Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52999 * 109.46984 * 240.00139 * 2 1 3 5 5 C 1.53006 * 109.46623 * 174.99905 * 4 2 1 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47000 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47373 * 180.02562 * 7 6 5 9 9 C 1.36929 * 119.99988 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00181 * 0.02562 * 9 8 7 11 11 C 1.38815 * 119.99998 * 179.97438 * 9 8 7 12 12 N 1.31614 * 119.99694 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00119 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46918 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46994 * 120.00351 * 13 11 9 16 16 H 1.48494 * 109.47272 * 240.00463 * 13 11 9 17 17 N 1.46492 * 109.46798 * 119.99799 * 2 1 3 18 18 C 1.34775 * 120.00286 * 275.00127 * 17 2 1 19 19 O 1.21279 * 119.99821 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00184 * 180.02562 * 18 17 2 21 21 H 1.08997 * 108.56389 * 62.06210 * 20 18 17 22 22 C 1.51779 * 108.61434 * 304.26218 * 20 18 17 23 23 C 1.52941 * 110.88562 * 171.89448 * 22 20 18 24 24 N 1.47185 * 108.69302 * 86.44808 * 23 22 20 25 25 C 1.33376 * 120.43297 * 288.04389 * 24 23 22 26 26 O 1.21276 * 119.89476 * 180.25261 * 25 24 23 27 27 C 1.51427 * 120.21251 * 0.28919 * 25 24 23 28 28 C 1.51794 * 108.61543 * 180.02562 * 20 18 17 29 29 H 1.08998 * 109.46901 * 300.00234 * 1 2 3 30 30 H 1.08999 * 109.47112 * 60.00253 * 1 2 3 31 31 H 1.09001 * 109.46642 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 33 33 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 34 34 H 1.08993 * 109.46955 * 300.00075 * 5 4 2 35 35 H 1.09000 * 109.47050 * 59.99904 * 5 4 2 36 36 H 1.08993 * 109.47839 * 299.99931 * 6 5 4 37 37 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 38 38 H 1.09004 * 109.47107 * 300.00294 * 7 6 5 39 39 H 1.09000 * 109.46866 * 60.00185 * 7 6 5 40 40 H 0.97003 * 119.99532 * 0.02562 * 8 7 6 41 41 H 0.97010 * 119.99657 * 179.97438 * 12 11 9 42 42 H 0.97002 * 119.99805 * 95.00465 * 17 2 1 43 43 H 1.08999 * 109.19605 * 292.24301 * 22 20 18 44 44 H 1.09000 * 109.19669 * 51.52117 * 22 20 18 45 45 H 1.09001 * 109.59028 * 326.68175 * 23 22 20 46 46 H 1.09006 * 109.72565 * 206.29235 * 23 22 20 47 47 H 0.97002 * 119.78818 * 108.02861 * 24 23 22 48 48 H 1.09008 * 109.62773 * 311.50601 * 27 25 24 49 49 H 1.08997 * 109.63298 * 190.91645 * 27 25 24 50 50 H 1.09000 * 109.22135 * 308.25774 * 28 20 18 51 51 H 1.08999 * 109.22075 * 67.64652 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 6 4.0750 -1.3349 -2.5626 7 6 5.5999 -1.2275 -2.6267 8 7 6.0883 -1.9181 -3.8229 9 6 7.4303 -1.9544 -4.0925 10 1 8.1288 -1.4743 -3.4231 11 6 7.8931 -2.6091 -5.2256 12 7 7.0419 -3.1946 -6.0410 13 14 9.7238 -2.6581 -5.5939 14 1 10.4621 -1.9301 -4.5307 15 1 10.1825 -4.0698 -5.6367 16 1 9.9821 -2.0136 -6.9065 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1584 2.4117 20 6 2.6498 -0.7285 3.5875 21 1 3.6627 -1.0818 3.3946 22 6 1.7618 -1.9312 3.8495 23 6 2.3398 -2.8030 4.9653 24 7 1.8703 -2.2846 6.2603 25 6 2.3497 -1.1372 6.7427 26 8 1.9593 -0.7214 7.8129 27 6 3.3794 -0.3518 5.9579 28 6 2.6923 0.2631 4.7360 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2617 -2.1370 33 1 1.7518 -1.7715 -1.2056 34 1 3.8532 0.4370 -1.3572 35 1 3.9995 -1.0727 -0.4259 36 1 3.7867 -2.3851 -2.5186 37 1 3.6404 -0.8758 -3.4505 38 1 5.8886 -0.1773 -2.6705 39 1 6.0341 -1.6870 -1.7387 40 1 5.4609 -2.3489 -4.4242 41 1 7.3653 -3.6519 -6.8331 42 1 2.2490 -1.6317 1.1526 43 1 0.7695 -1.5872 4.1414 44 1 1.6813 -2.5227 2.9376 45 1 3.4287 -2.7673 4.9300 46 1 2.0035 -3.8322 4.8396 47 1 1.2076 -2.7804 6.7662 48 1 4.1783 -1.0182 5.6325 49 1 3.7911 0.4399 6.5838 50 1 3.2430 1.1504 4.4238 51 1 1.6744 0.5477 5.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171922900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -97.405284 kcal Electronic energy + Delta-G solvation = -27593.563822 eV Core-core repulsion = 23719.634035 eV Total energy + Delta-G solvation = -3873.929788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04980 -39.88288 -37.39252 -36.68664 -35.32538 -34.25983 -33.35211 -32.12319 -31.09052 -30.22974 -27.60326 -27.49141 -24.67760 -24.22677 -22.85387 -21.95609 -20.97625 -20.71794 -20.46469 -20.00623 -18.03041 -17.64561 -17.04247 -16.81743 -16.54975 -15.65066 -15.15770 -15.09616 -14.73336 -14.59367 -14.42185 -14.13515 -14.01971 -13.81665 -13.46315 -13.21928 -13.18054 -12.99439 -12.87745 -12.75970 -12.47470 -12.18322 -11.94367 -11.81663 -11.53007 -11.41703 -11.31346 -11.24853 -11.03227 -10.84760 -10.75191 -10.43909 -10.35263 -10.16883 -10.05836 -9.98911 -9.69762 -9.57524 -9.28914 -8.88666 -6.92748 -5.77904 -3.06301 2.25331 2.36658 2.82698 2.87819 3.41908 3.47476 3.49846 3.98412 4.07807 4.13910 4.20595 4.46475 4.60448 4.63908 4.73041 4.78083 4.85096 4.88467 4.92440 4.93629 4.98353 5.20000 5.23002 5.29618 5.36580 5.40397 5.50157 5.51824 5.57595 5.63237 5.64861 5.74352 5.79441 5.85157 5.90711 6.05328 6.17798 6.26238 6.33296 6.33974 6.35223 6.42632 6.78848 6.86079 6.90071 7.23399 7.69161 7.82274 7.96589 8.41475 9.52327 10.11436 10.45856 11.45219 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.002025 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.187667 B =13825.508511 C =14985.085231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.721 5.721 18 C 0.516 3.484 19 O -0.538 6.538 20 C -0.110 4.110 21 H 0.102 0.898 22 C -0.136 4.136 23 C 0.109 3.891 24 N -0.726 5.726 25 C 0.518 3.482 26 O -0.552 6.552 27 C -0.139 4.139 28 C -0.095 4.095 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.400 0.600 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.400 0.600 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 0.811 21.777 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.373 5.373 18 C 0.302 3.698 19 O -0.415 6.415 20 C -0.131 4.131 21 H 0.120 0.880 22 C -0.175 4.175 23 C -0.015 4.015 24 N -0.379 5.379 25 C 0.305 3.695 26 O -0.430 6.430 27 C -0.180 4.180 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.236 0.764 48 H 0.110 0.890 49 H 0.120 0.880 50 H 0.108 0.892 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.920 2.041 22.260 26.875 hybrid contribution 0.675 -1.003 -0.553 1.330 sum -14.245 1.038 21.707 25.984 Atomic orbital electron populations 1.22170 0.95418 1.02011 1.02482 1.21052 0.93705 0.97765 0.83915 0.89356 1.21941 0.96891 1.00889 0.96762 1.21515 0.93922 1.01104 0.98607 1.21729 0.97264 1.00240 0.97134 1.20648 0.90985 0.95326 0.90550 1.42398 1.05351 1.64992 1.25174 1.19294 0.83914 1.28278 1.05449 0.91174 1.24760 0.97769 1.00988 0.97730 1.69674 1.32690 1.40837 1.15128 0.86106 0.85034 0.77219 0.77794 1.20553 1.21859 1.21847 1.46149 1.67340 1.14105 1.09734 1.20573 0.77451 0.87276 0.84498 1.90716 1.49685 1.16049 1.85011 1.21070 1.01652 0.96426 0.93942 0.87971 1.21861 1.00067 0.95683 0.99853 1.21771 1.00199 0.97845 0.81712 1.45980 1.45054 1.24138 1.22683 1.20662 0.82519 0.80843 0.85499 1.90764 1.60788 1.68681 1.22769 1.22032 0.97348 1.00661 0.97910 1.21037 1.02570 0.98024 0.91648 0.92352 0.91530 0.92528 0.90224 0.91369 0.91996 0.92166 0.92141 0.92057 0.96594 0.96653 0.78355 0.93585 0.76536 0.90356 0.89761 0.89978 0.88799 0.76363 0.88957 0.87967 0.89229 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.02 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.23 16 5 C -0.11 -1.27 5.10 -26.73 -0.14 -1.41 16 6 C -0.13 -1.89 5.33 -26.73 -0.14 -2.03 16 7 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 8 N -0.74 -18.78 5.60 -59.90 -0.34 -19.12 16 9 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 13 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 N -0.72 -5.24 4.33 -53.81 -0.23 -5.47 16 18 C 0.52 4.54 7.10 -10.98 -0.08 4.46 16 19 O -0.54 -7.01 15.41 5.56 0.09 -6.93 16 20 C -0.11 -0.61 2.05 -93.00 -0.19 -0.80 16 21 H 0.10 0.41 7.87 -51.93 -0.41 0.00 16 22 C -0.14 -0.49 4.94 -27.38 -0.14 -0.63 16 23 C 0.11 0.28 6.46 -3.70 -0.02 0.26 16 24 N -0.73 -3.87 5.27 -59.93 -0.32 -4.18 16 25 C 0.52 4.44 7.06 -11.25 -0.08 4.36 16 26 O -0.55 -7.33 17.92 5.56 0.10 -7.23 16 27 C -0.14 -0.88 5.58 -27.49 -0.15 -1.03 16 28 C -0.09 -0.67 4.31 -27.31 -0.12 -0.79 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.40 2.00 7.59 -40.82 -0.31 1.69 16 43 H 0.08 0.40 8.05 -51.93 -0.42 -0.01 16 44 H 0.08 0.18 6.96 -51.93 -0.36 -0.18 16 45 H 0.08 0.16 6.71 -51.93 -0.35 -0.19 16 46 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 47 H 0.40 1.86 8.91 -40.82 -0.36 1.50 16 48 H 0.09 0.38 6.77 -51.92 -0.35 0.02 16 49 H 0.10 0.68 8.13 -51.93 -0.42 0.25 16 50 H 0.09 0.72 7.75 -51.93 -0.40 0.32 16 51 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -36.66 404.26 -9.28 -45.94 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -9.10 Total: 4.34 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.28 Total: -3.21 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.16 Total: -56.37 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.19 Total: -14.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.66 -9.28 -45.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171922900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.465 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds