Wall clock time and date at job start Fri Apr 10 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.50703 * 109.47523 * 120.00213 * 2 1 3 5 5 O 1.21281 * 119.99718 * 264.99892 * 4 2 1 6 6 N 1.34770 * 120.00104 * 84.99914 * 4 2 1 7 7 C 1.46500 * 120.00090 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45870 * 204.99554 * 7 6 4 9 9 C 1.53197 * 109.31035 * 178.61223 * 8 7 6 10 10 N 1.46921 * 108.89220 * 54.56963 * 9 8 7 11 11 C 1.36934 * 120.63409 * 126.46494 * 10 9 8 12 12 H 1.08000 * 119.99464 * 331.92132 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92408 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17004 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.17171 * 13 11 10 16 16 H 1.48499 * 109.47320 * 89.99982 * 15 13 11 17 17 H 1.48500 * 109.47299 * 209.99808 * 15 13 11 18 18 H 1.48507 * 109.47261 * 329.99989 * 15 13 11 19 19 C 1.46963 * 118.71124 * 306.63494 * 10 9 8 20 20 C 1.53042 * 109.46253 * 84.93146 * 7 6 4 21 21 N 1.46907 * 109.47267 * 240.00146 * 2 1 3 22 22 C 1.47010 * 110.99960 * 183.63301 * 21 2 1 23 23 C 1.53101 * 109.25268 * 177.60966 * 22 21 2 24 24 O 1.43010 * 109.26319 * 56.84889 * 23 22 21 25 25 C 1.43020 * 113.73674 * 301.33174 * 24 23 22 26 26 C 1.47014 * 110.99571 * 59.99580 * 21 2 1 27 27 H 1.09004 * 109.46652 * 299.99893 * 1 2 3 28 28 H 1.08996 * 109.47380 * 59.99487 * 1 2 3 29 29 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47693 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47327 * 300.00545 * 3 2 1 32 32 H 1.09004 * 109.47064 * 59.99890 * 3 2 1 33 33 H 0.97004 * 119.99852 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46112 * 324.96788 * 7 6 4 35 35 H 1.09005 * 109.49645 * 58.66588 * 8 7 6 36 36 H 1.08998 * 109.50347 * 298.56326 * 8 7 6 37 37 H 1.09000 * 109.58445 * 174.42964 * 9 8 7 38 38 H 1.09004 * 109.58739 * 294.70519 * 9 8 7 39 39 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47297 * 293.57143 * 19 10 9 41 41 H 1.09005 * 109.70555 * 173.29008 * 19 10 9 42 42 H 1.09004 * 109.49452 * 301.34025 * 20 7 6 43 43 H 1.08997 * 109.50129 * 61.39864 * 20 7 6 44 44 H 1.08994 * 109.50884 * 297.54124 * 22 21 2 45 45 H 1.08996 * 109.50698 * 57.67510 * 22 21 2 46 46 H 1.09005 * 109.50304 * 296.91355 * 23 22 21 47 47 H 1.09004 * 109.53898 * 176.80776 * 23 22 21 48 48 H 1.09007 * 109.50269 * 298.73350 * 25 24 23 49 49 H 1.09001 * 109.54090 * 178.62432 * 25 24 23 50 50 H 1.08998 * 109.50784 * 302.33177 * 26 21 2 51 51 H 1.09000 * 109.50984 * 62.41993 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3209 -0.0749 2.2223 6 7 2.1612 -2.0520 1.2286 7 6 2.6491 -2.7427 2.4249 8 6 3.2844 -4.0750 2.0209 9 6 3.8242 -4.7784 3.2702 10 7 2.7393 -4.9010 4.2533 11 6 2.4224 -6.1183 4.7945 12 1 2.6050 -7.0227 4.2332 13 6 1.8663 -6.1898 6.0643 14 7 1.9441 -5.1565 6.8759 15 14 1.0077 -7.7524 6.6212 16 1 1.9924 -8.6533 7.2723 17 1 -0.0651 -7.4097 7.5892 18 1 0.4130 -8.4367 5.4450 19 6 1.9986 -3.6925 4.6417 20 6 1.4792 -3.0015 3.3771 21 7 2.0197 -0.6925 -1.1995 22 6 3.4867 -0.7879 -1.1907 23 6 3.9493 -1.5665 -2.4251 24 8 3.4557 -0.9216 -3.6022 25 6 2.0303 -0.8121 -3.6439 26 6 1.5482 -0.0258 -2.4220 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.9301 -2.5603 0.4354 34 1 3.3931 -2.1222 2.9244 35 1 4.1027 -3.8916 1.3245 36 1 2.5345 -4.7059 1.5437 37 1 4.1886 -5.7702 3.0025 38 1 4.6389 -4.1926 3.6961 39 1 1.5558 -5.2066 7.7634 40 1 2.6626 -3.0169 5.1809 41 1 1.1584 -3.9658 5.2801 42 1 1.0125 -2.0538 3.6459 43 1 0.7459 -3.6419 2.8869 44 1 3.9166 0.2135 -1.2099 45 1 3.8123 -1.3073 -0.2895 46 1 3.5631 -2.5848 -2.3789 47 1 5.0387 -1.5914 -2.4533 48 1 1.5884 -1.8085 -3.6332 49 1 1.7312 -0.2910 -4.5534 50 1 0.4588 0.0110 -2.4195 51 1 1.9466 0.9881 -2.4605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619775802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:18 Heat of formation + Delta-G solvation = -72.075069 kcal Electronic energy + Delta-G solvation = -29959.960385 eV Core-core repulsion = 26087.128998 eV Total energy + Delta-G solvation = -3872.831387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90101 -40.20304 -39.04900 -37.42971 -36.04201 -33.88807 -33.00573 -32.20990 -31.72043 -31.16068 -28.41595 -27.64833 -27.02812 -25.31480 -24.22188 -23.90460 -22.96248 -21.61003 -21.09877 -20.07856 -18.89457 -18.47445 -17.43353 -17.08265 -16.82718 -16.71452 -16.16580 -15.95805 -15.81880 -15.60132 -15.37919 -15.35940 -15.21878 -14.97962 -14.75311 -14.37222 -14.09410 -13.69947 -13.53726 -13.22696 -13.16755 -13.06430 -12.98894 -12.83192 -12.67421 -12.55331 -12.46482 -12.30948 -12.13124 -12.08105 -12.02409 -11.85762 -11.54729 -11.42104 -11.39139 -10.78153 -10.60261 -10.57298 -9.96480 -9.49027 -8.71513 -7.87940 -5.34317 1.47328 1.48947 1.55964 1.58835 2.16960 2.51545 2.57119 2.99441 3.28179 3.50062 3.66103 3.82922 3.85132 3.94004 3.97747 4.02877 4.08891 4.14859 4.30365 4.32132 4.36134 4.46196 4.53247 4.62004 4.63260 4.65468 4.69645 4.74808 4.79160 4.83184 4.84842 4.89217 4.92471 5.03040 5.04453 5.06746 5.11899 5.14526 5.22335 5.30762 5.44838 5.55910 5.63428 5.68462 5.73583 5.86164 6.22711 6.38021 6.62697 7.12844 7.28228 7.83734 8.36713 9.19294 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002997 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.158433 B = 9341.365309 C = 9881.292156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.098 3.902 3 C -0.163 4.163 4 C 0.521 3.479 5 O -0.586 6.586 6 N -0.698 5.698 7 C 0.161 3.839 8 C -0.119 4.119 9 C 0.142 3.858 10 N -0.609 5.609 11 C -0.263 4.263 12 H 0.074 0.926 13 C -0.054 4.054 14 N -0.939 5.939 15 Si 0.970 3.030 16 H -0.284 1.284 17 H -0.296 1.296 18 H -0.266 1.266 19 C 0.184 3.816 20 C -0.128 4.128 21 N -0.519 5.519 22 C 0.007 3.993 23 C 0.070 3.930 24 O -0.404 6.404 25 C 0.062 3.938 26 C 0.012 3.988 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.416 0.584 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.010 0.990 39 H 0.249 0.751 40 H -0.013 1.013 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.116 0.884 50 H 0.111 0.889 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 10.350 -24.605 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 C -0.222 4.222 4 C 0.308 3.692 5 O -0.465 6.465 6 N -0.349 5.349 7 C 0.056 3.944 8 C -0.159 4.159 9 C 0.016 3.984 10 N -0.333 5.333 11 C -0.393 4.393 12 H 0.091 0.909 13 C -0.249 4.249 14 N -0.585 5.585 15 Si 0.797 3.203 16 H -0.211 1.211 17 H -0.222 1.222 18 H -0.191 1.191 19 C 0.058 3.942 20 C -0.169 4.169 21 N -0.246 5.246 22 C -0.121 4.121 23 C -0.007 4.007 24 O -0.323 6.323 25 C -0.015 4.015 26 C -0.115 4.115 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.005 0.995 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.083 0.917 49 H 0.134 0.866 50 H 0.129 0.871 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.696 10.361 -23.898 26.103 hybrid contribution -0.172 0.009 1.304 1.315 sum -1.868 10.370 -22.595 24.931 Atomic orbital electron populations 1.21864 0.89827 1.03839 1.03738 1.21235 0.98164 0.92538 0.87491 1.22227 1.01146 0.95327 1.03497 1.20875 0.76430 0.82667 0.89252 1.90711 1.51652 1.67214 1.36952 1.46093 1.65708 1.06611 1.16450 1.20663 0.94958 0.93261 0.85529 1.22111 1.01016 0.94327 0.98414 1.21031 0.89515 0.98780 0.89069 1.44331 1.35947 1.04578 1.48417 1.19563 1.36989 0.86063 0.96642 0.90874 1.25879 1.03052 1.00382 0.95600 1.70211 1.48420 1.32643 1.07193 0.85249 0.77928 0.79310 0.77789 1.21093 1.22202 1.19088 1.20444 0.94794 0.86289 0.92716 1.22282 0.98109 0.98847 0.97621 1.62496 1.09718 1.50974 1.01375 1.22942 0.88129 1.00489 1.00579 1.22672 0.99982 0.95569 0.82489 1.87972 1.22538 1.80278 1.41464 1.22841 0.80197 1.00649 0.97810 1.23019 1.02728 0.96796 0.88978 0.92311 0.88470 0.90998 0.93300 0.89255 0.92095 0.74601 0.92768 0.89099 0.90776 0.91414 0.97185 0.94195 0.99506 0.92729 0.93788 0.92052 0.94126 0.90308 0.91400 0.87555 0.91665 0.86585 0.87108 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.23 71.98 0.59 -1.59 16 2 C 0.10 1.94 0.64 2.78 0.00 1.94 16 3 C -0.16 -3.20 7.31 71.98 0.53 -2.68 16 4 C 0.52 14.89 5.37 87.66 0.47 15.36 16 5 O -0.59 -22.44 15.76 -3.03 -0.05 -22.49 16 6 N -0.70 -18.63 3.97 -442.41 -1.75 -20.38 16 7 C 0.16 5.47 2.42 45.02 0.11 5.58 16 8 C -0.12 -3.66 5.55 30.67 0.17 -3.49 16 9 C 0.14 5.72 6.51 86.37 0.56 6.28 16 10 N -0.61 -30.83 3.00 -699.00 -2.10 -32.93 16 11 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 12 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 13 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 14 N -0.94 -56.99 11.20 21.65 0.24 -56.74 16 15 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.18 9.39 5.30 86.35 0.46 9.84 16 20 C -0.13 -5.21 5.65 30.67 0.17 -5.03 16 21 N -0.52 -8.13 3.83 -849.94 -3.25 -11.39 16 22 C 0.01 0.12 4.86 86.32 0.42 0.54 16 23 C 0.07 1.03 7.01 72.02 0.50 1.54 16 24 O -0.40 -6.69 10.83 -148.98 -1.61 -8.30 16 25 C 0.06 0.69 7.01 72.01 0.50 1.19 16 26 C 0.01 0.14 4.87 86.31 0.42 0.56 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.10 1.00 6.35 -2.39 -0.02 0.99 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.07 6.54 -2.39 -0.02 1.06 16 31 H 0.09 1.27 6.46 -2.39 -0.02 1.26 16 32 H 0.06 1.40 7.87 -2.38 -0.02 1.38 16 33 H 0.42 9.03 7.92 -92.71 -0.73 8.30 16 34 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 35 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.05 3.13 6.07 -2.38 -0.01 3.12 16 42 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.04 0.78 6.52 -2.39 -0.02 0.76 16 45 H 0.08 1.60 6.22 -2.39 -0.01 1.58 16 46 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 48 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.11 0.86 6.19 -2.39 -0.01 0.84 16 51 H 0.05 0.59 6.44 -2.39 -0.02 0.58 16 Total: -1.00 -71.17 380.69 -0.17 -71.35 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.18 Total: 20.06 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.13 Total: 13.81 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.86 Total: -121.44 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.66 Total: -30.79 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.17 -0.17 -71.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619775802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.728 kcal (2) G-P(sol) polarization free energy of solvation -71.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds