Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47385 * 2 1 4 4 C 1.53006 * 109.46766 * 119.99970 * 2 1 3 5 5 C 1.53008 * 109.46804 * 185.00132 * 4 2 1 6 6 C 1.52996 * 109.46809 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.46929 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47233 * 180.02562 * 7 6 5 9 9 C 1.36931 * 119.99939 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00644 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99715 * 179.97438 * 9 8 7 12 12 N 1.31611 * 120.00107 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99746 * 179.72150 * 11 9 8 14 14 H 1.48506 * 109.46826 * 60.00664 * 13 11 9 15 15 H 1.48497 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47422 * 300.00472 * 13 11 9 17 17 N 1.46502 * 109.47307 * 239.99844 * 2 1 3 18 18 C 1.34775 * 119.99842 * 84.99882 * 17 2 1 19 19 O 1.21278 * 120.00009 * 0.02562 * 18 17 2 20 20 C 1.50701 * 119.99753 * 179.97438 * 18 17 2 21 21 H 1.09002 * 109.67363 * 299.50524 * 20 18 17 22 22 C 1.53344 * 109.67234 * 178.97101 * 20 18 17 23 23 C 1.52902 * 108.68673 * 172.75327 * 22 20 18 24 24 N 1.45753 * 110.49993 * 50.71663 * 23 22 20 25 25 C 1.46502 * 117.94806 * 160.93890 * 24 23 22 26 26 C 1.33350 * 124.10634 * 340.97188 * 24 23 22 27 27 O 1.21280 * 118.24887 * 182.21574 * 26 24 23 28 28 C 1.50176 * 123.50939 * 2.19030 * 26 24 23 29 29 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47184 * 300.00177 * 1 2 3 31 31 H 1.09002 * 109.47039 * 60.00141 * 1 2 3 32 32 H 1.08996 * 109.46952 * 65.00231 * 4 2 1 33 33 H 1.09002 * 109.47088 * 304.99668 * 4 2 1 34 34 H 1.09000 * 109.47043 * 59.99847 * 5 4 2 35 35 H 1.09002 * 109.46920 * 299.99640 * 5 4 2 36 36 H 1.09000 * 109.47441 * 60.00093 * 6 5 4 37 37 H 1.08994 * 109.47235 * 299.99823 * 6 5 4 38 38 H 1.09001 * 109.47671 * 60.00109 * 7 6 5 39 39 H 1.09006 * 109.47297 * 299.99829 * 7 6 5 40 40 H 0.97000 * 119.99307 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00330 * 179.97438 * 12 11 9 42 42 H 0.97008 * 119.99638 * 265.00529 * 17 2 1 43 43 H 1.09009 * 109.60247 * 292.48842 * 22 20 18 44 44 H 1.08996 * 109.60506 * 52.97756 * 22 20 18 45 45 H 1.09007 * 109.28153 * 290.41524 * 23 22 20 46 46 H 1.08998 * 109.14436 * 170.93837 * 23 22 20 47 47 H 1.09002 * 109.47161 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.47192 * 300.02728 * 25 24 23 49 49 H 1.09004 * 109.46838 * 60.02997 * 25 24 23 50 50 H 1.08998 * 109.40573 * 222.28972 * 28 26 24 51 51 H 1.09004 * 109.40056 * 102.54572 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0746 -1.3340 2.5634 7 6 5.5994 -1.2255 2.6282 8 7 6.0877 -1.9161 3.8244 9 6 7.4297 -1.9524 4.0941 10 1 8.1283 -1.4723 3.4249 11 6 7.8923 -2.6063 5.2278 12 7 7.0412 -3.1918 6.0432 13 14 9.7237 -2.6626 5.5917 14 1 10.2418 -1.2786 5.7393 15 1 9.9554 -3.4152 6.8506 16 1 10.4300 -3.3389 4.4740 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3571 19 8 1.8590 1.1585 -2.4115 20 6 2.6500 -0.7286 -3.5874 21 1 3.6529 -1.1142 -3.4043 22 6 2.6789 0.2462 -4.7707 23 6 3.3590 -0.4411 -5.9552 24 7 2.7625 -1.7487 -6.1978 25 6 2.9697 -2.3650 -7.5106 26 6 2.0394 -2.4189 -5.2999 27 8 1.6268 -3.5190 -5.6008 28 6 1.7091 -1.8847 -3.9358 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7515 -1.7715 1.2056 33 1 1.6053 -0.2617 2.1370 34 1 3.8531 0.4370 1.3574 35 1 3.9994 -1.0729 0.4261 36 1 3.7863 -2.3843 2.5202 37 1 3.6400 -0.8741 3.4508 38 1 5.8875 -0.1751 2.6717 39 1 6.0345 -1.6851 1.7407 40 1 5.4603 -2.3476 4.4253 41 1 7.3644 -3.6491 6.8352 42 1 2.2490 -1.6319 -1.1525 43 1 1.6598 0.5207 -5.0435 44 1 3.2394 1.1395 -4.4950 45 1 4.4204 -0.5639 -5.7392 46 1 3.2416 0.1789 -6.8439 47 1 2.4674 -3.3319 -7.5414 48 1 2.5587 -1.7172 -8.2850 49 1 4.0371 -2.5044 -7.6821 50 1 1.8231 -2.6792 -3.1983 51 1 0.6790 -1.5285 -3.9261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171568831.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -110.732321 kcal Electronic energy + Delta-G solvation = -27535.009012 eV Core-core repulsion = 23660.501321 eV Total energy + Delta-G solvation = -3874.507691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85485 -40.65493 -38.18008 -37.38715 -36.77161 -35.19937 -34.72196 -32.91117 -31.65650 -30.61607 -28.81200 -28.34618 -25.97812 -25.67078 -24.36077 -23.48185 -22.04025 -21.73823 -21.32962 -19.72334 -19.12259 -18.39615 -17.71218 -17.42860 -17.10541 -16.70281 -16.61143 -16.28872 -16.01228 -15.42242 -15.32431 -15.28680 -14.89608 -14.81900 -14.52950 -14.33864 -14.13154 -13.93168 -13.62546 -13.27005 -13.19832 -13.03006 -12.86793 -12.83372 -12.77254 -12.65568 -12.43869 -12.26709 -12.19696 -12.02594 -11.99813 -11.87093 -11.78942 -11.48375 -11.37219 -11.28585 -10.92872 -10.55550 -10.03300 -9.76365 -9.01519 -7.96445 -5.25762 1.46491 1.49999 1.51146 1.56282 1.62433 2.01577 2.20278 2.55435 3.36680 3.38730 3.56471 3.60540 3.69556 3.71882 4.05726 4.07498 4.13163 4.20886 4.23264 4.35057 4.37697 4.44614 4.47017 4.60634 4.62258 4.63907 4.66522 4.72247 4.77299 4.83159 4.89448 4.95921 4.97399 4.99357 5.00983 5.04194 5.15223 5.19410 5.28745 5.34850 5.37409 5.46108 5.46644 5.54404 5.62695 6.26300 6.36968 6.58094 7.05804 7.26923 7.31902 8.09111 8.32070 9.26974 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.002094 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.663530 B =13371.210058 C =14632.354048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.250 4.250 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.277 1.277 17 N -0.713 5.713 18 C 0.522 3.478 19 O -0.574 6.574 20 C -0.105 4.105 21 H 0.123 0.877 22 C -0.113 4.113 23 C 0.113 3.887 24 N -0.606 5.606 25 C 0.065 3.935 26 C 0.514 3.486 27 O -0.599 6.599 28 C -0.117 4.117 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.117 0.883 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 6.953 -26.620 30.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.022 3.978 8 N -0.393 5.393 9 C -0.382 4.382 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.203 1.203 17 N -0.365 5.365 18 C 0.309 3.691 19 O -0.454 6.454 20 C -0.126 4.126 21 H 0.141 0.859 22 C -0.151 4.151 23 C -0.009 4.009 24 N -0.338 5.338 25 C -0.077 4.077 26 C 0.303 3.697 27 O -0.482 6.482 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.249 0.751 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.136 0.864 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.827 7.300 -26.829 31.052 hybrid contribution 0.847 -0.676 0.816 1.357 sum -12.980 6.624 -26.013 29.816 Atomic orbital electron populations 1.22116 0.94545 1.02746 1.02192 1.20940 0.94292 0.96778 0.83996 0.91138 1.21851 0.94789 1.01911 0.97033 1.21420 0.95728 1.00182 0.96858 1.21607 0.93755 1.00902 0.98861 1.20868 0.94241 0.94275 0.88444 1.42641 1.04523 1.65399 1.26697 1.19623 0.85355 1.27841 1.05403 0.90807 1.25630 1.02320 1.01225 0.97838 1.69806 1.34802 1.41856 1.15567 0.85175 0.79764 0.77683 0.76924 1.20327 1.21963 1.20261 1.46132 1.66425 1.14685 1.09267 1.20687 0.76747 0.86745 0.84932 1.90702 1.51528 1.17535 1.85589 1.21460 1.01830 0.96105 0.93226 0.85881 1.21693 1.02828 0.98192 0.92395 1.21646 0.97815 0.81824 0.99576 1.47390 1.51249 1.20429 1.14703 1.21886 1.02801 0.99821 0.83239 1.20344 0.77413 0.84501 0.87427 1.90710 1.55046 1.22562 1.79850 1.21591 1.01538 0.98735 0.93783 0.91324 0.90807 0.93633 0.89977 0.89794 0.92497 0.91338 0.92011 0.92578 0.96854 0.96339 0.79459 0.93906 0.75137 0.91090 0.88426 0.89581 0.87967 0.91334 0.90213 0.90360 0.86435 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.14 2.31 2.57 44.99 0.12 2.42 16 3 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.12 -1.89 4.75 30.60 0.15 -1.74 16 5 C -0.10 -2.22 5.10 30.60 0.16 -2.06 16 6 C -0.11 -3.37 5.33 30.59 0.16 -3.21 16 7 C 0.15 5.90 6.26 86.38 0.54 6.44 16 8 N -0.75 -39.01 5.60 -343.44 -1.92 -40.94 16 9 C -0.25 -14.29 9.99 84.04 0.84 -13.45 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 12 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 13 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 N -0.71 -9.83 4.44 -442.54 -1.96 -11.80 16 18 C 0.52 8.52 7.10 87.66 0.62 9.14 16 19 O -0.57 -13.81 15.56 -3.02 -0.05 -13.86 16 20 C -0.10 -1.15 2.60 -11.40 -0.03 -1.18 16 21 H 0.12 1.03 8.13 -2.39 -0.02 1.01 16 22 C -0.11 -1.12 4.71 30.68 0.14 -0.97 16 23 C 0.11 0.79 6.40 86.49 0.55 1.34 16 24 N -0.61 -7.67 3.21 -851.63 -2.73 -10.40 16 25 C 0.06 0.70 10.48 127.77 1.34 2.04 16 26 C 0.51 9.06 7.47 87.71 0.66 9.71 16 27 O -0.60 -15.84 15.95 -3.03 -0.05 -15.89 16 28 C -0.12 -1.41 5.18 29.71 0.15 -1.26 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.37 20.49 7.67 -92.71 -0.71 19.78 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.41 4.00 8.29 -92.70 -0.77 3.23 16 43 H 0.07 0.84 8.12 -2.38 -0.02 0.82 16 44 H 0.10 1.03 7.89 -2.39 -0.02 1.01 16 45 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.10 0.35 8.10 -2.39 -0.02 0.33 16 47 H 0.07 1.11 6.59 -2.39 -0.02 1.09 16 48 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.12 1.18 7.92 -2.39 -0.02 1.16 16 51 H 0.11 1.29 8.09 -2.39 -0.02 1.27 16 Total: -1.00 -77.95 409.75 1.57 -76.38 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.57 Total: 26.21 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.55 Total: 1.54 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -6.34 Total: -122.77 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.10 Total: -29.75 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.95 1.57 -76.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171568831.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.348 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds