Wall clock time and date at job start Fri Apr 10 2020 18:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.50700 * 109.46986 * 240.00280 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99946 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99763 * 4 2 1 7 7 N 1.31514 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46717 * 59.99948 * 8 6 4 10 10 H 1.48497 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46828 * 299.99949 * 8 6 4 12 12 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 13 13 N 1.46499 * 109.47267 * 300.00079 * 12 2 1 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 2 15 15 O 1.21341 * 119.99750 * 359.72803 * 14 13 12 16 16 C 1.49449 * 119.99546 * 179.97438 * 14 13 12 17 17 O 1.21346 * 120.00675 * 0.02562 * 16 14 13 18 18 N 1.34784 * 119.99546 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99971 * 180.02562 * 18 16 14 20 20 C 1.52992 * 109.47267 * 179.97438 * 19 18 16 21 21 H 1.09001 * 108.76466 * 66.63719 * 20 19 18 22 22 C 1.45857 * 108.79697 * 184.99919 * 20 19 18 23 23 C 1.54510 * 111.60266 * 182.21074 * 22 20 19 24 24 C 1.50467 * 108.84281 * 282.79723 * 23 22 20 25 25 C 1.54291 * 113.03106 * 92.15807 * 24 23 22 26 26 C 1.54071 * 112.28706 * 318.29892 * 25 24 23 27 27 N 1.44265 * 111.98844 * 318.91648 * 26 25 24 28 28 H 1.08996 * 109.47248 * 299.99428 * 1 2 3 29 29 H 1.08996 * 109.47200 * 60.00228 * 1 2 3 30 30 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47244 * 300.00375 * 3 2 1 33 33 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 34 34 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47330 * 179.97438 * 12 2 1 36 36 H 1.09005 * 109.47124 * 60.00187 * 12 2 1 37 37 H 0.96999 * 119.99984 * 359.97438 * 13 12 2 38 38 H 0.96999 * 120.00044 * 0.02562 * 18 16 14 39 39 H 1.09005 * 109.47136 * 300.00073 * 19 18 16 40 40 H 1.09004 * 109.47024 * 59.99690 * 19 18 16 41 41 H 1.09008 * 109.05669 * 302.75488 * 22 20 19 42 42 H 1.09000 * 109.05936 * 61.66344 * 22 20 19 43 43 H 1.09003 * 109.57147 * 42.60073 * 23 22 20 44 44 H 1.08993 * 109.58011 * 162.85916 * 23 22 20 45 45 H 1.09002 * 108.76600 * 213.07350 * 24 23 22 46 46 H 1.09002 * 108.77228 * 331.23903 * 24 23 22 47 47 H 1.08992 * 108.91809 * 79.02483 * 25 24 23 48 48 H 1.09004 * 108.91789 * 197.57809 * 25 24 23 49 49 H 1.09006 * 108.97537 * 79.55937 * 26 25 24 50 50 H 1.08996 * 108.97839 * 198.26519 * 26 25 24 51 51 H 1.00909 * 110.99704 * 333.55537 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.8280 -2.5197 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8074 -1.1187 -4.0079 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4910 3.6695 15 8 2.5717 -1.4801 3.7807 16 6 1.3800 0.2139 4.8897 17 8 0.6820 1.2002 4.7785 18 7 1.7057 -0.2467 6.1139 19 6 1.2174 0.4439 7.3101 20 6 1.7268 -0.2778 8.5592 21 1 2.8103 -0.1693 8.6095 22 6 1.1368 0.3482 9.7371 23 6 1.6521 -0.2975 11.0428 24 6 0.9473 -1.6112 11.2463 25 6 1.7134 -2.8070 10.6432 26 6 2.3102 -2.4813 9.2607 27 7 1.3992 -1.7146 8.4461 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7095 1.1619 -3.4844 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.9943 0.7582 2.3564 38 1 2.2634 -1.0353 6.2028 39 1 1.5807 1.4716 7.3101 40 1 0.1273 0.4439 7.3100 41 1 1.3894 1.4086 9.7408 42 1 0.0530 0.2421 9.6913 43 1 2.7262 -0.4671 10.9671 44 1 1.4453 0.3642 11.8839 45 1 0.8206 -1.7792 12.3159 46 1 -0.0379 -1.5562 10.7832 47 1 2.5209 -3.0868 11.3197 48 1 1.0301 -3.6504 10.5434 49 1 3.2294 -1.9114 9.3967 50 1 2.5457 -3.4136 8.7476 51 1 0.4416 -1.8891 8.7124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911014426.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:41 Heat of formation + Delta-G solvation = -105.856124 kcal Electronic energy + Delta-G solvation = -28134.941507 eV Core-core repulsion = 24260.645264 eV Total energy + Delta-G solvation = -3874.296244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68092 -40.54370 -39.51171 -38.16184 -36.26686 -34.99393 -33.77390 -33.48468 -32.71508 -28.94710 -27.68900 -27.57611 -27.14897 -26.43364 -24.96941 -23.43014 -22.17087 -21.29341 -20.68244 -20.53042 -19.60131 -17.97510 -17.63832 -17.22422 -16.86610 -16.66537 -16.51158 -16.38760 -16.10134 -15.60632 -15.47263 -15.27021 -14.80729 -14.66076 -14.49391 -14.04874 -14.02062 -13.75539 -13.69190 -13.38727 -13.19702 -13.10686 -12.89604 -12.71415 -12.66971 -12.60496 -12.25956 -12.13978 -12.10924 -11.79489 -11.60576 -11.49321 -11.41612 -11.28860 -11.25107 -10.74712 -10.57903 -10.39239 -10.20965 -10.07315 -9.38739 -7.99898 -6.16401 0.42639 1.44195 1.47120 1.48843 1.55202 2.22271 2.47024 2.80246 3.23618 3.25932 3.53322 3.63440 3.82848 4.01040 4.05147 4.11861 4.33382 4.36662 4.44009 4.48847 4.55433 4.67215 4.69311 4.73411 4.79426 4.85774 4.91321 4.94400 5.05325 5.08049 5.10138 5.16653 5.18421 5.22059 5.24964 5.26984 5.30411 5.34948 5.44194 5.49735 5.65882 5.68641 6.04067 6.11747 6.12313 6.20265 6.42424 6.46920 6.50218 6.82703 6.88954 7.04302 7.51215 8.99147 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.033268 B = 0.002051 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.453544 B =13649.755277 C =14158.536066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.050 3.950 3 C -0.123 4.123 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.143 3.857 13 N -0.683 5.683 14 C 0.496 3.504 15 O -0.552 6.552 16 C 0.509 3.491 17 O -0.550 6.550 18 N -0.670 5.670 19 C 0.123 3.877 20 C 0.081 3.919 21 H 0.087 0.913 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.147 4.147 26 C 0.055 3.945 27 N -0.677 5.677 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.421 0.579 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -1.969 29.174 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.334 5.334 14 C 0.277 3.723 15 O -0.430 6.430 16 C 0.289 3.711 17 O -0.428 6.428 18 N -0.323 5.323 19 C 0.000 4.000 20 C -0.029 4.029 21 H 0.106 0.894 22 C -0.184 4.184 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.186 4.186 26 C -0.075 4.075 27 N -0.307 5.307 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.964 28.428 28.504 hybrid contribution -0.105 -0.280 -0.278 0.408 sum 0.588 -2.244 28.150 28.246 Atomic orbital electron populations 1.21701 0.97355 0.98866 1.00190 1.18386 0.93159 0.93043 0.90523 1.21698 0.98199 0.98001 1.00198 1.21203 1.31798 1.12272 0.91136 0.93060 1.25516 0.95165 0.95621 1.01183 1.69921 1.36988 1.23347 1.23676 0.85757 0.78635 0.78747 0.79293 1.20110 1.21113 1.20103 1.21533 0.97875 0.95466 0.83092 1.46061 1.50875 1.31485 1.05025 1.20422 0.81598 0.84905 0.85368 1.90707 1.38700 1.26518 1.87124 1.19985 0.81402 0.84452 0.85298 1.90737 1.38314 1.26637 1.87125 1.45578 1.51234 1.31695 1.03767 1.21757 0.99662 0.95905 0.82695 1.20684 1.01150 0.88526 0.92549 0.89442 1.21168 1.01432 1.01517 0.94271 1.21330 1.00499 0.96354 0.96988 1.21382 0.99229 0.94284 1.01195 1.22575 1.00550 0.98224 0.97241 1.21844 0.95849 0.98549 0.91242 1.60902 1.08336 1.04883 1.56588 0.95196 0.91763 0.95817 0.95780 0.91769 0.95182 0.93055 0.92795 0.92860 0.74982 0.74047 0.90400 0.91377 0.90116 0.91155 0.91601 0.90804 0.91662 0.92302 0.91307 0.91965 0.91443 0.91482 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.08 71.98 0.58 -5.13 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 4 C -0.53 -27.66 8.01 25.60 0.21 -27.46 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.02 1.31 5.15 84.65 0.44 1.75 16 7 N -0.90 -48.71 9.35 21.45 0.20 -48.51 16 8 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.14 6.11 4.50 86.38 0.39 6.50 16 13 N -0.68 -25.69 4.95 -464.41 -2.30 -27.99 16 14 C 0.50 17.72 7.89 87.27 0.69 18.41 16 15 O -0.55 -21.55 16.48 -3.22 -0.05 -21.60 16 16 C 0.51 15.66 7.89 87.27 0.69 16.34 16 17 O -0.55 -18.95 16.48 -3.23 -0.05 -19.01 16 18 N -0.67 -15.58 5.35 -464.41 -2.48 -18.07 16 19 C 0.12 2.10 5.28 86.38 0.46 2.55 16 20 C 0.08 0.93 2.10 42.55 0.09 1.02 16 21 H 0.09 1.00 7.24 -2.39 -0.02 0.98 16 22 C -0.14 -1.21 4.52 28.92 0.13 -1.08 16 23 C -0.11 -0.83 5.60 30.29 0.17 -0.66 16 24 C -0.12 -0.94 5.28 30.21 0.16 -0.78 16 25 C -0.15 -1.25 5.92 31.39 0.19 -1.06 16 26 C 0.06 0.60 6.01 87.16 0.52 1.13 16 27 N -0.68 -8.52 5.72 -505.03 -2.89 -11.42 16 28 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 29 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 30 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 33 H 0.03 1.22 6.86 -2.38 -0.02 1.20 16 34 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.41 15.18 5.64 -92.71 -0.52 14.66 16 38 H 0.42 9.61 7.47 -92.71 -0.69 8.92 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.23 8.13 -2.38 -0.02 1.21 16 41 H 0.08 0.61 8.12 -2.38 -0.02 0.59 16 42 H 0.07 0.60 7.59 -2.39 -0.02 0.58 16 43 H 0.07 0.51 7.15 -2.39 -0.02 0.49 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.48 6.79 -2.39 -0.02 0.46 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.70 6.51 -2.38 -0.02 0.69 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.35 4.12 7.36 -89.69 -0.66 3.46 16 Total: -1.00 -59.62 389.32 -1.22 -60.85 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.93 Total: 32.40 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.26 Total: 8.72 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -7.47 Total: -105.99 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.11 Total: -40.61 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -59.62 -1.22 -60.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911014426.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.010 kcal (2) G-P(sol) polarization free energy of solvation -59.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds