Wall clock time and date at job start Fri Apr 10 2020 18:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46907 * 109.47126 * 239.99547 * 2 1 3 5 5 C 1.46897 * 110.99870 * 60.00256 * 4 2 1 6 6 C 1.50700 * 109.47191 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99653 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99779 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47290 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99796 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99963 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99908 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00167 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47175 * 90.00226 * 14 12 10 16 16 H 1.48501 * 109.47680 * 210.00124 * 14 12 10 17 17 H 1.48501 * 109.47340 * 330.00116 * 14 12 10 18 18 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 19 19 O 1.21281 * 119.99699 * 264.99617 * 18 2 1 20 20 N 1.34773 * 120.00080 * 85.00108 * 18 2 1 21 21 C 1.46506 * 119.99969 * 180.02562 * 20 18 2 22 22 C 1.52998 * 109.47237 * 179.72043 * 21 20 18 23 23 C 1.54258 * 110.03455 * 292.90744 * 22 21 20 24 24 C 1.54967 * 104.16246 * 217.13741 * 23 22 21 25 25 C 1.54887 * 102.77367 * 37.88475 * 24 23 22 26 26 C 1.53874 * 110.03277 * 175.68586 * 22 21 20 27 27 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 28 28 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 29 29 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 32 32 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 33 33 H 1.00898 * 110.99637 * 296.04855 * 4 2 1 34 34 H 1.09004 * 109.46874 * 300.00003 * 5 4 2 35 35 H 1.09004 * 109.46805 * 59.99511 * 5 4 2 36 36 H 0.96998 * 120.00976 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.46868 * 300.00415 * 9 8 6 38 38 H 1.09003 * 109.46601 * 59.99786 * 9 8 6 39 39 H 0.97006 * 119.99756 * 179.97438 * 13 12 10 40 40 H 0.97005 * 120.00161 * 359.72088 * 20 18 2 41 41 H 1.09001 * 109.46512 * 299.72412 * 21 20 18 42 42 H 1.08998 * 109.47174 * 59.71534 * 21 20 18 43 43 H 1.09006 * 110.01511 * 54.29951 * 22 21 20 44 44 H 1.09005 * 110.48463 * 335.78619 * 23 22 21 45 45 H 1.09006 * 110.48910 * 98.42335 * 23 22 21 46 46 H 1.09007 * 110.71710 * 279.57479 * 24 23 22 47 47 H 1.09001 * 110.92470 * 156.29521 * 24 23 22 48 48 H 1.09006 * 110.48348 * 203.40513 * 25 24 23 49 49 H 1.08996 * 110.59816 * 80.82043 * 25 24 23 50 50 H 1.09001 * 110.03624 * 238.57082 * 26 22 21 51 51 H 1.09006 * 110.03109 * 359.95719 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.5486 -0.0266 -2.4211 6 6 2.0703 -0.7632 -3.6279 7 8 2.7662 -1.7460 -3.4844 8 7 1.7641 -0.3292 -4.8665 9 6 2.2707 -1.0457 -6.0397 10 6 1.7887 -0.3616 -7.2930 11 1 1.1668 0.5186 -7.2226 12 6 2.1408 -0.8599 -8.5293 13 7 1.7197 -0.2632 -9.6230 14 14 3.2158 -2.3827 -8.6510 15 1 2.3569 -3.5937 -8.6835 16 1 4.0272 -2.3180 -9.8930 17 1 4.1180 -2.4472 -7.4732 18 6 2.0322 -0.7105 1.2305 19 8 2.3207 -0.0749 2.2224 20 7 2.1609 -2.0520 1.2287 21 6 2.6487 -2.7427 2.4252 22 6 2.6937 -4.2492 2.1617 23 6 1.2624 -4.7990 1.9922 24 6 1.3083 -6.1912 2.6713 25 6 2.2243 -5.9451 3.8957 26 6 3.3054 -4.9778 3.3711 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.7501 -1.6649 -1.1908 34 1 0.4587 -0.0267 -2.4378 35 1 1.9121 1.0010 -2.4378 36 1 1.2084 0.4575 -4.9814 37 1 3.3606 -1.0460 -6.0226 38 1 1.9068 -2.0730 -6.0231 39 1 1.9677 -0.6136 -10.4929 40 1 1.9264 -2.5607 0.4368 41 1 3.6498 -2.3861 2.6677 42 1 1.9785 -2.5398 3.2605 43 1 3.2808 -4.4540 1.2664 44 1 0.5434 -4.1527 2.4957 45 1 1.0140 -4.8971 0.9354 46 1 1.7475 -6.9320 2.0029 47 1 0.3131 -6.5021 2.9895 48 1 2.6770 -6.8796 4.2274 49 1 1.6625 -5.4848 4.7085 50 1 4.1888 -5.5368 3.0627 51 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767658445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:26 Heat of formation + Delta-G solvation = -91.697195 kcal Electronic energy + Delta-G solvation = -28005.706971 eV Core-core repulsion = 24132.024705 eV Total energy + Delta-G solvation = -3873.682266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58047 -39.13211 -38.61602 -36.79224 -34.77701 -34.32504 -32.40746 -31.36724 -30.28047 -29.05749 -28.42166 -27.58721 -26.41822 -25.00351 -22.71325 -21.78882 -21.04337 -20.42301 -19.91274 -19.27025 -18.25238 -16.94634 -16.80069 -16.03498 -15.94387 -15.70860 -15.42880 -15.29145 -15.04908 -14.60168 -14.30049 -14.11373 -13.96779 -13.73784 -13.57203 -13.21218 -13.09505 -12.83381 -12.54039 -12.37336 -12.36091 -12.07569 -11.96304 -11.69606 -11.56870 -11.49871 -11.43716 -11.42109 -11.20263 -11.05179 -11.00583 -10.82420 -10.79279 -10.00240 -9.92941 -9.53239 -9.28004 -9.26752 -8.81256 -8.65995 -8.19056 -6.24574 -4.27108 2.43011 2.93669 3.16209 3.24306 3.31028 3.39553 3.54728 4.16119 4.18789 4.22988 4.30100 4.30789 4.45390 4.64717 4.73494 4.84964 5.00657 5.07047 5.09846 5.10457 5.16188 5.17651 5.23211 5.30215 5.32594 5.37254 5.42284 5.43853 5.53318 5.54778 5.61424 5.63967 5.67384 5.72172 5.79535 5.83951 5.95089 5.99945 6.08709 6.23625 6.55336 6.78565 7.00173 7.03719 7.17697 7.31076 7.35560 8.02348 8.09570 8.46941 8.71578 8.88250 9.35400 10.87298 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002513 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.213994 B =11140.016893 C =12755.029152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 C -0.129 4.129 4 N -0.655 5.655 5 C 0.034 3.966 6 C 0.499 3.501 7 O -0.546 6.546 8 N -0.706 5.706 9 C 0.222 3.778 10 C -0.544 4.544 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.892 5.892 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.260 1.260 18 C 0.536 3.464 19 O -0.540 6.540 20 N -0.723 5.723 21 C 0.127 3.873 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.346 0.654 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.396 0.604 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -5.952 26.120 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.000 4.000 3 C -0.187 4.187 4 N -0.290 5.290 5 C -0.098 4.098 6 C 0.283 3.717 7 O -0.425 6.425 8 N -0.355 5.355 9 C 0.100 3.900 10 C -0.582 4.582 11 H 0.098 0.902 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.704 3.296 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.185 1.185 18 C 0.321 3.679 19 O -0.416 6.416 20 N -0.376 5.376 21 C 0.004 3.996 22 C -0.126 4.126 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.155 4.155 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.821 -5.897 26.722 27.425 hybrid contribution -0.797 -0.908 -0.823 1.462 sum -2.618 -6.806 25.898 26.905 Atomic orbital electron populations 1.22530 0.94655 1.02928 1.03950 1.21192 0.93949 0.96332 0.88494 1.21734 1.02598 0.91936 1.02449 1.60373 1.63053 1.06100 0.99480 1.21976 0.98928 1.00054 0.88858 1.20346 0.81448 0.85302 0.84574 1.90656 1.38349 1.27127 1.86326 1.46159 1.52097 1.31519 1.05738 1.19482 0.95019 0.92584 0.82950 1.21087 1.33939 1.14455 0.88751 0.90249 1.24802 0.95404 0.97071 0.95387 1.69881 1.44834 1.40339 0.97847 0.86810 0.81279 0.83271 0.78285 1.19889 1.20891 1.18473 1.20291 0.76788 0.81986 0.88847 1.90692 1.49805 1.66101 1.34976 1.46028 1.67462 1.07151 1.16912 1.21509 0.99873 0.90715 0.87526 1.22061 0.97369 0.93476 0.99702 1.22500 0.96002 0.96566 1.00980 1.22505 0.99673 0.97076 0.97042 1.22360 0.96934 0.99137 0.97828 1.22119 0.98398 0.98146 0.96860 0.91051 0.90539 0.92078 0.91240 0.91534 0.91039 0.83347 0.91797 0.87588 0.77031 0.95669 0.96230 0.92239 0.76360 0.91457 0.91497 0.89926 0.91349 0.91397 0.91379 0.91604 0.91683 0.91650 0.91352 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.21 37.15 0.31 -1.21 16 2 C 0.09 0.99 0.91 -132.75 -0.12 0.87 16 3 C -0.13 -1.36 7.77 37.15 0.29 -1.07 16 4 N -0.66 -7.76 5.62 -102.39 -0.58 -8.34 16 5 C 0.03 0.41 5.38 -4.98 -0.03 0.38 16 6 C 0.50 8.78 7.87 -10.99 -0.09 8.69 16 7 O -0.55 -11.65 16.20 5.56 0.09 -11.56 16 8 N -0.71 -13.48 5.55 -61.47 -0.34 -13.82 16 9 C 0.22 5.30 4.50 -5.19 -0.02 5.28 16 10 C -0.54 -14.62 9.83 -34.44 -0.34 -14.95 16 11 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 14 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 18 C 0.54 6.41 6.71 -10.98 -0.07 6.33 16 19 O -0.54 -8.13 16.10 5.56 0.09 -8.04 16 20 N -0.72 -7.04 5.29 -60.29 -0.32 -7.36 16 21 C 0.13 1.13 4.73 -4.04 -0.02 1.11 16 22 C -0.11 -0.77 2.97 -89.51 -0.27 -1.03 16 23 C -0.12 -0.82 6.05 -25.03 -0.15 -0.97 16 24 C -0.13 -0.77 6.91 -24.70 -0.17 -0.94 16 25 C -0.13 -0.74 6.83 -25.07 -0.17 -0.91 16 26 C -0.12 -0.75 6.46 -25.61 -0.17 -0.91 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.58 6.40 -51.93 -0.33 0.25 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.59 6.40 -51.93 -0.33 0.26 16 32 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 33 H 0.35 3.97 6.74 -39.29 -0.26 3.70 16 34 H 0.06 0.63 6.30 -51.93 -0.33 0.31 16 35 H 0.11 1.16 6.30 -51.93 -0.33 0.83 16 36 H 0.40 6.57 8.32 -40.82 -0.34 6.23 16 37 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.40 3.45 6.62 -40.82 -0.27 3.18 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.47 7.77 -51.93 -0.40 0.07 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -33.20 400.44 -8.85 -42.05 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.82 Total: 7.22 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.12 Total: 2.71 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.46 Total: -54.89 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.18 Total: -19.60 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.20 -8.85 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767658445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.650 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds