Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.50682 * 2 1 4 4 C 1.53096 * 109.51111 * 120.08801 * 2 1 3 5 5 O 1.43017 * 109.29356 * 176.75945 * 4 2 1 6 6 C 1.43011 * 113.73775 * 301.39980 * 5 4 2 7 7 C 1.53099 * 109.29418 * 58.60466 * 6 5 4 8 8 N 1.47014 * 109.50436 * 239.87149 * 2 1 3 9 9 C 1.46904 * 111.00277 * 57.67075 * 8 2 1 10 10 C 1.53118 * 109.52362 * 188.46110 * 9 8 2 11 11 C 1.53049 * 109.27214 * 182.50226 * 10 9 8 12 12 N 1.46845 * 109.57248 * 59.08607 * 11 10 9 13 13 C 1.46906 * 110.99501 * 174.19203 * 12 11 10 14 14 C 1.50697 * 109.46704 * 190.01708 * 13 12 11 15 15 O 1.21277 * 120.00638 * 6.24934 * 14 13 12 16 16 N 1.34777 * 119.99733 * 186.25402 * 14 13 12 17 17 C 1.46506 * 120.00198 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47019 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00252 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99592 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99709 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00028 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46687 * 90.00025 * 22 20 18 24 24 H 1.48495 * 109.47121 * 209.99782 * 22 20 18 25 25 H 1.48500 * 109.47374 * 330.00242 * 22 20 18 26 26 C 1.46846 * 111.19770 * 298.28455 * 12 11 10 27 27 C 1.53034 * 109.52340 * 61.74847 * 26 12 11 28 28 H 1.09006 * 109.46832 * 292.68160 * 1 2 3 29 29 H 1.08998 * 109.47641 * 52.68731 * 1 2 3 30 30 H 1.08998 * 109.47214 * 172.68797 * 1 2 3 31 31 H 1.09006 * 109.50511 * 296.71464 * 4 2 1 32 32 H 1.08998 * 109.50779 * 56.80387 * 4 2 1 33 33 H 1.08998 * 109.47187 * 298.66457 * 6 5 4 34 34 H 1.09009 * 109.54236 * 178.57609 * 6 5 4 35 35 H 1.09007 * 109.50508 * 183.24186 * 7 6 5 36 36 H 1.08992 * 109.51136 * 63.10546 * 7 6 5 37 37 H 1.09003 * 109.52030 * 308.58984 * 9 8 2 38 38 H 1.08996 * 109.50030 * 302.37787 * 10 9 8 39 39 H 1.09000 * 109.50383 * 62.49890 * 10 9 8 40 40 H 1.08998 * 109.40842 * 299.06709 * 11 10 9 41 41 H 1.08996 * 109.45765 * 179.13297 * 11 10 9 42 42 H 1.08994 * 109.47100 * 310.01655 * 13 12 11 43 43 H 1.09000 * 109.47000 * 70.01913 * 13 12 11 44 44 H 0.97005 * 120.00345 * 0.02562 * 16 14 13 45 45 H 1.08998 * 109.47248 * 300.00269 * 17 16 14 46 46 H 1.09000 * 109.46782 * 60.00317 * 17 16 14 47 47 H 0.97000 * 120.00124 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.46417 * 301.72971 * 26 12 11 49 49 H 1.09006 * 109.46332 * 181.76175 * 26 12 11 50 50 H 1.08999 * 109.50416 * 180.87591 * 27 26 12 51 51 H 1.08995 * 109.53612 * 60.77551 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2486 5 8 3.4694 -0.7871 1.2063 6 6 3.9818 -1.4578 0.0518 7 6 3.4902 -0.7417 -1.2090 8 7 2.0208 -0.6956 -1.1986 9 6 1.5053 -0.0653 -2.4213 10 6 1.8594 -0.9326 -3.6324 11 6 1.3747 -0.2404 -4.9085 12 7 2.0098 1.0785 -5.0242 13 6 1.6740 1.7138 -6.3056 14 6 2.5285 2.9402 -6.4973 15 8 3.4141 3.1918 -5.7079 16 7 2.3084 3.7575 -7.5461 17 6 3.1387 4.9502 -7.7323 18 6 2.6910 5.6859 -8.9689 19 1 1.8699 5.3036 -9.5571 20 6 3.3298 6.8471 -9.3494 21 7 2.9388 7.4894 -10.4283 22 14 4.7505 7.5078 -8.3324 23 1 6.0260 6.9358 -8.8335 24 1 4.7936 8.9879 -8.4451 25 1 4.5613 7.1250 -6.9101 26 6 1.6446 1.9446 -3.8959 27 6 2.1388 1.3185 -2.5899 28 1 -0.3633 0.3963 0.9483 29 1 -0.3634 0.6229 -0.8173 30 1 -0.3633 -1.0193 -0.1308 31 1 1.7274 -0.1786 2.1391 32 1 1.6326 -1.7335 1.2770 33 1 3.6302 -2.4894 0.0449 34 1 5.0715 -1.4447 0.0762 35 1 3.8311 -1.2832 -2.0915 36 1 3.8861 0.2736 -1.2287 37 1 0.4223 0.0361 -2.3500 38 1 2.9400 -1.0669 -3.6803 39 1 1.3751 -1.9046 -3.5381 40 1 0.2922 -0.1199 -4.8664 41 1 1.6389 -0.8480 -5.7739 42 1 1.8586 1.0116 -7.1186 43 1 0.6223 2.0002 -6.3046 44 1 1.5998 3.5566 -8.1774 45 1 3.0379 5.6022 -6.8646 46 1 4.1814 4.6530 -7.8443 47 1 3.3879 8.3065 -10.6958 48 1 0.5609 2.0549 -3.8586 49 1 2.1050 2.9241 -4.0261 50 1 1.8540 1.9538 -1.7512 51 1 3.2239 1.2206 -2.6203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846913528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -66.852089 kcal Electronic energy + Delta-G solvation = -28800.488500 eV Core-core repulsion = 24927.883598 eV Total energy + Delta-G solvation = -3872.604902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.68168 -39.37697 -38.11386 -36.10205 -34.26610 -33.32688 -32.38982 -31.86032 -30.95783 -28.90938 -27.96235 -27.00735 -25.74519 -23.52303 -23.04015 -22.78855 -21.75847 -20.59203 -19.83749 -19.17530 -17.27641 -16.95699 -16.70435 -16.10247 -15.98026 -15.71048 -15.45995 -15.11849 -14.93358 -14.65716 -14.51751 -14.47821 -14.10465 -13.71609 -13.66457 -13.28649 -12.82156 -12.68345 -12.57665 -12.52791 -12.33481 -12.32036 -11.98499 -11.76783 -11.69734 -11.56922 -11.41727 -11.07103 -11.02141 -10.83323 -10.70972 -10.62804 -10.43333 -9.98561 -9.87879 -9.51174 -9.18031 -8.79074 -8.53405 -8.30396 -8.11914 -6.23081 -4.25301 3.23001 3.26655 3.32279 3.39740 3.40843 3.55735 3.59441 4.20720 4.32245 4.39032 4.51726 4.57845 4.72426 4.81476 4.82175 4.93116 4.97937 5.05778 5.10472 5.12332 5.15191 5.20507 5.29115 5.31646 5.33289 5.38029 5.40330 5.46329 5.47795 5.52579 5.59172 5.62262 5.69176 5.74626 5.81408 5.86191 5.99242 6.08507 6.20220 6.68605 6.74045 6.77547 6.84371 6.97295 7.05813 7.08154 7.23420 7.38530 8.13543 8.51224 8.74285 8.95454 9.37264 10.88860 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002342 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.404398 B =11952.869657 C =12462.508940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 H 0.053 0.947 4 C 0.070 3.930 5 O -0.387 6.387 6 C 0.064 3.936 7 C 0.010 3.990 8 N -0.524 5.524 9 C 0.080 3.920 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.518 5.518 13 C 0.037 3.963 14 C 0.499 3.501 15 O -0.540 6.540 16 N -0.709 5.709 17 C 0.222 3.778 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.261 1.261 26 C 0.059 3.941 27 C -0.145 4.145 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.395 0.605 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.268 0.732 48 H 0.026 0.974 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 -20.398 19.907 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 H 0.071 0.929 4 C -0.007 4.007 5 O -0.305 6.305 6 C -0.013 4.013 7 C -0.117 4.117 8 N -0.249 5.249 9 C -0.028 4.028 10 C -0.143 4.143 11 C -0.071 4.071 12 N -0.243 5.243 13 C -0.095 4.095 14 C 0.284 3.716 15 O -0.418 6.418 16 N -0.358 5.358 17 C 0.100 3.900 18 C -0.582 4.582 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.185 1.185 26 C -0.070 4.070 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.229 0.771 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.077 0.923 48 H 0.044 0.956 49 H 0.111 0.889 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.787 -20.514 20.541 29.423 hybrid contribution -0.390 1.310 -0.389 1.421 sum -5.177 -19.205 20.152 28.315 Atomic orbital electron populations 1.21812 0.93618 1.02794 1.02059 1.22309 0.96267 0.96979 0.91243 0.92887 1.22701 0.80976 1.00204 0.96834 1.87988 1.20651 1.78577 1.43289 1.22688 0.98958 0.95512 0.84163 1.22887 0.88360 1.01001 0.99497 1.62526 1.08360 1.52372 1.01603 1.21887 0.99513 0.92260 0.89156 1.21606 1.02399 0.98050 0.92238 1.22097 0.96107 0.90375 0.98546 1.61547 1.59146 1.02665 1.00977 1.21980 0.97779 0.96227 0.93479 1.20369 0.85060 0.84253 0.81951 1.90635 1.32968 1.73939 1.44253 1.46193 1.36750 1.26161 1.26706 1.19459 0.90709 0.82518 0.97293 1.21098 1.19456 1.08825 1.08773 0.90278 1.24805 0.96978 0.96076 0.94810 1.69879 1.41434 1.17766 1.23894 0.86807 0.82844 0.78284 0.81689 1.19824 1.20917 1.18547 1.22108 0.97229 0.98014 0.89612 1.22205 1.02433 0.96783 0.96953 0.91923 0.92149 0.91524 0.88714 0.92391 0.92455 0.88519 0.89109 0.93075 0.89792 0.90845 0.90819 0.94956 0.90354 0.88029 0.92432 0.77134 0.95864 0.96198 0.92257 0.95617 0.88875 0.91910 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.67 37.15 0.32 -0.67 16 2 C 0.04 0.34 2.31 -67.60 -0.16 0.19 16 3 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 4 C 0.07 0.57 6.29 37.21 0.23 0.80 16 5 O -0.39 -3.96 10.83 -35.23 -0.38 -4.34 16 6 C 0.06 0.54 7.01 37.21 0.26 0.80 16 7 C 0.01 0.10 4.82 -3.71 -0.02 0.08 16 8 N -0.52 -4.70 4.50 -218.26 -0.98 -5.68 16 9 C 0.08 0.75 2.02 -67.59 -0.14 0.61 16 10 C -0.10 -0.96 5.34 -26.64 -0.14 -1.10 16 11 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 12 N -0.52 -6.81 4.36 -236.11 -1.03 -7.84 16 13 C 0.04 0.49 5.45 -4.97 -0.03 0.46 16 14 C 0.50 9.32 7.36 -10.99 -0.08 9.24 16 15 O -0.54 -12.10 14.66 5.56 0.08 -12.02 16 16 N -0.71 -14.13 5.55 -61.47 -0.34 -14.47 16 17 C 0.22 5.46 4.50 -5.19 -0.02 5.43 16 18 C -0.54 -14.87 9.83 -34.44 -0.34 -15.20 16 19 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 20 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 21 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 22 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 26 C 0.06 0.78 5.11 -3.84 -0.02 0.76 16 27 C -0.14 -1.66 4.66 -26.65 -0.12 -1.78 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 6.62 -51.93 -0.34 0.09 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.09 0.79 6.29 -51.93 -0.33 0.46 16 36 H 0.05 0.55 6.33 -51.93 -0.33 0.22 16 37 H 0.08 0.77 5.99 -51.93 -0.31 0.46 16 38 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 42 H 0.10 1.17 7.99 -51.93 -0.41 0.75 16 43 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 44 H 0.40 6.88 8.32 -40.82 -0.34 6.54 16 45 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 1.55 6.00 -51.93 -0.31 1.24 16 50 H 0.06 0.70 6.82 -51.93 -0.35 0.35 16 51 H 0.08 1.03 6.26 -51.93 -0.32 0.70 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -32.31 380.41 -9.91 -42.21 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.72 Total: 3.01 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.37 Total: 2.24 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -1.58 Total: -53.68 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.30 Total: -16.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.31 -9.91 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846913528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.640 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds