Wall clock time and date at job start Fri Apr 10 2020 18:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.50700 * 109.46986 * 240.00280 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99946 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99763 * 4 2 1 7 7 N 1.31514 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46717 * 59.99948 * 8 6 4 10 10 H 1.48497 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46828 * 299.99949 * 8 6 4 12 12 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 13 13 N 1.46499 * 109.47267 * 300.00079 * 12 2 1 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 2 15 15 O 1.21341 * 119.99750 * 359.72803 * 14 13 12 16 16 C 1.49449 * 119.99546 * 179.97438 * 14 13 12 17 17 O 1.21346 * 120.00675 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99546 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99971 * 180.02562 * 18 16 14 20 20 C 1.52992 * 109.47267 * 179.97438 * 19 18 16 21 21 H 1.09001 * 108.76466 * 66.63719 * 20 19 18 22 22 C 1.45857 * 108.79697 * 184.99919 * 20 19 18 23 23 C 1.54510 * 111.60266 * 182.21074 * 22 20 19 24 24 C 1.50467 * 108.84281 * 282.79723 * 23 22 20 25 25 C 1.54291 * 113.03106 * 92.15807 * 24 23 22 26 26 C 1.54071 * 112.28706 * 318.29892 * 25 24 23 27 27 N 1.44265 * 111.98844 * 318.91648 * 26 25 24 28 28 H 1.08996 * 109.47248 * 299.99428 * 1 2 3 29 29 H 1.08996 * 109.47200 * 60.00228 * 1 2 3 30 30 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47244 * 300.00375 * 3 2 1 33 33 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 34 34 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47330 * 179.97438 * 12 2 1 36 36 H 1.09005 * 109.47124 * 60.00187 * 12 2 1 37 37 H 0.96999 * 119.99984 * 359.97438 * 13 12 2 38 38 H 0.96999 * 120.00044 * 0.02562 * 18 16 14 39 39 H 1.09005 * 109.47136 * 300.00073 * 19 18 16 40 40 H 1.09004 * 109.47024 * 59.99690 * 19 18 16 41 41 H 1.09008 * 109.05669 * 302.75488 * 22 20 19 42 42 H 1.09000 * 109.05936 * 61.66344 * 22 20 19 43 43 H 1.09003 * 109.57147 * 42.60073 * 23 22 20 44 44 H 1.08993 * 109.58011 * 162.85916 * 23 22 20 45 45 H 1.09002 * 108.76600 * 213.07350 * 24 23 22 46 46 H 1.09002 * 108.77228 * 331.23903 * 24 23 22 47 47 H 1.08992 * 108.91809 * 79.02483 * 25 24 23 48 48 H 1.09004 * 108.91789 * 197.57809 * 25 24 23 49 49 H 1.09006 * 108.97537 * 79.55937 * 26 25 24 50 50 H 1.08996 * 108.97839 * 198.26519 * 26 25 24 51 51 H 1.00909 * 110.99704 * 333.55537 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.8280 -2.5197 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8074 -1.1187 -4.0079 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5717 -1.4801 3.7807 16 6 1.3800 0.2139 4.8897 17 8 0.6820 1.2002 4.7785 18 7 1.7057 -0.2467 6.1139 19 6 1.2174 0.4439 7.3101 20 6 1.7268 -0.2778 8.5592 21 1 2.8103 -0.1693 8.6095 22 6 1.1368 0.3482 9.7371 23 6 1.6521 -0.2975 11.0428 24 6 0.9473 -1.6112 11.2463 25 6 1.7134 -2.8070 10.6432 26 6 2.3102 -2.4813 9.2607 27 7 1.3992 -1.7146 8.4461 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7095 1.1619 -3.4844 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.9943 0.7582 2.3564 38 1 2.2634 -1.0353 6.2028 39 1 1.5807 1.4716 7.3101 40 1 0.1273 0.4439 7.3100 41 1 1.3894 1.4086 9.7408 42 1 0.0530 0.2421 9.6913 43 1 2.7262 -0.4671 10.9671 44 1 1.4453 0.3642 11.8839 45 1 0.8206 -1.7792 12.3159 46 1 -0.0379 -1.5562 10.7832 47 1 2.5209 -3.0868 11.3197 48 1 1.0301 -3.6504 10.5434 49 1 3.2294 -1.9114 9.3967 50 1 2.5457 -3.4136 8.7476 51 1 0.4416 -1.8891 8.7124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911014426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:42 Heat of formation + Delta-G solvation = -86.484276 kcal Electronic energy + Delta-G solvation = -28134.101481 eV Core-core repulsion = 24260.645264 eV Total energy + Delta-G solvation = -3873.456217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.48244 -39.76857 -38.15624 -36.40699 -35.32009 -33.36925 -33.31801 -32.66211 -30.83449 -28.07891 -26.31429 -25.80842 -25.67900 -25.19860 -23.98912 -22.38579 -21.54536 -20.21238 -19.88410 -18.91799 -18.17680 -16.55456 -16.45515 -16.01748 -15.87515 -15.61877 -15.46131 -15.16370 -14.77793 -14.68409 -14.26258 -14.18767 -13.48705 -13.42305 -13.26004 -13.12346 -12.91207 -12.84813 -12.65292 -12.22776 -12.17241 -11.66242 -11.35625 -11.34963 -11.29844 -11.20486 -11.12620 -10.99035 -10.82872 -10.79309 -10.71288 -10.35419 -10.16886 -9.60627 -9.46869 -9.14380 -9.12633 -8.85560 -8.76673 -8.51842 -8.32807 -5.99193 -4.09867 1.80138 2.73195 3.32049 3.36504 3.39742 3.60754 3.78374 3.99530 4.21996 4.27527 4.39626 4.42548 4.52401 4.61237 4.77178 4.94171 4.95223 5.05248 5.18579 5.24183 5.27158 5.30427 5.40200 5.48327 5.51797 5.59071 5.66538 5.71156 5.75247 5.82739 6.17632 6.29331 6.31245 6.52295 6.62652 6.71047 6.89452 6.89883 6.99727 7.00405 7.04957 7.30896 7.39224 7.59326 7.71689 7.86513 8.04112 8.09642 8.19061 8.38935 8.50094 8.90129 9.55673 11.02117 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.033268 B = 0.002051 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.453544 B =13649.755277 C =14158.536066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.682 5.682 14 C 0.496 3.504 15 O -0.535 6.535 16 C 0.504 3.496 17 O -0.529 6.529 18 N -0.689 5.689 19 C 0.127 3.873 20 C 0.069 3.931 21 H 0.085 0.915 22 C -0.148 4.148 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.152 4.152 26 C 0.053 3.947 27 N -0.665 5.665 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.419 0.581 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -1.902 27.449 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.334 5.334 14 C 0.275 3.725 15 O -0.413 6.413 16 C 0.285 3.715 17 O -0.405 6.405 18 N -0.343 5.343 19 C 0.003 3.997 20 C -0.041 4.041 21 H 0.103 0.897 22 C -0.187 4.187 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.191 4.191 26 C -0.077 4.077 27 N -0.295 5.295 28 H 0.028 0.972 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.256 0.744 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.525 -1.884 26.657 26.729 hybrid contribution -0.064 -0.275 0.189 0.340 sum 0.461 -2.159 26.847 26.937 Atomic orbital electron populations 1.21851 0.97602 0.99273 1.00369 1.18377 0.92976 0.92859 0.90300 1.21851 0.98590 0.98278 1.00373 1.20913 1.31652 1.12147 0.89792 0.92421 1.24889 0.94869 0.94938 0.98857 1.69801 1.36503 1.22633 1.23349 0.86616 0.79195 0.79757 0.82170 1.20288 1.21357 1.20301 1.21913 0.98477 0.96027 0.82934 1.46205 1.50582 1.31443 1.05168 1.20001 0.82302 0.85228 0.84949 1.90718 1.38033 1.25730 1.86793 1.20464 0.81191 0.84697 0.85139 1.90739 1.37051 1.25782 1.86972 1.45548 1.52585 1.32142 1.04032 1.21490 0.99651 0.95512 0.83081 1.20781 1.01073 0.88837 0.93410 0.89711 1.21218 1.01470 1.01274 0.94753 1.21361 1.00636 0.96365 0.97195 1.21393 0.99399 0.94428 1.01012 1.22643 1.00497 0.98115 0.97892 1.21887 0.95885 0.99082 0.90847 1.60939 1.07980 1.04609 1.55948 0.97237 0.89487 0.95365 0.95379 0.89480 0.97244 0.92920 0.92100 0.92074 0.75267 0.74353 0.90901 0.91289 0.90721 0.91262 0.91524 0.91475 0.92052 0.92161 0.91709 0.91758 0.91658 0.90599 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.80 9.35 55.43 0.52 -23.29 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.76 4.50 -4.05 -0.02 2.74 16 13 N -0.68 -13.11 4.95 -60.73 -0.30 -13.41 16 14 C 0.50 9.07 7.89 -11.58 -0.09 8.98 16 15 O -0.53 -10.65 16.48 5.50 0.09 -10.56 16 16 C 0.50 8.07 7.89 -11.58 -0.09 7.98 16 17 O -0.53 -9.47 16.48 5.50 0.09 -9.38 16 18 N -0.69 -8.52 5.35 -60.73 -0.32 -8.85 16 19 C 0.13 1.20 5.28 -4.05 -0.02 1.17 16 20 C 0.07 0.46 2.10 -70.60 -0.15 0.31 16 21 H 0.08 0.57 7.24 -51.93 -0.38 0.20 16 22 C -0.15 -0.78 4.52 -29.32 -0.13 -0.91 16 23 C -0.12 -0.56 5.60 -27.20 -0.15 -0.71 16 24 C -0.12 -0.59 5.28 -27.32 -0.14 -0.74 16 25 C -0.15 -0.77 5.92 -25.50 -0.15 -0.92 16 26 C 0.05 0.33 6.01 -4.67 -0.03 0.30 16 27 N -0.66 -4.69 5.72 -110.98 -0.64 -5.32 16 28 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 33 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.41 7.77 5.64 -40.82 -0.23 7.54 16 38 H 0.42 5.09 7.47 -40.82 -0.30 4.79 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.07 0.37 8.12 -51.92 -0.42 -0.05 16 42 H 0.07 0.37 7.59 -51.93 -0.39 -0.02 16 43 H 0.07 0.33 7.15 -51.93 -0.37 -0.04 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.30 6.79 -51.93 -0.35 -0.05 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.39 6.51 -51.93 -0.34 0.06 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.34 2.31 7.36 -39.29 -0.29 2.02 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -28.55 389.32 -9.15 -37.70 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.61 Total: 9.54 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.82 Total: 1.93 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.74 Total: -50.87 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.55 -9.15 -37.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911014426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.783 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds