1 1.5884 -1.8085 -3.6332 49 1 1.7312 -0.2910 -4.5534 50 1 0.4588 0.0110 -2.4195 51 1 1.9466 0.9881 -2.4605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619775802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:20 Heat of formation + Delta-G solvation = -49.863065 kcal Electronic energy + Delta-G solvation = -29958.997201 eV Core-core repulsion = 26087.128998 eV Total energy + Delta-G solvation = -3871.868202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.93753 -39.20356 -37.57214 -36.46914 -34.42419 -32.22571 -32.12793 -31.47236 -30.03390 -29.44816 -27.61747 -26.88875 -25.37178 -24.32227 -23.06923 -22.22131 -21.58740 -20.68021 -19.60911 -18.93452 -17.70952 -16.80315 -16.54228 -16.05604 -15.81283 -15.38600 -15.29104 -14.91090 -14.69149 -14.53644 -14.32825 -14.08471 -13.73199 -13.49231 -13.10340 -13.02749 -12.75904 -12.52206 -12.40936 -12.34852 -12.21021 -12.12941 -11.72851 -11.57253 -11.47268 -11.33236 -11.11858 -10.92516 -10.78477 -10.70956 -10.38352 -10.25012 -10.07153 -10.01211 -9.76572 -9.74024 -9.38512 -8.75419 -8.65422 -8.40662 -6.67256 -5.77948 -3.20902 2.70656 3.31622 3.36080 3.38939 3.44956 3.47033 3.57760 4.42428 4.49997 4.54529 4.60563 4.75619 4.81206 4.87580 4.92300 4.98839 5.17852 5.30203 5.31850 5.33598 5.37918 5.41220 5.44579 5.47605 5.53634 5.55114 5.60364 5.64428 5.67355 5.84389 5.88826 5.98817 6.08859 6.25337 6.38251 6.44005 6.50706 6.55004 6.62107 6.65980 6.78259 6.82325 6.93366 6.97246 7.38411 7.68297 7.79638 7.80127 8.43796 8.46145 9.21658 9.85070 10.41941 11.30718 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002997 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.158433 B = 9341.365309 C = 9881.292156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.089 3.911 3 C -0.167 4.167 4 C 0.524 3.476 5 O -0.540 6.540 6 N -0.713 5.713 7 C 0.149 3.851 8 C -0.137 4.137 9 C 0.149 3.851 10 N -0.592 5.592 11 C -0.255 4.255 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.901 5.901 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.174 3.826 20 C -0.145 4.145 21 N -0.523 5.523 22 C 0.005 3.995 23 C 0.067 3.933 24 O -0.386 6.386 25 C 0.064 3.936 26 C 0.012 3.988 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 10.943 -21.179 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.308 3.692 5 O -0.416 6.416 6 N -0.363 5.363 7 C 0.045 3.955 8 C -0.177 4.177 9 C 0.022 3.978 10 N -0.315 5.315 11 C -0.384 4.384 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.545 5.545 15 Si 0.731 3.269 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.048 3.952 20 C -0.185 4.185 21 N -0.249 5.249 22 C -0.123 4.123 23 C -0.010 4.010 24 O -0.305 6.305 25 C -0.013 4.013 26 C -0.116 4.116 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.117 0.883 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.941 10.969 -20.397 23.178 hybrid contribution -0.470 -0.221 0.262 0.582 sum -1.411 10.747 -20.135 22.867 Atomic orbital electron populations 1.21841 0.91343 1.03482 1.02795 1.21344 0.97253 0.93065 0.88660 1.22247 1.01896 0.95377 1.03033 1.20128 0.77674 0.82856 0.88516 1.90725 1.49789 1.66342 1.34786 1.46364 1.66099 1.06583 1.17225 1.21053 0.96769 0.92721 0.84921 1.22316 0.99759 0.95638 0.99986 1.20829 0.90695 0.97733 0.88574 1.44082 1.34491 1.05240 1.47686 1.19155 1.37738 0.84946 0.96578 0.91701 1.25059 1.01922 0.97308 0.95308 1.70036 1.47051 1.30410 1.07032 0.86313 0.79373 0.82963 0.78205 1.21394 1.21571 1.20491 1.20744 0.96631 0.86479 0.91349 1.22543 0.97130 0.99867 0.99001 1.62461 1.10042 1.51095 1.01339 1.22987 0.87827 1.00922 1.00591 1.22658 0.99397 0.95691 0.83302 1.87987 1.21106 1.80134 1.41249 1.22664 0.81335 1.00123 0.97164 1.22901 1.01604 0.97023 0.90035 0.91169 0.91424 0.91067 0.92101 0.91839 0.90516 0.76254 0.90271 0.92745 0.91846 0.92399 0.96307 0.93596 0.96240 0.89347 0.92981 0.92691 0.93268 0.88875 0.91961 0.88343 0.92112 0.88525 0.89046 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.23 37.16 0.31 -0.97 16 2 C 0.09 0.96 0.64 -132.75 -0.08 0.88 16 3 C -0.17 -1.74 7.31 37.16 0.27 -1.47 16 4 C 0.52 7.64 5.37 -10.99 -0.06 7.58 16 5 O -0.54 -10.11 15.76 5.56 0.09 -10.02 16 6 N -0.71 -10.00 3.97 -53.77 -0.21 -10.21 16 7 C 0.15 2.57 2.42 -67.89 -0.16 2.40 16 8 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 9 C 0.15 3.05 6.51 -3.71 -0.02 3.02 16 10 N -0.59 -14.78 3.00 -172.29 -0.52 -15.30 16 11 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 12 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 14 N -0.90 -26.38 11.20 55.49 0.62 -25.76 16 15 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.17 4.25 5.30 -3.69 -0.02 4.23 16 20 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 21 N -0.52 -4.79 3.83 -220.00 -0.84 -5.63 16 22 C 0.00 0.05 4.86 -3.71 -0.02 0.03 16 23 C 0.07 0.57 7.01 37.21 0.26 0.83 16 24 O -0.39 -3.73 10.83 -35.23 -0.38 -4.11 16 25 C 0.06 0.47 7.01 37.21 0.26 0.73 16 26 C 0.01 0.09 4.87 -3.71 -0.02 0.07 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.48 6.35 -51.93 -0.33 0.15 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.68 6.54 -51.93 -0.34 0.35 16 31 H 0.06 0.53 6.46 -51.93 -0.34 0.20 16 32 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 33 H 0.40 4.91 7.92 -40.82 -0.32 4.59 16 34 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.50 6.52 -51.93 -0.34 0.16 16 45 H 0.09 1.02 6.22 -51.93 -0.32 0.69 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.56 6.19 -51.93 -0.32 0.24 16 51 H 0.05 0.39 6.44 -51.93 -0.33 0.05 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -31.53 380.69 -9.15 -40.68 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.80 Total: 3.22 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 0.18 Total: 4.78 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.95 Total: -56.90 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.29 Total: -14.13 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.53 -9.15 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619775802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.185 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds