Wall clock time and date at job start Fri Apr 10 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47202 * 2 1 4 4 C 1.52996 * 109.47153 * 240.00401 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99932 * 4 2 1 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47294 * 179.97438 * 7 6 5 9 9 C 1.36935 * 120.00627 * 179.97438 * 8 7 6 10 10 H 1.08012 * 119.99691 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00809 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99595 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00541 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47272 * 119.99947 * 13 11 9 16 16 H 1.48504 * 109.47033 * 240.00010 * 13 11 9 17 17 N 1.46501 * 109.47432 * 119.99880 * 2 1 3 18 18 C 1.34774 * 119.99941 * 275.00459 * 17 2 1 19 19 O 1.21277 * 120.00419 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99553 * 179.97438 * 18 17 2 21 21 H 1.09001 * 108.57053 * 297.93031 * 20 18 17 22 22 C 1.51781 * 108.61693 * 55.73670 * 20 18 17 23 23 C 1.52949 * 110.88312 * 188.10602 * 22 20 18 24 24 N 1.47190 * 108.69133 * 273.54947 * 23 22 20 25 25 C 1.33367 * 120.43427 * 71.95001 * 24 23 22 26 26 O 1.21278 * 119.89628 * 179.74655 * 25 24 23 27 27 C 1.51427 * 120.21145 * 359.72748 * 25 24 23 28 28 C 1.51792 * 108.61464 * 179.97438 * 20 18 17 29 29 H 1.09002 * 109.47186 * 299.99730 * 1 2 3 30 30 H 1.08997 * 109.47659 * 59.99575 * 1 2 3 31 31 H 1.09007 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47452 * 54.99933 * 4 2 1 33 33 H 1.09001 * 109.46997 * 294.99506 * 4 2 1 34 34 H 1.09001 * 109.47502 * 60.00153 * 5 4 2 35 35 H 1.09001 * 109.47289 * 299.99950 * 5 4 2 36 36 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 37 37 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 38 38 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 39 39 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 40 40 H 0.97006 * 119.99755 * 359.97438 * 8 7 6 41 41 H 0.97000 * 120.00324 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99400 * 95.00175 * 17 2 1 43 43 H 1.08993 * 109.19726 * 308.47795 * 22 20 18 44 44 H 1.08999 * 109.19515 * 67.75484 * 22 20 18 45 45 H 1.09000 * 109.58548 * 153.79244 * 23 22 20 46 46 H 1.08994 * 109.72838 * 33.39467 * 23 22 20 47 47 H 0.97005 * 119.78446 * 251.97348 * 24 23 22 48 48 H 1.09001 * 109.63338 * 169.08040 * 27 25 24 49 49 H 1.08996 * 109.80247 * 48.57361 * 27 25 24 50 50 H 1.09002 * 109.22695 * 292.39337 * 28 20 18 51 51 H 1.08996 * 109.22142 * 51.78381 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2275 -2.6268 8 7 6.0881 -1.9190 -3.8223 9 6 7.4301 -1.9556 -4.0920 10 1 8.1286 -1.4741 -3.4234 11 6 7.8930 -2.6103 -5.2250 12 7 7.0418 -3.1966 -6.0401 13 14 9.7238 -2.6608 -5.5924 14 1 10.4622 -1.9328 -4.5294 15 1 10.1813 -4.0728 -5.6354 16 1 9.9832 -2.0162 -6.9049 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8589 1.1586 2.4115 20 6 2.6489 -0.7288 3.5877 21 1 1.9466 -1.5232 3.8404 22 6 3.9933 -1.3574 3.2697 23 6 4.4584 -2.2584 4.4149 24 7 5.1756 -1.4348 5.4017 25 6 4.5098 -0.5819 6.1814 26 8 5.1100 0.0887 6.9944 27 6 3.0068 -0.4478 6.0547 28 6 2.6928 0.2630 4.7359 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2056 34 1 3.9994 -1.0727 -0.4260 35 1 3.8531 0.4371 -1.3573 36 1 3.7865 -2.3852 -2.5186 37 1 3.6402 -0.8757 -3.4505 38 1 5.8884 -0.1773 -2.6706 39 1 6.0339 -1.6869 -1.7388 40 1 5.4608 -2.3511 -4.4230 41 1 7.3651 -3.6545 -6.8317 42 1 2.2490 -1.6317 1.1525 43 1 3.9053 -1.9508 2.3598 44 1 4.7294 -0.5690 3.1127 45 1 5.1257 -3.0278 4.0265 46 1 3.5955 -2.7272 4.8878 47 1 6.1389 -1.5125 5.4851 48 1 2.6198 0.1386 6.8881 49 1 2.5464 -1.4358 6.0570 50 1 3.4632 1.0082 4.5372 51 1 1.7261 0.7597 4.8183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171922898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:28 Heat of formation + Delta-G solvation = -97.514718 kcal Electronic energy + Delta-G solvation = -27821.655189 eV Core-core repulsion = 23947.720656 eV Total energy + Delta-G solvation = -3873.934533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01946 -39.85375 -37.37019 -36.66096 -35.32615 -34.22177 -33.34702 -32.12072 -31.07392 -30.20846 -27.57697 -27.48993 -24.63064 -24.23127 -22.84883 -21.94218 -20.93238 -20.72869 -20.45923 -19.97273 -18.00552 -17.58072 -17.04329 -16.79543 -16.55658 -15.58983 -15.16930 -15.09609 -14.75582 -14.55455 -14.29775 -14.10266 -14.08031 -13.79096 -13.45220 -13.22218 -13.15703 -12.97349 -12.85961 -12.74279 -12.46011 -12.15278 -11.90774 -11.81745 -11.51836 -11.42079 -11.30199 -11.22139 -11.03014 -10.84928 -10.75390 -10.44249 -10.35770 -10.12185 -10.04548 -9.98825 -9.69882 -9.52582 -9.27904 -8.88905 -6.93035 -5.78138 -3.06637 2.30106 2.36904 2.86435 2.92048 3.41779 3.47504 3.49765 4.02212 4.10730 4.19428 4.22295 4.46960 4.61139 4.66864 4.73168 4.82765 4.84569 4.91495 4.92853 4.97272 5.00457 5.20230 5.26724 5.33345 5.37172 5.40352 5.51274 5.53807 5.57961 5.64624 5.67226 5.74167 5.80628 5.84988 5.90462 6.05028 6.17401 6.25713 6.33109 6.34796 6.40997 6.42066 6.85504 6.86236 6.89510 7.23571 7.68880 7.88249 7.96771 8.41297 9.52129 10.11106 10.45494 11.45020 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.002388 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.184384 B =11721.850523 C =13796.957892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.721 5.721 18 C 0.516 3.484 19 O -0.538 6.538 20 C -0.107 4.107 21 H 0.099 0.901 22 C -0.139 4.139 23 C 0.110 3.890 24 N -0.725 5.725 25 C 0.517 3.483 26 O -0.552 6.552 27 C -0.138 4.138 28 C -0.095 4.095 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.400 0.600 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.402 0.598 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.074 0.926 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 0.611 21.934 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.373 5.373 18 C 0.302 3.698 19 O -0.415 6.415 20 C -0.128 4.128 21 H 0.117 0.883 22 C -0.178 4.178 23 C -0.014 4.014 24 N -0.378 5.378 25 C 0.304 3.696 26 O -0.430 6.430 27 C -0.178 4.178 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.235 0.765 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.238 0.762 48 H 0.119 0.881 49 H 0.109 0.891 50 H 0.093 0.907 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.471 1.873 22.381 27.272 hybrid contribution 1.269 -0.840 -0.715 1.681 sum -14.202 1.033 21.666 25.926 Atomic orbital electron populations 1.22168 0.95391 1.02035 1.02491 1.21051 0.93731 0.97754 0.83917 0.89379 1.21939 0.96867 1.00908 0.96777 1.21514 0.93941 1.01097 0.98575 1.21730 0.97260 1.00239 0.97142 1.20639 0.90976 0.95305 0.90542 1.42399 1.05357 1.64883 1.25278 1.19292 0.83909 1.28269 1.05469 0.91197 1.24752 0.97751 1.00982 0.97697 1.69672 1.32701 1.40794 1.15182 0.86114 0.85048 0.77226 0.77813 1.20545 1.21845 1.21836 1.46151 1.67338 1.14091 1.09755 1.20587 0.77343 0.87324 0.84583 1.90715 1.49892 1.15946 1.84911 1.21055 0.98598 0.99238 0.93939 0.88298 1.21893 0.96222 1.00440 0.99230 1.21762 0.98048 0.92894 0.88732 1.45988 1.11411 1.41770 1.38585 1.20620 0.90789 0.78598 0.79599 1.90768 1.70601 1.44889 1.36746 1.22011 0.92196 1.03276 1.00363 1.21045 1.04466 0.97227 0.90625 0.92321 0.91534 0.92501 0.90217 0.91348 0.92209 0.92019 0.92130 0.92048 0.96615 0.96700 0.78352 0.93574 0.76537 0.89574 0.90040 0.88657 0.90196 0.76179 0.88087 0.89121 0.90697 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.15 0.35 -0.92 16 2 C 0.14 1.20 2.57 -67.94 -0.17 1.02 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.27 5.10 -26.73 -0.14 -1.40 16 6 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 7 C 0.15 3.04 6.26 -4.05 -0.03 3.01 16 8 N -0.74 -18.79 5.60 -59.91 -0.34 -19.13 16 9 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 13 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 N -0.72 -5.25 4.33 -53.81 -0.23 -5.48 16 18 C 0.52 4.55 7.10 -10.99 -0.08 4.47 16 19 O -0.54 -7.03 15.41 5.56 0.09 -6.94 16 20 C -0.11 -0.60 2.05 -93.00 -0.19 -0.79 16 21 H 0.10 0.32 7.88 -51.93 -0.41 -0.09 16 22 C -0.14 -0.66 4.94 -27.38 -0.14 -0.80 16 23 C 0.11 0.39 6.45 -3.69 -0.02 0.36 16 24 N -0.72 -4.62 5.27 -59.93 -0.32 -4.93 16 25 C 0.52 4.74 7.06 -11.25 -0.08 4.66 16 26 O -0.55 -7.72 17.92 5.56 0.10 -7.62 16 27 C -0.14 -0.86 5.57 -27.49 -0.15 -1.02 16 28 C -0.10 -0.68 4.31 -27.31 -0.12 -0.80 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.40 2.00 7.59 -40.82 -0.31 1.69 16 43 H 0.09 0.31 6.96 -51.93 -0.36 -0.05 16 44 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 45 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.16 6.73 -51.93 -0.35 -0.19 16 47 H 0.40 2.44 8.91 -40.82 -0.36 2.08 16 48 H 0.10 0.65 8.13 -51.93 -0.42 0.23 16 49 H 0.09 0.33 6.79 -51.93 -0.35 -0.02 16 50 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 51 H 0.09 0.67 7.76 -51.93 -0.40 0.27 16 LS Contribution 404.30 15.07 6.09 6.09 Total: -1.00 -36.71 404.30 -9.29 -46.00 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -9.10 Total: 5.15 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.28 Total: -2.92 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.16 Total: -57.17 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.19 Total: -14.56 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.71 -9.29 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171922898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.520 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds