Wall clock time and date at job start Fri Apr 10 2020 18:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 N 1.46907 * 109.47126 * 239.99547 * 2 1 3 5 5 C 1.46897 * 110.99870 * 60.00256 * 4 2 1 6 6 C 1.50700 * 109.47191 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99653 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99779 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47290 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99796 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99963 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99908 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00167 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47175 * 90.00226 * 14 12 10 16 16 H 1.48501 * 109.47680 * 210.00124 * 14 12 10 17 17 H 1.48501 * 109.47340 * 330.00116 * 14 12 10 18 18 C 1.50706 * 109.46894 * 120.00068 * 2 1 3 19 19 O 1.21281 * 119.99699 * 264.99617 * 18 2 1 20 20 N 1.34773 * 120.00080 * 85.00108 * 18 2 1 21 21 C 1.46506 * 119.99969 * 180.02562 * 20 18 2 22 22 C 1.52998 * 109.47237 * 179.72043 * 21 20 18 23 23 C 1.54258 * 110.03455 * 292.90744 * 22 21 20 24 24 C 1.54967 * 104.16246 * 217.13741 * 23 22 21 25 25 C 1.54887 * 102.77367 * 37.88475 * 24 23 22 26 26 C 1.53874 * 110.03277 * 175.68586 * 22 21 20 27 27 H 1.09000 * 109.47196 * 300.00422 * 1 2 3 28 28 H 1.09002 * 109.46922 * 60.00081 * 1 2 3 29 29 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47305 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47025 * 299.99856 * 3 2 1 32 32 H 1.09000 * 109.47299 * 59.99641 * 3 2 1 33 33 H 1.00898 * 110.99637 * 296.04855 * 4 2 1 34 34 H 1.09004 * 109.46874 * 300.00003 * 5 4 2 35 35 H 1.09004 * 109.46805 * 59.99511 * 5 4 2 36 36 H 0.96998 * 120.00976 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.46868 * 300.00415 * 9 8 6 38 38 H 1.09003 * 109.46601 * 59.99786 * 9 8 6 39 39 H 0.97006 * 119.99756 * 179.97438 * 13 12 10 40 40 H 0.97005 * 120.00161 * 359.72088 * 20 18 2 41 41 H 1.09001 * 109.46512 * 299.72412 * 21 20 18 42 42 H 1.08998 * 109.47174 * 59.71534 * 21 20 18 43 43 H 1.09006 * 110.01511 * 54.29951 * 22 21 20 44 44 H 1.09005 * 110.48463 * 335.78619 * 23 22 21 45 45 H 1.09006 * 110.48910 * 98.42335 * 23 22 21 46 46 H 1.09007 * 110.71710 * 279.57479 * 24 23 22 47 47 H 1.09001 * 110.92470 * 156.29521 * 24 23 22 48 48 H 1.09006 * 110.48348 * 203.40513 * 25 24 23 49 49 H 1.08996 * 110.59816 * 80.82043 * 25 24 23 50 50 H 1.09001 * 110.03624 * 238.57082 * 26 22 21 51 51 H 1.09006 * 110.03109 * 359.95719 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 1.5486 -0.0266 -2.4211 6 6 2.0703 -0.7632 -3.6279 7 8 2.7662 -1.7460 -3.4844 8 7 1.7641 -0.3292 -4.8665 9 6 2.2707 -1.0457 -6.0397 10 6 1.7887 -0.3616 -7.2930 11 1 1.1668 0.5186 -7.2226 12 6 2.1408 -0.8599 -8.5293 13 7 1.7197 -0.2632 -9.6230 14 14 3.2158 -2.3827 -8.6510 15 1 2.3569 -3.5937 -8.6835 16 1 4.0272 -2.3180 -9.8930 17 1 4.1180 -2.4472 -7.4732 18 6 2.0322 -0.7105 1.2305 19 8 2.3207 -0.0749 2.2224 20 7 2.1609 -2.0520 1.2287 21 6 2.6487 -2.7427 2.4252 22 6 2.6937 -4.2492 2.1617 23 6 1.2624 -4.7990 1.9922 24 6 1.3083 -6.1912 2.6713 25 6 2.2243 -5.9451 3.8957 26 6 3.3054 -4.9778 3.3711 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.7501 -1.6649 -1.1908 34 1 0.4587 -0.0267 -2.4378 35 1 1.9121 1.0010 -2.4378 36 1 1.2084 0.4575 -4.9814 37 1 3.3606 -1.0460 -6.0226 38 1 1.9068 -2.0730 -6.0231 39 1 1.9677 -0.6136 -10.4929 40 1 1.9264 -2.5607 0.4368 41 1 3.6498 -2.3861 2.6677 42 1 1.9785 -2.5398 3.2605 43 1 3.2808 -4.4540 1.2664 44 1 0.5434 -4.1527 2.4957 45 1 1.0140 -4.8971 0.9354 46 1 1.7475 -6.9320 2.0029 47 1 0.3131 -6.5021 2.9895 48 1 2.6770 -6.8796 4.2274 49 1 1.6625 -5.4848 4.7085 50 1 4.1888 -5.5368 3.0627 51 1 3.5709 -4.2580 4.1455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767658445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:25 Heat of formation + Delta-G solvation = -116.595447 kcal Electronic energy + Delta-G solvation = -28006.786641 eV Core-core repulsion = 24132.024705 eV Total energy + Delta-G solvation = -3874.761936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49783 -40.44935 -39.30533 -37.79555 -36.08795 -35.58605 -34.37930 -32.38567 -30.93483 -30.14128 -29.57250 -28.32471 -27.52102 -25.86860 -24.07276 -23.14504 -21.60666 -21.45509 -20.99708 -20.05461 -19.48814 -18.58445 -17.60443 -17.31946 -17.09439 -16.74519 -16.60538 -16.27045 -16.00873 -15.70156 -15.44842 -15.33413 -14.96252 -14.68048 -14.55447 -14.33783 -14.19613 -14.00023 -13.87945 -13.63513 -13.25531 -13.08195 -13.05055 -12.79168 -12.70213 -12.47720 -12.26016 -12.22480 -12.00664 -11.93006 -11.92698 -11.80102 -11.63411 -11.52768 -11.36876 -10.90810 -10.89405 -10.71289 -10.13154 -9.89714 -9.53418 -8.38499 -6.45131 1.33579 1.36586 1.48623 1.50214 1.77665 2.13469 2.28750 2.33045 2.97176 3.11692 3.56426 3.61504 3.68761 3.76377 3.82814 3.94988 4.03439 4.30195 4.30547 4.37346 4.42980 4.47806 4.55863 4.62250 4.67855 4.68264 4.78909 4.80218 4.83910 4.84957 4.89308 4.92308 5.03091 5.06285 5.07524 5.12358 5.24232 5.25409 5.28741 5.30346 5.37933 5.45666 5.50549 5.55501 5.69521 6.10108 6.12722 6.47544 6.56729 6.89891 7.14193 7.17998 7.46264 8.76084 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.002513 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.213994 B =11140.016893 C =12755.029152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 C -0.130 4.130 4 N -0.669 5.669 5 C 0.047 3.953 6 C 0.499 3.501 7 O -0.585 6.585 8 N -0.706 5.706 9 C 0.233 3.767 10 C -0.545 4.545 11 H 0.061 0.939 12 C 0.025 3.975 13 N -0.932 5.932 14 Si 0.937 3.063 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.261 1.261 18 C 0.530 3.470 19 O -0.576 6.576 20 N -0.714 5.714 21 C 0.129 3.871 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.118 4.118 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.348 0.652 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.409 0.591 37 H 0.009 0.991 38 H 0.013 0.987 39 H 0.272 0.728 40 H 0.408 0.592 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -6.662 27.032 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 C -0.188 4.188 4 N -0.304 5.304 5 C -0.084 4.084 6 C 0.286 3.714 7 O -0.465 6.465 8 N -0.357 5.357 9 C 0.109 3.891 10 C -0.583 4.583 11 H 0.079 0.921 12 C -0.175 4.175 13 N -0.571 5.571 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.185 1.185 18 C 0.316 3.684 19 O -0.455 6.455 20 N -0.366 5.366 21 C 0.006 3.994 22 C -0.120 4.120 23 C -0.159 4.159 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.156 4.156 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.245 0.755 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.244 0.756 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.527 -6.610 27.646 28.537 hybrid contribution -0.593 -0.651 -1.055 1.374 sum -3.120 -7.261 26.591 27.740 Atomic orbital electron populations 1.22515 0.92575 1.03824 1.04771 1.21147 0.95402 0.95739 0.87005 1.21749 1.01401 0.92220 1.03392 1.60315 1.63911 1.06409 0.99746 1.21923 1.00623 0.99680 0.86167 1.21227 0.80243 0.84766 0.85161 1.90641 1.39977 1.29016 1.86863 1.45992 1.52571 1.31879 1.05241 1.19056 0.93960 0.92383 0.83677 1.21314 1.33092 1.13822 0.90063 0.92129 1.25607 0.96758 0.99960 0.95223 1.69985 1.46463 1.42106 0.98503 0.85860 0.79712 0.80013 0.78305 1.18902 1.20129 1.18500 1.20641 0.76366 0.82462 0.88947 1.90674 1.51589 1.66901 1.36366 1.46030 1.66441 1.06744 1.17363 1.21527 0.98971 0.91738 0.87203 1.22006 0.97893 0.92207 0.99859 1.22485 0.95387 0.96883 1.01141 1.22514 1.00084 0.96634 0.97043 1.22363 0.96695 0.99284 0.97773 1.22134 0.98701 0.98248 0.96517 0.90897 0.89031 0.91202 0.93160 0.89573 0.91109 0.83143 0.88432 0.85772 0.75496 0.97273 0.96949 0.91930 0.75567 0.92768 0.91737 0.90414 0.91494 0.91264 0.91409 0.91008 0.90983 0.91469 0.91097 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.21 71.98 0.59 -1.85 16 2 C 0.10 1.91 0.91 2.78 0.00 1.91 16 3 C -0.13 -2.49 7.77 71.98 0.56 -1.93 16 4 N -0.67 -14.37 5.62 -477.87 -2.69 -17.06 16 5 C 0.05 1.01 5.38 85.56 0.46 1.47 16 6 C 0.50 16.60 7.87 87.66 0.69 17.29 16 7 O -0.58 -24.26 16.20 -3.03 -0.05 -24.30 16 8 N -0.71 -25.94 5.55 -466.78 -2.59 -28.53 16 9 C 0.23 10.99 4.50 85.63 0.38 11.37 16 10 C -0.54 -29.23 9.83 25.60 0.25 -28.98 16 11 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 12 C 0.02 1.37 5.47 84.65 0.46 1.84 16 13 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 14 Si 0.94 43.34 27.47 68.60 1.88 45.22 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.26 -11.98 6.54 99.48 0.65 -11.32 16 18 C 0.53 12.24 6.71 87.66 0.59 12.83 16 19 O -0.58 -17.30 16.10 -3.03 -0.05 -17.35 16 20 N -0.71 -13.37 5.29 -463.05 -2.45 -15.82 16 21 C 0.13 2.25 4.73 86.38 0.41 2.66 16 22 C -0.10 -1.37 2.97 -10.07 -0.03 -1.40 16 23 C -0.12 -1.47 6.05 31.69 0.19 -1.28 16 24 C -0.13 -1.37 6.91 31.91 0.22 -1.14 16 25 C -0.12 -1.30 6.83 31.67 0.22 -1.08 16 26 C -0.12 -1.41 6.46 31.32 0.20 -1.20 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.00 6.40 -2.39 -0.02 0.98 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.27 6.40 -2.39 -0.02 1.26 16 32 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 33 H 0.35 7.26 6.74 -89.70 -0.60 6.66 16 34 H 0.10 1.49 6.30 -2.38 -0.02 1.48 16 35 H 0.12 2.26 6.30 -2.38 -0.02 2.25 16 36 H 0.41 12.84 8.32 -92.71 -0.77 12.06 16 37 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 38 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 39 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 40 H 0.41 6.54 6.62 -92.70 -0.61 5.93 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.17 8.02 -2.39 -0.02 1.15 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 44 H 0.07 0.84 7.77 -2.38 -0.02 0.82 16 45 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.07 0.81 7.67 -2.38 -0.02 0.79 16 Total: -1.00 -71.58 400.44 -1.54 -73.12 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -1.10 Total: 28.79 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 5.20 Total: 10.49 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -7.43 Total: -115.97 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -71.58 -1.54 -73.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767658445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.472 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds